No.
Definition
Score (bits)
E Value
1 GSTX6_SOYBN (P32110) Probable glutathione S-transferase (EC 2.5....
173
3e-43
2 GSTX1_TOBAC (Q03662) Probable glutathione S-transferase (EC 2.5....
167
2e-41
3 GSTX3_TOBAC (Q03664) Probable glutathione S-transferase (EC 2.5....
167
3e-41
4 GSTX2_TOBAC (Q03663) Probable glutathione S-transferase (EC 2.5....
163
5e-40
5 GSTX1_SOLTU (P32111) Probable glutathione S-transferase (EC 2.5....
157
3e-38
6 GSTU6_ORYSA (Q06398) Probable glutathione S-transferase GSTU6 (E...
152
1e-36
7 GSTX4_TOBAC (Q03666) Probable glutathione S-transferase (EC 2.5....
140
3e-33
8 GSTXC_TOBAC (P49332) Probable glutathione S-transferase parC (EC...
134
2e-31
9 GSTXA_ARATH (P46421) Glutathione S-transferase 103-1A (EC 2.5.1.18)
131
2e-30
10 LGUL_SOYBN (P46417) Lactoylglutathione lyase (EC 4.4.1.5) (Methy...
128
2e-29
11 GSTX1_NICPL (P50471) Probable glutathione S-transferase MSR-1 (E...
119
8e-27
12 GSTXA_TOBAC (P25317) Probable glutathione S-transferase parA (EC...
114
2e-25
13 GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC ...
114
3e-25
14 GSTU1_ORYSA (O65032) Probable glutathione S-transferase GSTU1 (E...
105
2e-22
15 GSTO1_HUMAN (P78417) Glutathione transferase omega-1 (EC 2.5.1.1...
59
2e-08
16 GSTO1_RAT (Q9Z339) Glutathione transferase omega-1 (EC 2.5.1.18)...
56
8e-08
17 GSTO1_PIG (Q9N1F5) Glutathione transferase omega-1 (EC 2.5.1.18)...
55
1e-07
18 LIGF_PSEPA (P30347) Protein ligF
54
5e-07
19 GSTO1_MOUSE (O09131) Glutathione transferase omega-1 (EC 2.5.1.1...
53
9e-07
20 MAAI_CAEEL (Q18938) Probable maleylacetoacetate isomerase (EC 5....
51
3e-06
21 AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor
49
2e-05
22 SSPA_SHIFL (P0ACA6) Stringent starvation protein A
47
4e-05
23 SSPA_ECOLI (P0ACA3) Stringent starvation protein A
47
4e-05
24 SSPA_ECOL6 (P0ACA4) Stringent starvation protein A
47
4e-05
25 SSPA_ECO57 (P0ACA5) Stringent starvation protein A
47
4e-05
26 SSPA_HAEIN (P45207) Stringent starvation protein A homolog
47
5e-05
27 MAAI_MOUSE (Q9WVL0) Maleylacetoacetate isomerase (EC 5.2.1.2) (M...
42
0.001
28 SSPA_PASMU (Q9CNB0) Stringent starvation protein A homolog
42
0.001
29 MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, trac...
42
0.002
30 SSPA_HAESO (P31784) Stringent starvation protein A homolog
41
0.003
31 MAAI_HUMAN (O43708) Maleylacetoacetate isomerase (EC 5.2.1.2) (M...
41
0.003
32 YK67_CAEEL (P34345) Hypothetical protein C29E4.7 in chromosome III
41
0.003
33 SSPA_HAEDU (Q7VLK4) Stringent starvation protein A homolog
40
0.005
34 YKJ3_CAEEL (P34277) Hypothetical protein C02D5.3 in chromosome III
40
0.005
35 GSTF_HYOMU (P46423) Glutathione S-transferase (EC 2.5.1.18) (GST...
40
0.006
36 GSTO2_HUMAN (Q9H4Y5) Glutathione transferase omega-2 (EC 2.5.1.18)
40
0.006
37 YFGG_SCHPO (O13854) Hypothetical serine/threonine-rich protein C...
40
0.006
38 GSTZ1_DIACA (P28342) Glutathione S-transferase 1 (EC 2.5.1.18) (...
40
0.006
39 GSTT7_DROME (Q9VG93) Glutathione S-transferase D7 (EC 2.5.1.18) ...
39
0.013
40 YB1E_SCHPO (P87179) Serine-rich protein C30B4.01c precursor
39
0.017
41 GSTA_PLEPL (P30568) Glutathione S-transferase A (EC 2.5.1.18) (G...
38
0.023
42 MAAI1_DROME (Q9VHD3) Probable maleylacetoacetate isomerase 1 (EC...
38
0.023
43 UC11_MAIZE (P80617) Unknown protein from 2D-PAGE of etiolated co...
38
0.030
44 YIBF_ECOLI (P0ACA1) Hypothetical GST-like protein yibF
37
0.039
45 YIBF_ECOL6 (P0ACA2) Hypothetical GST-like protein yibF
37
0.039
46 MUC5A_HUMAN (P98088) Mucin-5AC (Mucin 5 subtype AC, tracheobronc...
37
0.066
47 YB95_SCHPO (O42970) Hypothetical serine-rich protein C1E8.05 pre...
36
0.086
48 GSTA1_ANTST (P80894) Glutathione S-transferase (EC 2.5.1.18) (GS...
36
0.086
49 GSTT6_ANOGA (Q93113) Glutathione S-transferase 1-6 (EC 2.5.1.18)...
36
0.11
50 GSTZ_EUPES (P57108) Glutathione S-transferase zeta class (EC 2.5...
36
0.11
51 HMEN_DROVI (P09145) Segmentation polarity homeobox protein engra...
35
0.15
52 GSTZ2_DIACA (Q03425) Glutathione S-transferase 2 (EC 2.5.1.18) (...
35
0.15
53 RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subun...
35
0.19
54 RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subun...
35
0.19
55 VGP3_EBV (P03200) Envelope glycoprotein GP340/GP220 (Membrane an...
35
0.19
56 RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subun...
35
0.19
57 RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subun...
35
0.19
58 YS89_CAEEL (Q09624) Hypothetical protein ZK945.9
35
0.25
59 RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subun...
35
0.25
60 GSTA1_MOUSE (P13745) Glutathione S-transferase Ya chain (EC 2.5....
35
0.25
61 GSTZ2_ARATH (Q9ZVQ4) Probable glutathione S-transferase zeta-cla...
35
0.25
62 PO2F1_PIG (Q29076) POU domain, class 2, transcription factor 1 (...
35
0.25
63 RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subun...
35
0.25
64 GSTF1_TOBAC (P30109) Glutathione S-transferase PARB (EC 2.5.1.18...
34
0.33
65 GSTA2_RAT (P04903) Glutathione S-transferase alpha-2 (EC 2.5.1.1...
34
0.33
66 RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subun...
34
0.43
67 BSN_MOUSE (O88737) Bassoon protein
34
0.43
68 BSN_RAT (O88778) Bassoon protein
34
0.43
69 GSTZ1_ARATH (Q9ZVQ3) Glutathione S-transferase zeta-class 1 (EC ...
34
0.43
70 GSTA1_CAVPO (P81706) Glutathione S-transferase A (EC 2.5.1.18) (...
33
0.56
71 GSTA2_MOUSE (P10648) Glutathione S-transferase GT41A (EC 2.5.1.1...
33
0.56
72 RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subun...
33
0.73
73 YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein P...
33
0.73
74 RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subun...
33
0.73
75 PO2F1_CHICK (P15143) POU domain, class 2, transcription factor 1...
33
0.73
76 RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subun...
33
0.73
77 LIGE_PSEPA (P27457) Beta-etherase (Beta-aryl ether cleaving enzyme)
33
0.73
78 RAD32_SCHPO (Q09683) DNA repair protein rad32
33
0.95
79 MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment)
