>UXUA_STRA1 (Q3K203) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)|
          Length = 348

 Score = 32.7 bits (73), Expect = 0.96
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +3

Query: 261 TMC--SIAKDPYPRIANIGRRALSLVGVEQVVMRNTRFGSGGAGETSAPSSNIG 416
           T+C  S A DP   +  I RRA  L  V  V  RN + G G + + SA  S  G
Sbjct: 234 TLCVGSYASDPQNDVLEISRRAFELERVNFVHARNIKLGDGKSFKESAHPSEYG 287

>UXUA_STRA5 (Q8E0M8) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)|
          Length = 348

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +3

Query: 261 TMC--SIAKDPYPRIANIGRRALSLVGVEQVVMRNTRFGSGGAGETSAPSSNIG 416
           T+C  S A DP   +  I RRA  L  V  V  RN + G G + + SA  S  G
Sbjct: 234 TLCVGSYASDPQNDVLEISRRAFELDRVNFVHARNIKLGDGKSFKESAHPSEYG 287

>UXUA_STRA3 (Q8E6A2) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)|
          Length = 348

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +3

Query: 261 TMC--SIAKDPYPRIANIGRRALSLVGVEQVVMRNTRFGSGGAGETSAPSSNIG 416
           T+C  S A DP   +  I RRA  L  V  V  RN + G G + + SA  S  G
Sbjct: 234 TLCVGSYASDPQNDVLEISRRAFELDRVNFVHARNIKLGDGKSFKESAHPSEYG 287

>CRF1_YARLI (P45815) Copper resistance protein CRF1|
          Length = 411

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
 Frame = +3

Query: 216 SRPIIDSGIYSLFISTMCSIAKDPYPRIANIGRRALSLVGVEQVVMRNTRFGS------- 374
           S P++DS ++S       + + + +  I   G RAL+   +      +T   S       
Sbjct: 278 SSPLLDSDVFSSLDMEPVAHSNNNHGGIPTGGSRALASTDINFDRFESTSPSSILSSWNL 337

Query: 375 -GGAGETSAPSSNIGMARSSSWFDMNSGISMAFRTPPVSPPQHDYLTGLRRVCSM 536
            GG G + AP  ++    S+S        + + +TPP S    +++ G ++ CS+
Sbjct: 338 WGGVGGSDAPEMSVAANPSAS------ASASSIQTPPSSNATPEWVQGQQQPCSV 386

>DDX39_RAT (Q5U216) ATP-dependent RNA helicase DDX39 (EC 3.6.1.-) (DEAD box|
           protein 39) (Nuclear RNA helicase, DECD variant of DEAD
           box family)
          Length = 427

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
 Frame = -3

Query: 439 NQEEERAIPMFDEGADVSPAPPLPNLV-FLMTTCSTPTRDSALRP--IFAILG*GSLAME 269
           +++EE  +P      + +PAPP  ++    ++  S+  RD  L+P  + AI+  G    E
Sbjct: 14  DEDEEPQVPQ-----ESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCG---FE 65

Query: 268 HIVEINRE*IPLSIIGLDLV 209
           H  E+  E IP +I+G+D++
Sbjct: 66  HPSEVQHECIPQAILGMDVL 85

>DDX39_MOUSE (Q8VDW0) ATP-dependent RNA helicase DDX39 (EC 3.6.1.-) (DEAD box|
           protein 39)
          Length = 427

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
 Frame = -3

Query: 445 MSNQEEERAIPMFDEGADV------SPAPPLPNLV-FLMTTCSTPTRDSALRP--IFAIL 293
           M+ Q+ E  +  +DE  +       +PAPP  ++    ++  S+  RD  L+P  + AI+
Sbjct: 1   MAEQDVENELLDYDEDEEPQAPQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIV 60

Query: 292 G*GSLAMEHIVEINRE*IPLSIIGLDLV 209
             G    EH  E+  E IP +I+G+D++
Sbjct: 61  DCG---FEHPSEVQHECIPQAILGMDVL 85

>DDX39_HUMAN (O00148) ATP-dependent RNA helicase DDX39 (EC 3.6.1.-) (DEAD box|
           protein 39) (Nuclear RNA helicase URH49)
          Length = 427

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
 Frame = -3

Query: 439 NQEEERAIPMFDEGADVSPAPPLPNLV-FLMTTCSTPTRDSALRP--IFAILG*GSLAME 269
           ++EEE   P      + +PAPP  ++    ++  S+  RD  L+P  + AI+  G    E
Sbjct: 14  DEEEEPQAPQ-----ESTPAPPKKDIKGSYVSIHSSGFRDFLLKPELLRAIVDCG---FE 65

Query: 268 HIVEINRE*IPLSIIGLDLV 209
           H  E+  E IP +I+G+D++
Sbjct: 66  HPSEVQHECIPQAILGMDVL 85


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,187,312
Number of Sequences: 219361
Number of extensions: 1955294
Number of successful extensions: 4468
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4466
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6143359464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)