ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2b21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY491431.1| Oryza sativa (japonica cultivar-group) transducin/WD-40 repeat protein mRNA, partial cds Length = 4484 Score = 440 bits (222), Expect = e-120 Identities = 545/651 (83%), Gaps = 15/651 (2%) Strand = Plus / Plus Query: 3 agcagtggcctttcttctcatattggtcctgtgttaagggttggtagtgataccagtgcc 62 |||||||||||| | || |||||||||||||| ||||||||||| ||||||| ||||||| Sbjct: 1978 agcagtggccttgcctcacatattggtcctgttttaagggttggcagtgataacagtgcc 2037 Query: 63 acaggacgagatggaagaatttctacgagcagcccgattgcgacaaatagcatcatgcat 122 || | || ||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 2038 actgctcgtgatggaagaatctctacgagcagcccgattgcaacaaatagcatcatgcat 2097 Query: 123 gggtctccccagtcagatgattcttctcagcactctgattcaggcatattgctgagagag 182 || ||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| Sbjct: 2098 ggttctccacagtcagatgattcttcccaacactctgattcaggcatattactgagagag 2157 Query: 183 aatgcaagtaatggtggtctcagctacaccaggtcaaggcctattattgacagtggaatt 242 |||||||||||||||||||||| |||| | || || ||||| |||||| | ||| || Sbjct: 2158 aatgcaagtaatggtggtctcaactactcaagatcgaggcc---tattgataatgggatc 2214 Query: 243 tattccctatttatttcgacgatgtgctccattgctaaagatccttaccctagaattgca 302 ||||||| |||||| | || |||||| ||||||||||||||||||| ||||||||| Sbjct: 2215 tattcccaatttatagcaactatgtgcaatgttgctaaagatccttacccaagaattgca 2274 Query: 303 aatattggccggagagcactgtcccttgtaggggtcgagcaagtggtcatgagaaatact 362 | |||||| || ||| ||||||| |||| || |||||||| ||||||||| | | Sbjct: 2275 agtattgggaaaagggcattgtccctcataggtgttgagcaagtaagcatgagaaacagt 2334 Query: 363 agatttggcagtgggggtg------caggagaaacatctg---ctccttcatcaaacata 413 ||| || ||| ||| |||| ||||||| ||||||| | |||||||||||| | Sbjct: 2335 agacttagcaatggaggtgcacacccaggagagacatctgtgcccccttcatcaaacttt 2394 Query: 414 ggaatggcacgttcttcttcctggttcgacatgaattctggaa---tctcaatggcattt 470 ||||||||||| || ||||||||||| || ||||| ||||||| |||| |||| ||| Sbjct: 2395 ggaatggcacgctcctcttcctggtttgatatgaactctggaaatttctcggtggccttt 2454 Query: 471 aggactcctcctgttagtccacctcagcatgattaccttacagggttgcgccgcgtgtgt 530 |||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 2455 aggactcctcctgttagtccccctcagcatgactacctcacaggattgcgccgagtgtgc 2514 Query: 531 tcgatggagttcagaccacatctcttgaattcacctgatggcttagctgatccactctta 590 ||||||||||||||||||||| | ||||| |||||||||||| |||||||||| || ||| Sbjct: 2515 tcgatggagttcagaccacatgttttgaactcacctgatggcctagctgatcctctttta 2574 Query: 591 agctctgctgctgcccccagtaccagtgagcttaatatacttccccaatca 641 ||||| ||| |||||||| | || | ||| ||||||||||||||||| Sbjct: 2575 agctccagtgcagcccccagcaacatggggctcgatatacttccccaatca 2625
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 297 bits (150), Expect = 2e-77 Identities = 384/461 (83%), Gaps = 12/461 (2%) Strand = Plus / Minus Query: 3 agcagtggcctttcttctcatattggtcctgtgttaagggttggtagtgataccagtgcc 62 |||||||||||| | || |||||||||||||| ||||||||||| ||||||| ||||||| Sbjct: 543619 agcagtggccttgcctcacatattggtcctgttttaagggttggcagtgataacagtgcc 543560 Query: 63 acaggacgagatggaagaatttctacgagcagcccgattgcgacaaatagcatcatgcat 122 || | || ||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 543559 actgctcgtgatggaagaatctctacgagcagcccgattgcaacaaatagcatcatgcat 543500 Query: 123 gggtctccccagtcagatgattcttctcagcactctgattcaggcatattgctgagagag 182 || ||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| Sbjct: 543499 ggttctccacagtcagatgattcttcccaacactctgattcaggcatattactgagagag 543440 Query: 183 aatgcaagtaatggtggtctcagctacaccaggtcaaggcctattattgacagtggaatt 