33
0.95
80 GSTA3_CHICK (P26697) Glutathione S-transferase 3 (EC 2.5.1.18) (...
33
0.95
81 GSTA2_CHICK (Q08393) Glutathione S-transferase (EC 2.5.1.18) (Cl...
33
0.95
82 YHU3_YEAST (P38844) Protein YHR143W precursor
33
0.95
83 PO2F1_HUMAN (P14859) POU domain, class 2, transcription factor 1...
33
0.95
84 SYL_RHOPA (Q6ND22) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-...
33
0.95
85 RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subun...
33
0.95
86 GSTA5_RAT (P46418) Glutathione S-transferase alpha-5 (EC 2.5.1.1...
32
1.2
87 GSTA3_MOUSE (P30115) Glutathione S-transferase Yc (EC 2.5.1.18) ...
32
1.2
88 DAN4_YEAST (P47179) Cell wall protein DAN4 precursor
32
1.2
89 GSTT5_ANOGA (Q93112) Glutathione S-transferase 1-5 (EC 2.5.1.18)...
32
1.2
90 WSC4_YEAST (P38739) Cell wall integrity and stress response comp...
32
1.2
91 ADRM1_MOUSE (Q9JKV1) Adhesion-regulating molecule 1 precursor (1...
32
1.2
92 FLO5_YEAST (P38894) Flocculation protein FLO5 precursor (Floccul...
32
1.2
93 HAL4_SCHPO (O14019) Serine/threonine-protein kinase hal4 (EC 2.7...
32
1.6
94 MUC13_RAT (P97881) Mucin-13 precursor
32
1.6
95 GSTA2_HUMAN (P09210) Glutathione S-transferase A2 (EC 2.5.1.18) ...
32
1.6
96 CAAL2_STRAW (Q82PC4) Carboxylate-amine ligase SAV999 (EC 6.3.-.-)
32
2.1
97 PO2F1_RAT (P31503) POU domain, class 2, transcription factor 1 (...
32
2.1
98 GSTA1_CHICK (Q08392) Glutathione S-transferase (EC 2.5.1.18) (GS...
32
2.1
99 GSTA1_BOVIN (Q28035) Glutathione S-transferase alpha-1 (EC 2.5.1...
32
2.1
100 VGP3_EBVP3 (P68344) Envelope glycoprotein GP340 (Membrane antige...
31
2.8
101 VGP3_EBVA8 (P68343) Envelope glycoprotein GP340 (Membrane antige...
31
2.8
102 FLO9_YEAST (P39712) Flocculation protein FLO9 precursor
31
2.8
103 ADRM1_RAT (Q9JMB5) Adhesion-regulating molecule 1 precursor (110...
31
2.8
104 TIR3_YEAST (P40552) Cell wall protein TIR3 precursor
31
2.8
105 KCNH3_RAT (O89047) Potassium voltage-gated channel subfamily H m...
27
3.5
106 KCNH3_MOUSE (Q9WVJ0) Potassium voltage-gated channel subfamily H...
27
3.5
107 SCW11_YEAST (P53189) Probable family 17 glucosidase SCW11 precur...
31
3.6
108 YG1F_YEAST (P53214) Hypothetical 57.5 kDa protein in VMA7-RPS25A...
31
3.6
109 FTSK_ECOLI (P46889) DNA translocase ftsK
30
4.7
110 BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)
30
4.7
111 MAGL2_MOUSE (Q9QZ04) MAGE-like protein 2 (Protein nS7)
30
4.7
112 GSTA1_PIG (P51781) Glutathione S-transferase alpha M14 (EC 2.5.1...
30
4.7
113 GSTA3_RAT (P04904) Glutathione S-transferase alpha-3 (EC 2.5.1.1...
30
6.2
114 YLU2_PICAN (P34735) Hypothetical protein in LEU2 3'region (Fragm...
30
6.2
115 RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subun...
30
6.2
116 CRTS1_ONCHC (Q52QW3) Carotenoid isomerase 1, chloroplast precurs...
30
6.2
117 SYL_BRAJA (Q89WQ1) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-...
30
8.0
118 STCT_EMENI (Q00717) Putative sterigmatocystin biosynthesis prote...
30
8.0
119 CLIC3_MOUSE (Q9D7P7) Chloride intracellular channel protein 3
30
8.0
120 FLO1_YEAST (P32768) Flocculation protein FLO1 precursor (Floccul...
30
8.0
121 SIM1_YEAST (P40472) Protein SIM1 precursor
30
8.0
122 SYNPO_MOUSE (Q8CC35) Synaptopodin
30
8.0
123 ADRM1_HUMAN (Q16186) Adhesion-regulating molecule 1 precursor (1...
30
8.0
124 SAMD6_RAT (P0C0T2) Sterile alpha motif domain-containing protein...
30
8.0
125 PHLPP_MOUSE (Q8CHE4) PH domain leucine-rich repeat-containing pr...
30
8.0
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
(High molecular weight salivary mucin MG1) (Sublingual
gland mucin)
Length = 5703
Score = 42.0 bits (97), Expect = 0.002
Identities = 41/170 (24%), Positives = 66/170 (38%), Gaps = 3/170 (1%)
Frame = -2
Query: 518 SVTSLTPTISSYIGTTYAIAPSDRSTSPTLSPA-KNSFPPTASNSSRTCSCSTEAPRAAS 342
+ TS+TP SS +GTT+ + + T+S A +S P TA S+ + +T S
Sbjct: 2505 TATSVTPIPSSSLGTTWTRLSQTTTPTATMSTATPSSTPETAHTSTVLTATATTTGATGS 2564
Query: 341 WSSPGAVVNHFQIGGESLSCTNLTQKRAMARS*GSPG-RMRPPRWLHASSTNSTMTSD-S 168
++P + + T A SPG + PP W+ ++T +T S +
Sbjct: 2565 VATPSSTPG----TAHTTKVPTTTTTGFTATPSSSPGTALTPPVWISTTTTPTTRGSTVT 2620
Query: 167 ATGLPW*SSTGTFLCTGXXXXXXXXXXXXXXXXXXXSTPLMLSAHFTLRT 18
+ +P + T T L T TP L+ T T
Sbjct: 2621 PSSIPGTTHTATVLTTTTTTVATGSMATPSSSTQTSGTPPSLTTTATTIT 2670
Score = 34.7 bits (78), Expect = 0.25
Identities = 33/136 (24%), Positives = 50/136 (36%), Gaps = 12/136 (8%)
Frame = -2
Query: 521 SSVTSLTPTISSYIGTTYAIAPSDRSTSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAAS 342
S+ TS+TP SS +GTT + + T+S S P +++S + +S
Sbjct: 4260 STATSVTPIPSSTLGTTGTLPEQTTTPVATMSTIHPSSTPETTHTSTVLTTKATTRATSS 4319
Query: 341 WSSPGAVVNHFQIGGESLSCTNLTQKRAMARS*G---SPGRMRPPRWL---------HAS 198
S+P + G + T LT G +P W+ +
Sbjct: 4320 TSTPSST------PGTTWILTELTTAATTTAGTGPTATPSSTPGTTWILTELTTTATTTA 4373
Query: 197 STNSTMTSDSATGLPW 150
ST ST T S G W
Sbjct: 4374 STGSTATLSSTPGTTW 4389
Score = 30.8 bits (68), Expect = 3.6
Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 1/125 (0%)
Frame = -2
Query: 521 SSVTSLTPTISSYIGTTYAIAPSDRSTSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAA- 345
S+ TS TP SS + TT+ + + T+S S P +++S + + RA
Sbjct: 4686 STATSFTPIPSSTLWTTWTVPAQTTTPMSTMSTIHTSSTPETTHTSTVLTTTATMTRATN 4745
Query: 344 SWSSPGAVVNHFQIGGESLSCTNLTQKRAMARS*GSPGRMRPPRWLHASSTNSTMTSDSA 165
S ++P + + +I LT+ A + ++T ST T S
Sbjct: 4746 STATPSSTLGTTRI---------LTELTTTATT--------------TAATGSTATLSST 4782
Query: 164 TGLPW 150
G W
Sbjct: 4783 PGTTW 4787
Score = 30.8 bits (68), Expect = 3.6
Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 4/119 (3%)
Frame = -2
Query: 521 SSVTSLTPTISSYIGTTYAI---APSDRSTSPTLSPAKNSFPPTASNSSRTCSCSTEAPR 351
S+ TS TP SS +GTT P +T T+ P +S P T S+ + +T
Sbjct: 3033 STATSFTPIPSSTLGTTGTSQNRPPHPMATMSTIHP--SSTPETTHTSTVLTTKATTTRA 3090
Query: 350 AASWSSPGAVVNHFQIGGESLSCTNLTQKRAMARS*GSPGRMRPPRW-LHASSTNSTMT 177
+S S+P + I E + T A G+P W L ST +T+T
Sbjct: 3091 TSSMSTPSSTPGTTWILTELTTAATTT----AALPHGTPSSTPGTTWILTEPSTTATVT 3145
Score = 29.6 bits (65), Expect = 8.0
Identities = 38/153 (24%), Positives = 59/153 (38%), Gaps = 12/153 (7%)
Frame = -2
Query: 554 RPIHADRDGNLSSVTSLTPTISSYIGTTYAIAPSDRSTSPTLSPAKNSFPP----TASNS 387
+P+ SS T + T S I T I + +T+P+ +P PP TA+
Sbjct: 3866 QPVATGSMATPSSSTQTSGTPPSLITTATTITATGSTTNPSSTPGTTPIPPELTTTATTP 3925
Query: 386 SRTCSCSTEAPRAASWSSPGAVVNHFQIGGESLSCTNLTQKR-----AMARS*GSPGRMR 222
+ T S T + + +P G SLS ++ R A + + G+
Sbjct: 3926 AATSSTVTPSSALGTTHTPPVPNTTATTHGRSLSPSSPHTVRTAWTSATSGTLGTTHITE 3985
Query: 221 PPRWLH---ASSTNSTMTSDSATGLPW*SSTGT 132
P A++T +T TS A P SS T
Sbjct: 3986 PSTGTSHTPAATTGTTTTSTPALSSPHPSSRTT 4018
Score = 29.6 bits (65), Expect = 8.0
Identities = 31/133 (23%), Positives = 48/133 (36%), Gaps = 13/133 (9%)
Frame = -2
Query: 512 TSLTPTISSYIGTTYAIAPSDRSTSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASWSS 333
T+ PT TT + PT SP PP ++ + T S +PR S
Sbjct: 1609 TTPPPTTELETATTTTTQALFSTPQPTSSPGLTRAPPASTTAVPTLSEGLTSPRYTSTLG 1668
Query: 332 PGAVVNHFQIGGES------LSCTNLTQKRAMARS*GSPGRMRP-------PRWLHASST 192
Q G + ++ + L + A+ + GS G RP P + S
Sbjct: 1669 TATTGGPRQSAGSTEPTVPGVATSTLPTRSALPGTTGSLGTWRPSQPPTLAPTTMATSRA 1728
Query: 191 NSTMTSDSATGLP 153
T T+ +A+ P
Sbjct: 1729 RPTGTASTASKEP 1741
>RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
(RNA polymerase II subunit 1) (B220)
Length = 1733
Score = 35.0 bits (79), Expect = 0.19
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ A +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1646 SYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSP 1705
Query: 338 SSPG 327
+SPG
Sbjct: 1706 TSPG 1709
Score = 33.5 bits (75), Expect = 0.56
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + A S
Sbjct: 1604 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1663
Query: 338 SSP 330
+SP
Sbjct: 1664 TSP 1666
Score = 32.7 bits (73), Expect = 0.95
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1611 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSP 1670
Query: 338 SSP 330
+SP
Sbjct: 1671 TSP 1673
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT +Y T+ + +P+ S TSP+ SP S+ PT+ N S T + S
Sbjct: 1653 SYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSP 1712
Query: 338 SSP 330
SP
Sbjct: 1713 GSP 1715
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1597 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1656
Query: 338 SSP 330
+SP
Sbjct: 1657 TSP 1659
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1590 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1649
Query: 338 SSP 330
+SP
Sbjct: 1650 TSP 1652
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1583 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1642
Query: 338 SSP 330
+SP
Sbjct: 1643 TSP 1645
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1576 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1635
Query: 338 SSP 330
+SP
Sbjct: 1636 TSP 1638
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1569 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1628
Query: 338 SSP 330
+SP
Sbjct: 1629 TSP 1631
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1562 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1621
Query: 338 SSP 330
+SP
Sbjct: 1622 TSP 1624
Score = 32.0 bits (71), Expect = 1.6
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP SP S+ PT+ + S T + + S
Sbjct: 1632 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1691
Query: 338 SSP 330
+SP
Sbjct: 1692 TSP 1694
Score = 31.6 bits (70), Expect = 2.1
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = -2
Query: 518 SVTSLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRA 348
S +PT +Y T+ A +P+ S TSP+ SP S+ PT+ + S T + +
Sbjct: 1538 SSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1597
Query: 347 ASWSSP 330
S +SP
Sbjct: 1598 YSPTSP 1603
Score = 31.2 bits (69), Expect = 2.8
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP ++ PT+ + S T + + S
Sbjct: 1625 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1684
Query: 338 SSP 330
+SP
Sbjct: 1685 TSP 1687
Score = 31.2 bits (69), Expect = 2.8
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ S T + + S
Sbjct: 1618 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSP 1677
Query: 338 SSP 330
+SP
Sbjct: 1678 TSP 1680
>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC|
2.7.7.6) (RPB1) (Fragment)
Length = 467
Score = 35.0 bits (79), Expect = 0.19
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ N S T T + S
Sbjct: 202 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSP 261
Query: 338 SSP 330
+SP
Sbjct: 262 TSP 264
Score = 32.7 bits (73), Expect = 0.95
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = -2
Query: 551 PIHADRDGNLSSVT-SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSS 384
P ++ N S + S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S
Sbjct: 124 PSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 183
Query: 383 RTCSCSTEAPRAASWSSP 330
T + + S +SP
Sbjct: 184 PTSPSYSPTSPSYSPTSP 201
Score = 32.3 bits (72), Expect = 1.2
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Frame = -2
Query: 551 PIHADRDGNLSSVT-SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSS 384
P ++ N S + + TPT SY T+ + +P+ + TSP SP S+ PT+ + S
Sbjct: 236 PSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYS 295
Query: 383 RTC-SCSTEAPR 351
T S S +PR
Sbjct: 296 PTSPSYSPSSPR 307
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 181 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 240
Query: 338 SSP 330
+SP
Sbjct: 241 TSP 243
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 174 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 233
Query: 338 SSP 330
+SP
Sbjct: 234 TSP 236
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 167 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 226
Query: 338 SSP 330
+SP
Sbjct: 227 TSP 229
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 160 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 219
Query: 338 SSP 330
+SP
Sbjct: 220 TSP 222
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 153 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 212