242 |||||||||||||||||||||| |||| | || || ||||| |||||| | ||| || Sbjct: 543439 aatgcaagtaatggtggtctcaactactcaagatcgaggcc---tattgataatgggatc 543383 Query: 243 tattccctatttatttcgacgatgtgctccattgctaaagatccttaccctagaattgca 302 ||||||| |||||| | || |||||| ||||||||||||||||||| ||||||||| Sbjct: 543382 tattcccaatttatagcaactatgtgcaatgttgctaaagatccttacccaagaattgca 543323 Query: 303 aatattggccggagagcactgtcccttgtaggggtcgagcaagtggtcatgagaaatact 362 | |||||| || ||| ||||||| |||| || |||||||| ||||||||| | | Sbjct: 543322 agtattgggaaaagggcattgtccctcataggtgttgagcaagtaagcatgagaaacagt 543263 Query: 363 agatttggcagtgggggtg------caggagaaacatctg---ctccttcatcaaacata 413 ||| || ||| ||| |||| ||||||| ||||||| | |||||||||||| | Sbjct: 543262 agacttagcaatggaggtgcacacccaggagagacatctgtgcccccttcatcaaacttt 543203 Query: 414 ggaatggcacgttcttcttcctggttcgacatgaattctgg 454 ||||||||||| || ||||||||||| || ||||| ||||| Sbjct: 543202 ggaatggcacgctcctcttcctggtttgatatgaactctgg 543162 Score = 176 bits (89), Expect = 6e-41 Identities = 164/189 (86%) Strand = Plus / Minus Query: 463 tggcatttaggactcctcctgttagtccacctcagcatgattaccttacagggttgcgcc 522 |||| ||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||| Sbjct: 543031 tggcctttaggactcctcctgttagtccccctcagcatgactacctcacaggattgcgcc 542972 Query: 523 gcgtgtgttcgatggagttcagaccacatctcttgaattcacctgatggcttagctgatc 582 | ||||| ||||||||||||||||||||| | ||||| |||||||||||||||||||||| Sbjct: 542971 gagtgtgctcgatggagttcagaccacatgttttgaactcacctgatggcttagctgatc 542912 Query: 583 cactcttaagctctgctgctgcccccagtaccagtgagcttaatatacttccccaatcaa 642 | || |||||||| ||| |||||||| | || | ||| ||||||||||||||||| Sbjct: 542911 cgcttttaagctccagtgcagcccccagcaacatggggctctatatacttccccaatcat 542852 Query: 643 caatttaca 651 |||||||| Sbjct: 542851 taatttaca 542843
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 297 bits (150), Expect = 2e-77 Identities = 384/461 (83%), Gaps = 12/461 (2%) Strand = Plus / Minus Query: 3 agcagtggcctttcttctcatattggtcctgtgttaagggttggtagtgataccagtgcc 62 |||||||||||| | || |||||||||||||| ||||||||||| ||||||| ||||||| Sbjct: 543619 agcagtggccttgcctcacatattggtcctgttttaagggttggcagtgataacagtgcc 543560 Query: 63 acaggacgagatggaagaatttctacgagcagcccgattgcgacaaatagcatcatgcat 122 || | || ||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 543559 actgctcgtgatggaagaatctctacgagcagcccgattgcaacaaatagcatcatgcat 543500 Query: 123 gggtctccccagtcagatgattcttctcagcactctgattcaggcatattgctgagagag 182 || ||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| Sbjct: 543499 ggttctccacagtcagatgattcttcccaacactctgattcaggcatattactgagagag 543440 Query: 183 aatgcaagtaatggtggtctcagctacaccaggtcaaggcctattattgacagtggaatt 242 |||||||||||||||||||||| |||| | || || ||||| |||||| | ||| || Sbjct: 543439 aatgcaagtaatggtggtctcaactactcaagatcgaggcc---tattgataatgggatc 543383 Query: 243 tattccctatttatttcgacgatgtgctccattgctaaagatccttaccctagaattgca 302 ||||||| |||||| | || |||||| ||||||||||||||||||| ||||||||| Sbjct: 543382 tattcccaatttatagcaactatgtgcaatgttgctaaagatccttacccaagaattgca 543323 Query: 303 aatattggccggagagcactgtcccttgtaggggtcgagcaagtggtcatgagaaatact 362 | |||||| || ||| ||||||| |||| || |||||||| ||||||||| | | Sbjct: 543322 agtattgggaaaagggcattgtccctcataggtgttgagcaagtaagcatgagaaacagt 543263 Query: 363 agatttggcagtgggggtg------caggagaaacatctg---ctccttcatcaaacata 413 ||| || ||| ||| |||| ||||||| ||||||| | |||||||||||| | Sbjct: 543262 agacttagcaatggaggtgcacacccaggagagacatctgtgcccccttcatcaaacttt 543203 Query: 414 ggaatggcacgttcttcttcctggttcgacatgaattctgg 454 ||||||||||| || ||||||||||| || ||||| ||||| Sbjct: 543202 ggaatggcacgctcctcttcctggtttgatatgaactctgg 543162 Score = 176 bits (89), Expect = 6e-41 Identities = 164/189 (86%) Strand = Plus / Minus Query: 463 tggcatttaggactcctcctgttagtccacctcagcatgattaccttacagggttgcgcc 522 |||| ||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||| Sbjct: 543031 tggcctttaggactcctcctgttagtccccctcagcatgactacctcacaggattgcgcc 542972 Query: 523 gcgtgtgttcgatggagttcagaccacatctcttgaattcacctgatggcttagctgatc 582 | ||||| ||||||||||||||||||||| | ||||| |||||||||||||||||||||| Sbjct: 542971 gagtgtgctcgatggagttcagaccacatgttttgaactcacctgatggcttagctgatc 542912 Query: 583 cactcttaagctctgctgctgcccccagtaccagtgagcttaatatacttccccaatcaa 642 | || |||||||| ||| |||||||| | || | ||| ||||||||||||||||| Sbjct: 542911 cgcttttaagctccagtgcagcccccagcaacatggggctctatatacttccccaatcat 542852 Query: 643 caatttaca 651 |||||||| Sbjct: 542851 taatttaca 542843
>emb|BX000510.1|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769_D07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 115859 Score = 297 bits (150), Expect = 2e-77 Identities = 384/461 (83%), Gaps = 12/461 (2%) Strand = Plus / Plus Query: 3 agcagtggcctttcttctcatattggtcctgtgttaagggttggtagtgataccagtgcc 62 |||||||||||| | || |||||||||||||| ||||||||||| ||||||| ||||||| Sbjct: 105224 agcagtggccttgcctcacatattggtcctgttttaagggttggcagtgataacagtgcc 105283 Query: 63 acaggacgagatggaagaatttctacgagcagcccgattgcgacaaatagcatcatgcat 122 || | || ||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 105284 actgctcgtgatggaagaatctctacgagcagcccgattgcaacaaatagcatcatgcat 105343 Query: 123 gggtctccccagtcagatgattcttctcagcactctgattcaggcatattgctgagagag 182 || ||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| Sbjct: 105344 ggttctccacagtcagatgattcttcccaacactctgattcaggcatattactgagagag 105403 Query: 183 aatgcaagtaatggtggtctcagctacaccaggtcaaggcctattattgacagtggaatt 242 |||||||||||||||||||||| |||| | || || ||||| |||||| | ||| || Sbjct: 105404 aatgcaagtaatggtggtctcaactactcaagatcgaggcc---tattgataatgggatc 105460 Query: 243 tattccctatttatttcgacgatgtgctccattgctaaagatccttaccctagaattgca 302 ||||||| |||||| | || |||||| ||||||||||||||||||| ||||||||| Sbjct: 105461 tattcccaatttatagcaactatgtgcaatgttgctaaagatccttacccaagaattgca 105520 Query: 303 aatattggccggagagcactgtcccttgtaggggtcgagcaagtggtcatgagaaatact 362 | |||||| || ||| ||||||| |||| || |||||||| ||||||||| | | Sbjct: 105521 agtattgggaaaagggcattgtccctcataggtgttgagcaagtaagcatgagaaacagt 105580 Query: 363 agatttggcagtgggggtg------caggagaaacatctg---ctccttcatcaaacata 413 ||| || ||| ||| |||| ||||||| ||||||| | |||||||||||| | Sbjct: 105581 agacttagcaatggaggtgcacacccaggagagacatctgtgcccccttcatcaaacttt 105640 Query: 414 ggaatggcacgttcttcttcctggttcgacatgaattctgg 454 ||||||||||| || ||||||||||| || ||||| ||||| Sbjct: 105641 ggaatggcacgctcctcttcctggtttgatatgaactctgg 105681 Score = 176 bits (89), Expect = 6e-41 Identities = 164/189 (86%) Strand = Plus / Plus Query: 463 tggcatttaggactcctcctgttagtccacctcagcatgattaccttacagggttgcgcc 522 |||| ||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||| Sbjct: 105812 tggcctttaggactcctcctgttagtccccctcagcatgactacctcacaggattgcgcc 105871 Query: 523 gcgtgtgttcgatggagttcagaccacatctcttgaattcacctgatggcttagctgatc 582 | ||||| ||||||||||||||||||||| | ||||| |||||||||||||||||||||| Sbjct: 105872 gagtgtgctcgatggagttcagaccacatgttttgaactcacctgatggcttagctgatc 105931 Query: 583 cactcttaagctctgctgctgcccccagtaccagtgagcttaatatacttccccaatcaa 642 | || |||||||| ||| |||||||| | || | ||| ||||||||||||||||| Sbjct: 105932 cgcttttaagctccagtgcagcccccagcaacatggggctctatatacttccccaatcat 105991 Query: 643 caatttaca 651 |||||||| Sbjct: 105992 taatttaca 106000