Query: 338 SSP 330
+SP
Sbjct: 213 TSP 215
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 146 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 205
Query: 338 SSP 330
+SP
Sbjct: 206 TSP 208
Score = 32.0 bits (71), Expect = 1.6
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP ++ PT+ N + T + + S
Sbjct: 209 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSP 268
Query: 338 SSP 330
+SP
Sbjct: 269 TSP 271
Score = 31.2 bits (69), Expect = 2.8
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 118 SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 177
Query: 338 SSP 330
+SP
Sbjct: 178 TSP 180
Score = 31.2 bits (69), Expect = 2.8
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ + TSP+ SP S+ PT+ + S T + + S
Sbjct: 111 SYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 170
Query: 338 SSP 330
+SP
Sbjct: 171 TSP 173
Score = 30.8 bits (68), Expect = 3.6
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSD---RSTSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +PS SPT +P+ S+ P++ + S T T + S
Sbjct: 286 SYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSP 345
Query: 338 SSP 330
SSP
Sbjct: 346 SSP 348
Score = 30.4 bits (67), Expect = 4.7
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT +Y T+ P+ S TSP+ SP ++ PT+ N S T + + S
Sbjct: 237 SYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSP 296
Query: 338 SSP 330
+SP
Sbjct: 297 TSP 299
Score = 30.0 bits (66), Expect = 6.2
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ +P+ + TSP+ SP S+ PT+ N + T + + S
Sbjct: 230 SYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSP 289
Query: 338 SSP 330
+SP
Sbjct: 290 TSP 292
>VGP3_EBV (P03200) Envelope glycoprotein GP340/GP220 (Membrane antigen) (MA)|
Length = 907
Score = 35.0 bits (79), Expect = 0.19
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = -2
Query: 539 DRDGNLSSVTSLTPTISSYIGTTYAIAPSDRSTSPT---LSPAKNSFPPTASNSSRTCSC 369
D + S VT+ TP +S T P+ +TSPT +P N+ PT +S T +
Sbjct: 505 DMTSSTSPVTTPTPNATS--PTPAVTTPTPNATSPTPAVTTPTPNATSPTLGKTSPTSAV 562
Query: 368 STEAPRAAS 342
+T P A S
Sbjct: 563 TTPTPNATS 571
Score = 34.7 bits (78), Expect = 0.25
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Frame = -2
Query: 503 TPTISSYIGTTYAIAPSDRSTSPTL----------SPAKNSFPPTASNSSRTCSCSTEAP 354
+PT+ T+ P+ +TSPTL +P N+ PT +S T + +T P
Sbjct: 550 SPTLGKTSPTSAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTLGKTSPTSAVTTPTP 609
Query: 353 RA----ASWSSPGAVVNHFQIGGES 291
A +SP A + +GG S
Sbjct: 610 NATGPTVGETSPQANATNHTLGGTS 634
Score = 32.3 bits (72), Expect = 1.2
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 10/64 (15%)
Frame = -2
Query: 503 TPTISSYIGTTYAIAPSDRSTSPTL----------SPAKNSFPPTASNSSRTCSCSTEAP 354
TPT ++ T P+ +TSPTL +P N+ PT +S T + +T P
Sbjct: 529 TPTPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTLGKTSPTSAVTTPTP 588
Query: 353 RAAS 342
A S
Sbjct: 589 NATS 592
>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
(RPB1)
Length = 1970
Score = 35.0 bits (79), Expect = 0.19
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ N S T T + S
Sbjct: 1705 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSP 1764
Query: 338 SSP 330
+SP
Sbjct: 1765 TSP 1767
Score = 32.7 bits (73), Expect = 0.95
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = -2
Query: 551 PIHADRDGNLSSVT-SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSS 384
P ++ N S + S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S
Sbjct: 1627 PSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1686
Query: 383 RTCSCSTEAPRAASWSSP 330
T + + S +SP
Sbjct: 1687 PTSPSYSPTSPSYSPTSP 1704
Score = 32.3 bits (72), Expect = 1.2
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Frame = -2
Query: 551 PIHADRDGNLSSVT-SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSS 384
P ++ N S + + TPT SY T+ + +P+ + TSP SP S+ PT+ + S
Sbjct: 1739 PSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYS 1798
Query: 383 RTC-SCSTEAPR 351
T S S +PR
Sbjct: 1799 PTSPSYSPSSPR 1810
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1684 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1743
Query: 338 SSP 330
+SP
Sbjct: 1744 TSP 1746
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1677 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1736
Query: 338 SSP 330
+SP
Sbjct: 1737 TSP 1739
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1670 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1729
Query: 338 SSP 330
+SP
Sbjct: 1730 TSP 1732
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1663 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1722
Query: 338 SSP 330
+SP
Sbjct: 1723 TSP 1725
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1656 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1715
Query: 338 SSP 330
+SP
Sbjct: 1716 TSP 1718
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1649 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1708
Query: 338 SSP 330
+SP
Sbjct: 1709 TSP 1711
Score = 32.0 bits (71), Expect = 1.6
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP ++ PT+ N + T + + S
Sbjct: 1712 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSP 1771
Query: 338 SSP 330
+SP
Sbjct: 1772 TSP 1774
Score = 31.2 bits (69), Expect = 2.8
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1621 SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1680
Query: 338 SSP 330
+SP
Sbjct: 1681 TSP 1683
Score = 31.2 bits (69), Expect = 2.8
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ + TSP+ SP S+ PT+ + S T + + S
Sbjct: 1614 SYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1673
Query: 338 SSP 330
+SP
Sbjct: 1674 TSP 1676
Score = 30.8 bits (68), Expect = 3.6
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSD---RSTSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +PS SPT +P+ S+ P++ + S T T + S
Sbjct: 1789 SYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSP 1848
Query: 338 SSP 330
SSP
Sbjct: 1849 SSP 1851
Score = 30.4 bits (67), Expect = 4.7