>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141089 Score = 297 bits (150), Expect = 2e-77 Identities = 384/461 (83%), Gaps = 12/461 (2%) Strand = Plus / Plus Query: 3 agcagtggcctttcttctcatattggtcctgtgttaagggttggtagtgataccagtgcc 62 |||||||||||| | || |||||||||||||| ||||||||||| ||||||| ||||||| Sbjct: 3153 agcagtggccttgcctcacatattggtcctgttttaagggttggcagtgataacagtgcc 3212 Query: 63 acaggacgagatggaagaatttctacgagcagcccgattgcgacaaatagcatcatgcat 122 || | || ||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 3213 actgctcgtgatggaagaatctctacgagcagcccgattgcaacaaatagcatcatgcat 3272 Query: 123 gggtctccccagtcagatgattcttctcagcactctgattcaggcatattgctgagagag 182 || ||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| Sbjct: 3273 ggttctccacagtcagatgattcttcccaacactctgattcaggcatattactgagagag 3332 Query: 183 aatgcaagtaatggtggtctcagctacaccaggtcaaggcctattattgacagtggaatt 242 |||||||||||||||||||||| |||| | || || ||||| |||||| | ||| || Sbjct: 3333 aatgcaagtaatggtggtctcaactactcaagatcgaggcc---tattgataatgggatc 3389 Query: 243 tattccctatttatttcgacgatgtgctccattgctaaagatccttaccctagaattgca 302 ||||||| |||||| | || |||||| ||||||||||||||||||| ||||||||| Sbjct: 3390 tattcccaatttatagcaactatgtgcaatgttgctaaagatccttacccaagaattgca 3449 Query: 303 aatattggccggagagcactgtcccttgtaggggtcgagcaagtggtcatgagaaatact 362 | |||||| || ||| ||||||| |||| || |||||||| ||||||||| | | Sbjct: 3450 agtattgggaaaagggcattgtccctcataggtgttgagcaagtaagcatgagaaacagt 3509 Query: 363 agatttggcagtgggggtg------caggagaaacatctg---ctccttcatcaaacata 413 ||| || ||| ||| |||| ||||||| ||||||| | |||||||||||| | Sbjct: 3510 agacttagcaatggaggtgcacacccaggagagacatctgtgcccccttcatcaaacttt 3569 Query: 414 ggaatggcacgttcttcttcctggttcgacatgaattctgg 454 ||||||||||| || ||||||||||| || ||||| ||||| Sbjct: 3570 ggaatggcacgctcctcttcctggtttgatatgaactctgg 3610 Score = 176 bits (89), Expect = 6e-41 Identities = 164/189 (86%) Strand = Plus / Plus Query: 463 tggcatttaggactcctcctgttagtccacctcagcatgattaccttacagggttgcgcc 522 |||| ||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||| Sbjct: 3741 tggcctttaggactcctcctgttagtccccctcagcatgactacctcacaggattgcgcc 3800 Query: 523 gcgtgtgttcgatggagttcagaccacatctcttgaattcacctgatggcttagctgatc 582 | ||||| ||||||||||||||||||||| | ||||| |||||||||||||||||||||| Sbjct: 3801 gagtgtgctcgatggagttcagaccacatgttttgaactcacctgatggcttagctgatc 3860 Query: 583 cactcttaagctctgctgctgcccccagtaccagtgagcttaatatacttccccaatcaa 642 | || |||||||| ||| |||||||| | || | ||| ||||||||||||||||| Sbjct: 3861 cgcttttaagctccagtgcagcccccagcaacatggggctctatatacttccccaatcat 3920 Query: 643 caatttaca 651 |||||||| Sbjct: 3921 taatttaca 3929
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 289 bits (146), Expect = 6e-75 Identities = 383/461 (83%), Gaps = 12/461 (2%) Strand = Plus / Minus Query: 3 agcagtggcctttcttctcatattggtcctgtgttaagggttggtagtgataccagtgcc 62 |||||||||||| | || ||||||||||| || ||||||||||| ||||||| ||||||| Sbjct: 465234 agcagtggccttgcctcacatattggtcccgttttaagggttggcagtgataacagtgcc 465175 Query: 63 acaggacgagatggaagaatttctacgagcagcccgattgcgacaaatagcatcatgcat 122 || | || ||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 465174 actgctcgtgatggaagaatctctacgagcagcccgattgcaacaaatagcatcatgcat 465115 Query: 123 gggtctccccagtcagatgattcttctcagcactctgattcaggcatattgctgagagag 182 || ||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| Sbjct: 465114 ggttctccacagtcagatgattcttcccaacactctgattcaggcatattactgagagag 