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT +Y T+ P+ S TSP+ SP ++ PT+ N S T + + S
Sbjct: 1740 SYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSP 1799
Query: 338 SSP 330
+SP
Sbjct: 1800 TSP 1802
Score = 30.0 bits (66), Expect = 6.2
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ +P+ + TSP+ SP S+ PT+ N + T + + S
Sbjct: 1733 SYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSP 1792
Query: 338 SSP 330
+SP
Sbjct: 1793 TSP 1795
>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
(RPB1)
Length = 1970
Score = 35.0 bits (79), Expect = 0.19
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ N S T T + S
Sbjct: 1705 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSP 1764
Query: 338 SSP 330
+SP
Sbjct: 1765 TSP 1767
Score = 32.7 bits (73), Expect = 0.95
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = -2
Query: 551 PIHADRDGNLSSVT-SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSS 384
P ++ N S + S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S
Sbjct: 1627 PSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1686
Query: 383 RTCSCSTEAPRAASWSSP 330
T + + S +SP
Sbjct: 1687 PTSPSYSPTSPSYSPTSP 1704
Score = 32.3 bits (72), Expect = 1.2
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Frame = -2
Query: 551 PIHADRDGNLSSVT-SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSS 384
P ++ N S + + TPT SY T+ + +P+ + TSP SP S+ PT+ + S
Sbjct: 1739 PSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYS 1798
Query: 383 RTC-SCSTEAPR 351
T S S +PR
Sbjct: 1799 PTSPSYSPSSPR 1810
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1684 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1743
Query: 338 SSP 330
+SP
Sbjct: 1744 TSP 1746
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1677 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1736
Query: 338 SSP 330
+SP
Sbjct: 1737 TSP 1739
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1670 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1729
Query: 338 SSP 330
+SP
Sbjct: 1730 TSP 1732
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1663 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1722
Query: 338 SSP 330
+SP
Sbjct: 1723 TSP 1725
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1656 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1715
Query: 338 SSP 330
+SP
Sbjct: 1716 TSP 1718
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1649 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1708
Query: 338 SSP 330
+SP
Sbjct: 1709 TSP 1711
Score = 32.0 bits (71), Expect = 1.6
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP ++ PT+ N + T + + S
Sbjct: 1712 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSP 1771
Query: 338 SSP 330
+SP
Sbjct: 1772 TSP 1774
Score = 31.2 bits (69), Expect = 2.8
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1621 SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1680
Query: 338 SSP 330
+SP
Sbjct: 1681 TSP 1683
Score = 31.2 bits (69), Expect = 2.8
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ + TSP+ SP S+ PT+ + S T + + S
Sbjct: 1614 SYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1673
Query: 338 SSP 330
+SP
Sbjct: 1674 TSP 1676
Score = 30.8 bits (68), Expect = 3.6
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSD---RSTSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +PS SPT +P+ S+ P++ + S T T + S
Sbjct: 1789 SYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSP 1848
Query: 338 SSP 330
SSP
Sbjct: 1849 SSP 1851
Score = 30.4 bits (67), Expect = 4.7
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT +Y T+ P+ S TSP+ SP ++ PT+ N S T + + S
Sbjct: 1740 SYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSP 1799
Query: 338 SSP 330
+SP
Sbjct: 1800 TSP 1802
Score = 30.0 bits (66), Expect = 6.2
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ +P+ + TSP+ SP S+ PT+ N + T + + S
Sbjct: 1733 SYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSP 1792
Query: 338 SSP 330
+SP
Sbjct: 1793 TSP 1795
>RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
Length = 1853
Score = 34.7 bits (78), Expect = 0.25
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = -2
Query: 563 PKNRPIHADRDGNLSSVTSLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTAS 393
P P G S +PT SY T+ + +P+ S TSP+ SP S+ PT+
Sbjct: 1597 PSYSPTSPAHHGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1656
Query: 392 NSSRTCSCSTEAPRAASWSSP 330
+ S T + + S SSP
Sbjct: 1657 SYSPTSPSYSPTSPSYSPSSP 1677
Score = 33.1 bits (74), Expect = 0.73
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTC-SCSTEAPR 351
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T S S +PR
Sbjct: 1622 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPR 1678
Score = 32.0 bits (71), Expect = 1.6
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSD---RSTSPTLSPAKNSFPPTA---SNSSRTCSCSTEAPRA 348
S +PT SY T+ + +PS TSPT SP ++ PT+ S +S T S ++ +
Sbjct: 1657 SYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEG 1716
Query: 347 ASWSSP 330
S SSP
Sbjct: 1717 YSPSSP 1722
Score = 30.0 bits (66), Expect = 6.2
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP+ + PT+ S T T +P + ++
Sbjct: 1643 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPT--SPTYSPTSPTY 1700
Query: 338 S 336
S
Sbjct: 1701 S 1701
Score = 30.0 bits (66), Expect = 6.2
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ P++ S T T +P + ++
Sbjct: 1636 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPT--SPTYSPTSPTY 1693
Query: 338 S 336
S
Sbjct: 1694 S 1694
>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
Length = 1840
Score = 34.7 bits (78), Expect = 0.25
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = -2
Query: 503 TPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASWSS 333
+PT +Y T+ A +P+ S TSP+ SP S+ PT+ + S T + A S +S
Sbjct: 1644 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1703
Query: 332 PG 327
PG
Sbjct: 1704 PG 1705
Score = 32.7 bits (73), Expect = 0.95
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ S T + A S
Sbjct: 1600 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSP 1659
Query: 338 SSP 330
+SP
Sbjct: 1660 TSP 1662
Score = 32.7 bits (73), Expect = 0.95
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = -2
Query: 503 TPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASWSS 333
+PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + A S +S
Sbjct: 1595 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 1654
Query: 332 P 330
P
Sbjct: 1655 P 1655
Score = 32.0 bits (71), Expect = 1.6
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ A +P+ + TSP SP S+ PT+ + S T + + S
Sbjct: 1628 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1687
Query: 338 SSP 330
+SP
Sbjct: 1688 TSP 1690
Score = 31.2 bits (69), Expect = 2.8
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT +Y T+ A +P+ + TSP+ SP S+ PT+ + S T + + S
Sbjct: 1635 SYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1694
Query: 338 SSP 330
+SP
Sbjct: 1695 TSP 1697
Score = 30.4 bits (67), Expect = 4.7
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP ++ PT+ S T + + S
Sbjct: 1607 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSP 1666
Query: 338 SSP 330
+SP
Sbjct: 1667 TSP 1669
Score = 30.0 bits (66), Expect = 6.2
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = -2
Query: 503 TPTISSYIGTTYAIAPSDRSTSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASWSSP 330
+PT SY T+ PS TSP+ SP S+ PT+ + S T + S +SP
Sbjct: 1658 SPTSPSYSPTS----PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP 1711
Score = 29.6 bits (65), Expect = 8.0
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRT 378
S +PT SY T+ + +P+ S TSP+ SP ++ PT+ S T
Sbjct: 1663 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT 1709
Score = 29.6 bits (65), Expect = 8.0
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP SP ++ PT+ S T + + S
Sbjct: 1614 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1673
Query: 338 SSP 330
+SP
Sbjct: 1674 TSP 1676
>RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subunit (EC|
2.7.7.6) (Fragment)
Length = 902
Score = 33.9 bits (76), Expect = 0.43
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + + S
Sbjct: 811 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSP 870
Query: 338 SSP 330
SSP
Sbjct: 871 SSP 873
Score = 33.5 bits (75), Expect = 0.56
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 804 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 863
Query: 338 SSP 330
SSP
Sbjct: 864 SSP 866
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S + + + + S
Sbjct: 818 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSP 877
Query: 338 SSP 330
SSP
Sbjct: 878 SSP 880
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 797 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 856
Query: 338 SSP 330
+SP
Sbjct: 857 TSP 859
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 790 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 849
Query: 338 SSP 330
+SP
Sbjct: 850 TSP 852
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 783 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 842
Query: 338 SSP 330
+SP
Sbjct: 843 TSP 845
Score = 31.2 bits (69), Expect = 2.8
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 762 SYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 821
Query: 338 SSP 330
+SP
Sbjct: 822 TSP 824
Score = 31.2 bits (69), Expect = 2.8
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRSTSPT---LSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S SPT SP S+ PT+ + S T + + S
Sbjct: 748 SYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 807
Query: 338 SSP 330
+SP
Sbjct: 808 TSP 810
Score = 30.8 bits (68), Expect = 3.6
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ P++ + S + + + + S
Sbjct: 825 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPSYSP 884
Query: 338 SSP 330
SSP
Sbjct: 885 SSP 887
Score = 30.8 bits (68), Expect = 3.6
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSD---RSTSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ TSP+ SP S+ PT+ + S T + + S
Sbjct: 755 SYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 814
Query: 338 SSP 330
+SP
Sbjct: 815 TSP 817
Score = 30.8 bits (68), Expect = 3.6
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ S T + + S
Sbjct: 734 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSP 793
Query: 338 SSP 330
+SP
Sbjct: 794 TSP 796
Score = 30.8 bits (68), Expect = 3.6
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = -2
Query: 503 TPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASWSS 333
+PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S +S
Sbjct: 729 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTS 788
Query: 332 P 330
P
Sbjct: 789 P 789
Score = 30.0 bits (66), Expect = 6.2
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP + PT+ + S T + + S
Sbjct: 741 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSP 800
Query: 338 SSP 330
+SP
Sbjct: 801 TSP 803
>RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
(RNA polymerase II subunit 1)
Length = 1599
Score = 33.1 bits (74), Expect = 0.73
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = -2
Query: 551 PIHADRDGNLSSVTSLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSR 381
P H + + L+PT SY T+ + +P+ S TSP+ SP S+ PT+ + S
Sbjct: 1451 PTHLEMAYSRDLGERLSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1510
Query: 380 TCSCSTEAPRAASWSSP 330
T + + S +SP
Sbjct: 1511 TSPSYSPTSPSYSPTSP 1527
Score = 32.7 bits (73), Expect = 0.95
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1507 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1566
Query: 338 SSPGAVVN 315
+SP V+
Sbjct: 1567 TSPSYSVS 1574
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1500 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1559
Query: 338 SSP 330
+SP
Sbjct: 1560 TSP 1562
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1493 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1552
Query: 338 SSP 330
+SP
Sbjct: 1553 TSP 1555