465055 Query: 183 aatgcaagtaatggtggtctcagctacaccaggtcaaggcctattattgacagtggaatt 242 |||||||||||||||||||||| |||| | || || ||||| |||||| | ||| || Sbjct: 465054 aatgcaagtaatggtggtctcaactactcaagatcgaggcc---tattgataatgggatc 464998 Query: 243 tattccctatttatttcgacgatgtgctccattgctaaagatccttaccctagaattgca 302 ||||||| |||||| | || |||||| ||||||||||||||||||| ||||||||| Sbjct: 464997 tattcccaatttatagcaactatgtgcaatgttgctaaagatccttacccaagaattgca 464938 Query: 303 aatattggccggagagcactgtcccttgtaggggtcgagcaagtggtcatgagaaatact 362 | |||||| || ||| ||||||| |||| || |||||||| ||||||||| | | Sbjct: 464937 agtattgggaaaagggcattgtccctcataggtgttgagcaagtaagcatgagaaacagt 464878 Query: 363 agatttggcagtgggggtg------caggagaaacatctg---ctccttcatcaaacata 413 ||| || ||| ||| |||| ||||||| ||||||| | |||||||||||| | Sbjct: 464877 agacttagcaatggaggtgcacacccaggagagacatctgtgcccccttcatcaaacttt 464818 Query: 414 ggaatggcacgttcttcttcctggttcgacatgaattctgg 454 ||||||||||| || ||||||||||| || ||||| ||||| Sbjct: 464817 ggaatggcacgctcctcttcctggtttgatatgaactctgg 464777 Score = 180 bits (91), Expect = 4e-42 Identities = 169/195 (86%) Strand = Plus / Minus Query: 457 tctcaatggcatttaggactcctcctgttagtccacctcagcatgattaccttacagggt 516 |||| ||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||| | Sbjct: 464652 tctcgatggcctttaggactcctcctgttagtccccctcagcatgactacctcacaggat 464593 Query: 517 tgcgccgcgtgtgttcgatggagttcagaccacatctcttgaattcacctgatggcttag 576 ||||||| ||||| ||||||||||||||||||||| | ||||| |||||||||||||||| Sbjct: 464592 tgcgccgagtgtgctcgatggagttcagaccacatgttttgaactcacctgatggcttag 464533 Query: 577 ctgatccactcttaagctctgctgctgcccccagtaccagtgagcttaatatacttcccc 636 ||||||| || |||||||| ||| |||||||| | || | ||| |||||||||||| Sbjct: 464532 ctgatcctcttttaagctccagtgcagcccccagcaacatggggctcgatatacttcccc 464473 Query: 637 aatcaacaatttaca 651 ||||| |||||||| Sbjct: 464472 aatcattaatttaca 464458
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 289 bits (146), Expect = 6e-75 Identities = 383/461 (83%), Gaps = 12/461 (2%) Strand = Plus / Minus Query: 3 agcagtggcctttcttctcatattggtcctgtgttaagggttggtagtgataccagtgcc 62 |||||||||||| | || ||||||||||| || ||||||||||| ||||||| ||||||| Sbjct: 465234 agcagtggccttgcctcacatattggtcccgttttaagggttggcagtgataacagtgcc 465175 Query: 63 acaggacgagatggaagaatttctacgagcagcccgattgcgacaaatagcatcatgcat 122 || | || ||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 465174 actgctcgtgatggaagaatctctacgagcagcccgattgcaacaaatagcatcatgcat 465115 Query: 123 gggtctccccagtcagatgattcttctcagcactctgattcaggcatattgctgagagag 182 || ||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| Sbjct: 465114 ggttctccacagtcagatgattcttcccaacactctgattcaggcatattactgagagag 465055 Query: 183 aatgcaagtaatggtggtctcagctacaccaggtcaaggcctattattgacagtggaatt 242 |||||||||||||||||||||| |||| | || || ||||| |||||| | ||| || Sbjct: 465054 aatgcaagtaatggtggtctcaactactcaagatcgaggcc---tattgataatgggatc 464998 Query: 243 tattccctatttatttcgacgatgtgctccattgctaaagatccttaccctagaattgca 302 ||||||| |||||| | || |||||| ||||||||||||||||||| ||||||||| Sbjct: 464997 tattcccaatttatagcaactatgtgcaatgttgctaaagatccttacccaagaattgca 464938 Query: 303 aatattggccggagagcactgtcccttgtaggggtcgagcaagtggtcatgagaaatact 362 | |||||| || ||| ||||||| |||| || |||||||| ||||||||| | | Sbjct: 464937 agtattgggaaaagggcattgtccctcataggtgttgagcaagtaagcatgagaaacagt 464878 Query: 363 agatttggcagtgggggtg------caggagaaacatctg---ctccttcatcaaacata 413 ||| || ||| ||| |||| ||||||| ||||||| | |||||||||||| | Sbjct: 464877 agacttagcaatggaggtgcacacccaggagagacatctgtgcccccttcatcaaacttt 