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1486 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1545
Query: 338 SSP 330
+SP
Sbjct: 1546 TSP 1548
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1479 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1538
Query: 338 SSP 330
+SP
Sbjct: 1539 TSP 1541
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1472 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1531
Query: 338 SSP 330
+SP
Sbjct: 1532 TSP 1534
Score = 30.4 bits (67), Expect = 4.7
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCS 372
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S + S
Sbjct: 1528 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSVSMS 1576
>RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
(RNA polymerase II subunit 1)
Length = 1752
Score = 33.1 bits (74), Expect = 0.73
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1598 SYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1657
Query: 338 SSP 330
+SP
Sbjct: 1658 TSP 1660
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1689 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1748
Query: 338 SSP 330
+SP
Sbjct: 1749 TSP 1751
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1682 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1741
Query: 338 SSP 330
+SP
Sbjct: 1742 TSP 1744
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1675 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1734
Query: 338 SSP 330
+SP
Sbjct: 1735 TSP 1737
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1668 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1727
Query: 338 SSP 330
+SP
Sbjct: 1728 TSP 1730
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1661 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1720
Query: 338 SSP 330
+SP
Sbjct: 1721 TSP 1723
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1654 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1713
Query: 338 SSP 330
+SP
Sbjct: 1714 TSP 1716
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1647 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1706
Query: 338 SSP 330
+SP
Sbjct: 1707 TSP 1709
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1640 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1699
Query: 338 SSP 330
+SP
Sbjct: 1700 TSP 1702
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1633 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1692
Query: 338 SSP 330
+SP
Sbjct: 1693 TSP 1695
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1626 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1685
Query: 338 SSP 330
+SP
Sbjct: 1686 TSP 1688
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1619 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1678
Query: 338 SSP 330
+SP
Sbjct: 1679 TSP 1681
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1612 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1671
Query: 338 SSP 330
+SP
Sbjct: 1672 TSP 1674
Score = 32.3 bits (72), Expect = 1.2
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTT---YAIAPSDRSTSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ A +PS TSP+ SP S+ PT+ + S T + + S
Sbjct: 1591 SYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1650
Query: 338 SSP 330
+SP
Sbjct: 1651 TSP 1653
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1584 SYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1643
Query: 338 SSP 330
+SP
Sbjct: 1644 TSP 1646
Score = 30.4 bits (67), Expect = 4.7
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = -2
Query: 551 PIHADRDGNLSSVTSLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSR 381
P ++ + S S +PT SY T+ + +P+ S TSP+ S S+ PT+ + S
Sbjct: 1563 PGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSP 1622
Query: 380 TCSCSTEAPRAASWSSP 330
T + + S +SP
Sbjct: 1623 TSPSYSPTSPSYSPTSP 1639
Score = 30.0 bits (66), Expect = 6.2
Identities = 21/74 (28%), Positives = 34/74 (45%)
Frame = -2
Query: 551 PIHADRDGNLSSVTSLTPTISSYIGTTYAIAPSDRSTSPTLSPAKNSFPPTASNSSRTCS 372
P ++ S+ + P+ SY T+ PS TSP+ SP S+ PT+ + S T
Sbjct: 1556 PSYSPSSPGYSTSPAYMPSSPSYSPTS----PSYSPTSPSYSPTSPSYSPTSPSYSATSP 1611
Query: 371 CSTEAPRAASWSSP 330
+ + S +SP
Sbjct: 1612 SYSPTSPSYSPTSP 1625
>RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
(RNA polymerase II subunit 1)
Length = 1745
Score = 33.1 bits (74), Expect = 0.73
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T +PR+ S+
Sbjct: 1670 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT--SPQYSPRSPSY 1727
Query: 338 S 336
S
Sbjct: 1728 S 1728
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1656 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1715
Query: 338 SSP 330
+SP
Sbjct: 1716 TSP 1718
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1649 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1708
Query: 338 SSP 330
+SP
Sbjct: 1709 TSP 1711
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1642 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1701
Query: 338 SSP 330
+SP
Sbjct: 1702 TSP 1704
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1635 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1694
Query: 338 SSP 330
+SP
Sbjct: 1695 TSP 1697
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1628 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1687
Query: 338 SSP 330
+SP
Sbjct: 1688 TSP 1690
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1621 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1680
Query: 338 SSP 330
+SP
Sbjct: 1681 TSP 1683
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1614 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1673
Query: 338 SSP 330
+SP
Sbjct: 1674 TSP 1676
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1607 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1666
Query: 338 SSP 330
+SP
Sbjct: 1667 TSP 1669
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1600 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1659
Query: 338 SSP 330
+SP
Sbjct: 1660 TSP 1662
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1593 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1652