464818 Query: 414 ggaatggcacgttcttcttcctggttcgacatgaattctgg 454 ||||||||||| || ||||||||||| || ||||| ||||| Sbjct: 464817 ggaatggcacgctcctcttcctggtttgatatgaactctgg 464777 Score = 180 bits (91), Expect = 4e-42 Identities = 169/195 (86%) Strand = Plus / Minus Query: 457 tctcaatggcatttaggactcctcctgttagtccacctcagcatgattaccttacagggt 516 |||| ||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||| | Sbjct: 464652 tctcgatggcctttaggactcctcctgttagtccccctcagcatgactacctcacaggat 464593 Query: 517 tgcgccgcgtgtgttcgatggagttcagaccacatctcttgaattcacctgatggcttag 576 ||||||| ||||| ||||||||||||||||||||| | ||||| |||||||||||||||| Sbjct: 464592 tgcgccgagtgtgctcgatggagttcagaccacatgttttgaactcacctgatggcttag 464533 Query: 577 ctgatccactcttaagctctgctgctgcccccagtaccagtgagcttaatatacttcccc 636 ||||||| || |||||||| ||| |||||||| | || | ||| |||||||||||| Sbjct: 464532 ctgatcctcttttaagctccagtgcagcccccagcaacatggggctcgatatacttcccc 464473 Query: 637 aatcaacaatttaca 651 ||||| |||||||| Sbjct: 464472 aatcattaatttaca 464458
>emb|BX000493.1|CNS08CDJ Oryza sativa chromosome 11, . BAC OSJNBb0037D03 of library OSJNBb from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 130544 Score = 289 bits (146), Expect = 6e-75 Identities = 383/461 (83%), Gaps = 12/461 (2%) Strand = Plus / Plus Query: 3 agcagtggcctttcttctcatattggtcctgtgttaagggttggtagtgataccagtgcc 62 |||||||||||| | || ||||||||||| || ||||||||||| ||||||| ||||||| Sbjct: 105078 agcagtggccttgcctcacatattggtcccgttttaagggttggcagtgataacagtgcc 105137 Query: 63 acaggacgagatggaagaatttctacgagcagcccgattgcgacaaatagcatcatgcat 122 || | || ||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 105138 actgctcgtgatggaagaatctctacgagcagcccgattgcaacaaatagcatcatgcat 105197 Query: 123 gggtctccccagtcagatgattcttctcagcactctgattcaggcatattgctgagagag 182 || ||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||| Sbjct: 105198 ggttctccacagtcagatgattcttcccaacactctgattcaggcatattactgagagag 105257 Query: 183 aatgcaagtaatggtggtctcagctacaccaggtcaaggcctattattgacagtggaatt 242 |||||||||||||||||||||| |||| | || || ||||| |||||| | ||| || Sbjct: 105258 aatgcaagtaatggtggtctcaactactcaagatcgaggcc---tattgataatgggatc 105314 Query: 243 tattccctatttatttcgacgatgtgctccattgctaaagatccttaccctagaattgca 302 ||||||| |||||| | || |||||| ||||||||||||||||||| ||||||||| Sbjct: 105315 tattcccaatttatagcaactatgtgcaatgttgctaaagatccttacccaagaattgca 105374 Query: 303 aatattggccggagagcactgtcccttgtaggggtcgagcaagtggtcatgagaaatact 362 | |||||| || ||| ||||||| |||| || |||||||| ||||||||| | | Sbjct: 105375 agtattgggaaaagggcattgtccctcataggtgttgagcaagtaagcatgagaaacagt 105434 Query: 363 agatttggcagtgggggtg------caggagaaacatctg---ctccttcatcaaacata 413 ||| || ||| ||| |||| ||||||| ||||||| | |||||||||||| | Sbjct: 105435 agacttagcaatggaggtgcacacccaggagagacatctgtgcccccttcatcaaacttt 105494 Query: 414 ggaatggcacgttcttcttcctggttcgacatgaattctgg 454 ||||||||||| || ||||||||||| || ||||| ||||| Sbjct: 105495 ggaatggcacgctcctcttcctggtttgatatgaactctgg 105535 Score = 180 bits (91), Expect = 4e-42 Identities = 169/195 (86%) Strand = Plus / Plus Query: 457 tctcaatggcatttaggactcctcctgttagtccacctcagcatgattaccttacagggt 516 |||| ||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||| | Sbjct: 105660 tctcgatggcctttaggactcctcctgttagtccccctcagcatgactacctcacaggat 105719 Query: 517 tgcgccgcgtgtgttcgatggagttcagaccacatctcttgaattcacctgatggcttag 576 ||||||| ||||| ||||||||||||||||||||| | ||||| |||||||||||||||| Sbjct: 105720 tgcgccgagtgtgctcgatggagttcagaccacatgttttgaactcacctgatggcttag 105779 Query: 577 ctgatccactcttaagctctgctgctgcccccagtaccagtgagcttaatatacttcccc 636 ||||||| || |||||||| ||| |||||||| | || | ||| |||||||||||| Sbjct: 105780 ctgatcctcttttaagctccagtgcagcccccagcaacatggggctcgatatacttcccc 105839 Query: 637 aatcaacaatttaca 651 ||||| |||||||| Sbjct: 105840 aatcattaatttaca 105854