Query: 338 SSP 330
+SP
Sbjct: 1653 TSP 1655
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1586 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1645
Query: 338 SSP 330
+SP
Sbjct: 1646 TSP 1648
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1579 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1638
Query: 338 SSP 330
+SP
Sbjct: 1639 TSP 1641
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1572 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1631
Query: 338 SSP 330
+SP
Sbjct: 1632 TSP 1634
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1565 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1624
Query: 338 SSP 330
+SP
Sbjct: 1625 TSP 1627
Score = 32.3 bits (72), Expect = 1.2
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +P+ S TSP+ SP S+ PT+ + S T + + S
Sbjct: 1558 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1617
Query: 338 SSP 330
+SP
Sbjct: 1618 TSP 1620
Score = 30.0 bits (66), Expect = 6.2
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = -2
Query: 530 GNLSSVTSLTPTISSYIGTTYAIAPSDRSTSPTLSPAKNSFPPTASNSSRTCSCSTEAPR 351
G++SS +PT +Y T+ PS TSP+ SP S+ PT+ + S T +
Sbjct: 1538 GDVSS-PGFSPTSPAYSPTS----PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1592
Query: 350 AASWSSP 330
+ S +SP
Sbjct: 1593 SYSPTSP 1599
>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
Length = 1852
Score = 32.7 bits (73), Expect = 0.95
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRSTSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASWSSP 330
S +PT SY T+ PS TSP+ SP S+ PT+ + S T + + + S SSP
Sbjct: 1611 SYSPTSPSYSPTS----PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSP 1666
Score = 31.6 bits (70), Expect = 2.1
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS----------TSPTLSPAKNSFPPTASNSSRTCSCSTE 360
S +PT SY ++ + +PS S TSPT SP ++ PT+ S T T
Sbjct: 1646 SYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPT--SPTY 1703
Query: 359 APRAASWSSPG 327
+P + S+ S G
Sbjct: 1704 SPTSPSYESGG 1714
Score = 31.6 bits (70), Expect = 2.1
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = -2
Query: 503 TPTISSYIGTTYA-----IAPSDRSTSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
+PT SY T+ A ++PS TSP+ SP S+ PT+ + S T + + S
Sbjct: 1590 SPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1649
Query: 338 SSP 330
+SP
Sbjct: 1650 TSP 1652
Score = 30.8 bits (68), Expect = 3.6
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTA-SNSSRTCSCSTEAPR 351
S +PT SY T+ + +P+ S TSP+ SP S+ P++ S S + S S +PR
Sbjct: 1618 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPR 1674
Score = 29.6 bits (65), Expect = 8.0
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = -2
Query: 509 SLTPTISSYIGTTYAIAPSDRS---TSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASW 339
S +PT SY T+ + +PS S +SP+ SP+ + PT+ S T T +P + ++
Sbjct: 1639 SYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPT--SPTYSPTSPTY 1696
Query: 338 S 336
S
Sbjct: 1697 S 1697
>WSC4_YEAST (P38739) Cell wall integrity and stress response component 4|
precursor
Length = 605
Score = 32.3 bits (72), Expect = 1.2
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 16/135 (11%)
Frame = -2
Query: 518 SVTSLTPTISSYIGTTYAIAPSDRSTSPT-LSPAKNSFPP-----------TASNSSRTC 375
S +S+T + S+ I T I+P+ STS T L+ A S P T++ S +
Sbjct: 132 SSSSITSSSSTSIVDTTTISPTLTSTSTTPLTTASTSTTPSTDITSALPTTTSTKLSTSI 191
Query: 374 SCSTEAPRAASWSSPGAVVNHFQIGGESLSCTNLTQKRAMARS*GSPGRMRPPRW----L 207
ST + + + S+ + + + + T+ T ++ S S P +
Sbjct: 192 PTSTTSSTSTTTSTSSSTSTTVSVTSSTSTTTSTTSSTLISTSTSSSSSSTPTTTSSAPI 251
Query: 206 HASSTNSTMTSDSAT 162
S+T+ST TS S T
Sbjct: 252 STSTTSSTSTSTSTT 266
Score = 31.2 bits (69), Expect = 2.8
Identities = 30/120 (25%), Positives = 52/120 (43%)
Frame = -2
Query: 521 SSVTSLTPTISSYIGTTYAIAPSDRSTSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAAS 342
+ +TS PT +S +T + STS T S + ++ + SS + + ST + S
Sbjct: 173 TDITSALPTTTSTKLSTSIPTSTTSSTSTTTSTSSSTSTTVSVTSSTSTTTSTTSSTLIS 232
Query: 341 WSSPGAVVNHFQIGGESLSCTNLTQKRAMARS*GSPGRMRPPRWLHASSTNSTMTSDSAT 162
S+ + + + T+ T + + S SP P SS+N+T TS + T
Sbjct: 233 TSTSSSSSSTPTTTSSAPISTSTTSSTSTSTSTTSPTSSSAP----TSSSNTTPTSTTFT 288
Score = 30.4 bits (67), Expect = 4.7
Identities = 19/82 (23%), Positives = 41/82 (50%)
Frame = -2
Query: 515 VTSLTPTISSYIGTTYAIAPSDRSTSPTLSPAKNSFPPTASNSSRTCSCSTEAPRAASWS 336
+++ T + SS TT + AP ST+ + S + ++ PT+S++ + S +T + +
Sbjct: 231 ISTSTSSSSSSTPTTTSSAPISTSTTSSTSTSTSTTSPTSSSAPTSSSNTTPTSTTFTTT 290
Query: 335 SPGAVVNHFQIGGESLSCTNLT 270
SP + + S + + +T
Sbjct: 291 SPSTAPSSTTVTYTSTTASPIT 312
>PHLPP_MOUSE (Q8CHE4) PH domain leucine-rich repeat-containing protein|
phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat
protein phosphatase) (Pleckstrin homology
domain-containing family E protein 1) (Suprachiasmatic
nucleus circadian oscillatory
Length = 1687
Score = 29.6 bits (65), Expect = 8.0
Identities = 35/121 (28%), Positives = 47/121 (38%), Gaps = 6/121 (4%)
Frame = -2
Query: 461 APSDRSTSPTLSPAKNSFP----PTASNSSRTCSCSTEA--PRAASWSSPGAVVNHFQIG 300
APSD S + S P P + S + S S E+ R +SS G G
Sbjct: 288 APSDSSPGELFAGGPGSPPRAPRPASDTESFSLSPSAESVSDRLDPYSSGG--------G 339
Query: 299 GESLSCTNLTQKRAMARS*GSPGRMRPPRWLHASSTNSTMTSDSATGLPW*SSTGTFLCT 120
G S S L AM G P + RPP + T++ + + TG+ STG
Sbjct: 340 GSSSSSEELEADPAMPHRPGRPAQPRPP----SPKTSALLQPKAPTGV---DSTGVIAGE 392
Query: 119 G 117
G
Sbjct: 393 G 393
Database: uniprot_sprot.fasta
Posted date: May 25, 2006 5:36 PM
Number of letters in database: 80,573,946
Number of sequences in database: 219,361
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,004,571
Number of Sequences: 219361
Number of extensions: 1490478
Number of successful extensions: 7416
Number of sequences better than 10.0: 125
Number of HSP's better than 10.0 without gapping: 6351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7041
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6086476506
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)