>emb|AL033525.10|HS1108H3 Human DNA sequence from clone RP5-1108H3 on chromosome 1p35.1-36.31 Contains ESTs, STSs, GSSs and an ata repeat polymorphism, complete sequence Length = 164901 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 168 atattgctgagagagaatgcaa 189 |||||||||||||||||||||| Sbjct: 6089 atattgctgagagagaatgcaa 6110
>emb|AL138893.5| Human DNA sequence from clone RP11-159L16 on chromosome 9p21.1-21.3, complete sequence Length = 157039 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 174 ctgagagagaatgcaagtaat 194 ||||||||||||||||||||| Sbjct: 26984 ctgagagagaatgcaagtaat 27004
>gb|AC107976.4| Homo sapiens chromosome 15, clone CTD-2576F9, complete sequence Length = 131548 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 533 gatggagttcagaccacatct 553 ||||||||||||||||||||| Sbjct: 108311 gatggagttcagaccacatct 108331
>gb|AC092651.3| Homo sapiens BAC clone RP11-431O23 from 2, complete sequence Length = 96153 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 gcagtgggggtgcaggagaaa 390 ||||||||||||||||||||| Sbjct: 33397 gcagtgggggtgcaggagaaa 33377
>gb|AC008278.3|AC008278 Homo sapiens BAC clone RP11-422A6 from 2, complete sequence Length = 136868 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 540 ttcagaccacatctcttgaat 560 ||||||||||||||||||||| Sbjct: 82234 ttcagaccacatctcttgaat 82214
>gb|AC132220.10| Homo sapiens chromosome 15, clone RP11-1142D4, complete sequence Length = 162101 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 533 gatggagttcagaccacatct 553 ||||||||||||||||||||| Sbjct: 23243 gatggagttcagaccacatct 23223
>gb|AC010913.9| Homo sapiens BAC clone RP11-44N22 from 2, complete sequence Length = 209161 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 370 gcagtgggggtgcaggagaaa 390 ||||||||||||||||||||| Sbjct: 79435 gcagtgggggtgcaggagaaa 79455
>gb|AC157663.2| Gallus gallus BAC clone CH261-38B6 from chromosome unknown, complete sequence Length = 176280 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 227 tattgacagtggaatttattc 247 ||||||||||||||||||||| Sbjct: 58241 tattgacagtggaatttattc 58261
>gb|AY570791.1| Mesocricetus auratus connexin46 (Cx46) mRNA, partial cds Length = 1216 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 593 ctctgctgctgcccccagtaccag 616 |||||||||||||||||| ||||| Sbjct: 24 ctctgctgctgcccccagcaccag 1
>ref|XM_382350.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02174.1) partial mRNA Length = 3456 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 gattcaggcatattgctgag 178 |||||||||||||||||||| Sbjct: 1859 gattcaggcatattgctgag 1840
>gb|AC108710.3| Homo sapiens 3p BAC RP11-88I7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186799 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 atgagaaatactagatttgg 370 |||||||||||||||||||| Sbjct: 21400 atgagaaatactagatttgg 21381
>emb|AL031843.2|HS246D7 Human DNA sequence from clone RP1-246D7 on chromosome 22q13.1-13.33, complete sequence Length = 28011 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 455 aatctcaatggcatttagga 474 |||||||||||||||||||| Sbjct: 12872 aatctcaatggcatttagga 12891
>emb|BX571704.13| Zebrafish DNA sequence from clone DKEY-33M14 in linkage group 9, complete sequence Length = 219065 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 gatgattcttctcagcactc 157 |||||||||||||||||||| Sbjct: 153026 gatgattcttctcagcactc 153007
>emb|BX510923.8| Zebrafish DNA sequence from clone CH211-214J8 in linkage group 5, complete sequence Length = 165838 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 337 tcgagcaagtggtcatgagaaata 360 ||||||| |||||||||||||||| Sbjct: 95224 tcgagcatgtggtcatgagaaata 95201
>gb|AC024890.20| Homo sapiens 3 BAC RP11-389A20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172117 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 atgagaaatactagatttgg 370 |||||||||||||||||||| Sbjct: 18947 atgagaaatactagatttgg 18928
>gb|AC092671.2| Homo sapiens BAC clone RP11-598I5 from 4, complete sequence Length = 164229 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 ggccggagagcactgtccct 328 |||||||||||||||||||| Sbjct: 128873 ggccggagagcactgtccct 128854
>tpg|BK005193.1| TPA: TPA_inf: Danio rerio alsin (als2) mRNA, partial cds Length = 4770 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gatgattcttctcagcactc 157 |||||||||||||||||||| Sbjct: 1261 gatgattcttctcagcactc 1280
>gb|AC024288.9| Homo sapiens, clone RP11-23B5, complete sequence Length = 169540 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 atttattccctatttatttc 259 |||||||||||||||||||| Sbjct: 39585 atttattccctatttatttc 39566
>gb|AC019233.7|AC019233 Homo sapiens clone RP11-631O4, complete sequence Length = 263876 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 atgagaaatactagatttgg 370 |||||||||||||||||||| Sbjct: 235279 atgagaaatactagatttgg 235260
>gb|AC048380.12| Homo sapiens chromosome 18, clone RP11-426J5, complete sequence Length = 224670 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 atttattccctatttatttc 259 |||||||||||||||||||| Sbjct: 209313 atttattccctatttatttc 209294
>emb|BX842610.3| Mouse DNA sequence from clone RP24-16C11 on chromosome 4, complete sequence Length = 51549 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 362 tagatttggcagtgggggtgcaggagaa 389 |||| ||||||||||| ||||||||||| Sbjct: 29736 tagagttggcagtgggcgtgcaggagaa 29763 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 362 tagatttggcagtgggggtgcaggagaa 389 |||| ||||||||||| ||||||||||| Sbjct: 29471 tagagttggcagtgggcgtgcaggagaa 29498
>gb|AC127691.4| Mus musculus BAC clone RP24-216M10 from 9, complete sequence Length = 153242 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 583 cactcttaagctctgctgctgccc 606 ||||||||||||||| |||||||| Sbjct: 63925 cactcttaagctctgatgctgccc 63902
>emb|AL672297.7| Mouse DNA sequence from clone RP23-137E3 on chromosome X, complete sequence Length = 195519 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 gggtgcaggagaaacatctg 396 |||||||||||||||||||| Sbjct: 28843 gggtgcaggagaaacatctg 28862
>dbj|D12920.2|WHTHBP1AC Triticum aestivum mRNA for transcription factor HBP-1a(c14), complete cds Length = 1734 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 acatctgctccttcatcaaa 409 |||||||||||||||||||| Sbjct: 1065 acatctgctccttcatcaaa 1084 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,931,865 Number of Sequences: 3902068 Number of extensions: 5931865 Number of successful extensions: 108678 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108421 Number of HSP's gapped (non-prelim): 248 length of query: 651 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 628 effective length of database: 17,143,297,704 effective search space: 10765990958112 effective search space used: 10765990958112 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
