ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd1m15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_196821.1| Oryza sativa (japonica cultivar-group) putative PGPD14 protein (pollen germination related protein) (OSJNBa0018F16.5), mRNA Length = 1263 Score = 371 bits (187), Expect = 1e-99 Identities = 289/323 (89%) Strand = Plus / Plus Query: 179 gagcagcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggc 238 |||||||||||||||||||||||||||||| | |||||||| ||||||| ||||||||| Sbjct: 153 gagcagcacggctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggc 212 Query: 239 gaggtcttcggctgccggcattgccacaaccaagctaagaattcgctcgaggtggacgtc 298 ||||| ||||||||| |||||||||||||| | || ||||||||||||||| | | || Sbjct: 213 gaggtgttcggctgcaggcattgccacaacgaggccaagaattcgctcgagatccatctc 272 Query: 299 ctcgaccggcacgacatcccccgccacgaaatcagcaaggtcatctgctctctctgcaac 358 ||||| ||||| ||||||||||||||||||| ||||| ||||||||||||||| || Sbjct: 273 aatgaccgtcacgagatcccccgccacgaaatcaagaaggttatctgctctctctgcgac 332 Query: 359 aaagaacaggatgtgcagaagaactgctccggttgtggggcatgcatggggaaatacttc 418 |||||||||||||| || || |||| || |||||||||||||||||||||||||||||| Sbjct: 333 aaagaacaggatgtacaacagtactgttctggttgtggggcatgcatggggaaatacttc 392 Query: 419 tgtgaaaaatgcaacttctttgacgatgatatctcaaagaaccagtatcactgcgatgga 478 || |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct: 393 tgcgaaaaatgcaacttctttgatgatgatgtctcaaagaaccagtatcactgcgatgga 452 Query: 479 tgcggcatctgcagaactggtgg 501 |||||||| |||||||||||||| Sbjct: 453 tgcggcatatgcagaactggtgg 475
>dbj|AK104810.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G01, full insert sequence Length = 1284 Score = 371 bits (187), Expect = 1e-99 Identities = 289/323 (89%) Strand = Plus / Plus Query: 179 gagcagcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggc 238 |||||||||||||||||||||||||||||| | |||||||| ||||||| ||||||||| Sbjct: 163 gagcagcacggctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggc 222 Query: 239 gaggtcttcggctgccggcattgccacaaccaagctaagaattcgctcgaggtggacgtc 298 ||||| ||||||||| |||||||||||||| | || ||||||||||||||| | | || Sbjct: 223 gaggtgttcggctgcaggcattgccacaacgaggccaagaattcgctcgagatccatctc 282 Query: 299 ctcgaccggcacgacatcccccgccacgaaatcagcaaggtcatctgctctctctgcaac 358 ||||| ||||| ||||||||||||||||||| ||||| ||||||||||||||| || Sbjct: 283 aatgaccgtcacgagatcccccgccacgaaatcaagaaggttatctgctctctctgcgac 342 Query: 359 aaagaacaggatgtgcagaagaactgctccggttgtggggcatgcatggggaaatacttc 418 |||||||||||||| || || |||| || |||||||||||||||||||||||||||||| Sbjct: 343 aaagaacaggatgtacaacagtactgttctggttgtggggcatgcatggggaaatacttc 402 Query: 419 tgtgaaaaatgcaacttctttgacgatgatatctcaaagaaccagtatcactgcgatgga 478 || |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct: 403 tgcgaaaaatgcaacttctttgatgatgatgtctcaaagaaccagtatcactgcgatgga 462 Query: 479 tgcggcatctgcagaactggtgg 501 |||||||| |||||||||||||| Sbjct: 463 tgcggcatatgcagaactggtgg 485
>dbj|AK072693.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142C17, full insert sequence Length = 1095 Score = 371 bits (187), Expect = 1e-99 Identities = 289/323 (89%) Strand = Plus / Plus Query: 179 gagcagcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggc 238 |||||||||||||||||||||||||||||| | |||||||| ||||||| ||||||||| Sbjct: 164 gagcagcacggctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggc 223 Query: 239 gaggtcttcggctgccggcattgccacaaccaagctaagaattcgctcgaggtggacgtc 298 ||||| ||||||||| |||||||||||||| | || ||||||||||||||| | | || Sbjct: 224 gaggtgttcggctgcaggcattgccacaacgaggccaagaattcgctcgagatccatctc 283 Query: 299 ctcgaccggcacgacatcccccgccacgaaatcagcaaggtcatctgctctctctgcaac 358 ||||| ||||| ||||||||||||||||||| ||||| ||||||||||||||| || Sbjct: 284 aatgaccgtcacgagatcccccgccacgaaatcaagaaggttatctgctctctctgcgac 343 Query: 359 aaagaacaggatgtgcagaagaactgctccggttgtggggcatgcatggggaaatacttc 418 |||||||||||||| || || |||| || |||||||||||||||||||||||||||||| Sbjct: 344 aaagaacaggatgtacaacagtactgttctggttgtggggcatgcatggggaaatacttc 403 Query: 419 tgtgaaaaatgcaacttctttgacgatgatatctcaaagaaccagtatcactgcgatgga 478 || |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct: 404 tgcgaaaaatgcaacttctttgatgatgatgtctcaaagaaccagtatcactgcgatgga 463 Query: 479 tgcggcatctgcagaactggtgg 501 |||||||| |||||||||||||| Sbjct: 464 tgcggcatatgcagaactggtgg 486
>dbj|AK071137.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077E12, full insert sequence Length = 1283 Score = 371 bits (187), Expect = 1e-99 Identities = 289/323 (89%) Strand = Plus / Plus Query: 179 gagcagcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggc 238 |||||||||||||||||||||||||||||| | |||||||| ||||||| ||||||||| Sbjct: 167 gagcagcacggctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggc 226 Query: 239 gaggtcttcggctgccggcattgccacaaccaagctaagaattcgctcgaggtggacgtc 298 ||||| ||||||||| |||||||||||||| | || ||||||||||||||| | | || Sbjct: 227 gaggtgttcggctgcaggcattgccacaacgaggccaagaattcgctcgagatccatctc 286 Query: 299 ctcgaccggcacgacatcccccgccacgaaatcagcaaggtcatctgctctctctgcaac 358 ||||| ||||| ||||||||||||||||||| ||||| ||||||||||||||| || Sbjct: 287 aatgaccgtcacgagatcccccgccacgaaatcaagaaggttatctgctctctctgcgac 346 Query: 359 aaagaacaggatgtgcagaagaactgctccggttgtggggcatgcatggggaaatacttc 418 |||||||||||||| || || |||| || |||||||||||||||||||||||||||||| Sbjct: 347 aaagaacaggatgtacaacagtactgttctggttgtggggcatgcatggggaaatacttc 406 Query: 419 tgtgaaaaatgcaacttctttgacgatgatatctcaaagaaccagtatcactgcgatgga 478 || |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct: 407 tgcgaaaaatgcaacttctttgatgatgatgtctcaaagaaccagtatcactgcgatgga 466 Query: 479 tgcggcatctgcagaactggtgg 501 |||||||| |||||||||||||| Sbjct: 467 tgcggcatatgcagaactggtgg 489
>gb|BT016752.1| Zea mays clone Contig585 mRNA sequence Length = 1421 Score = 190 bits (96), Expect = 3e-45 Identities = 231/276 (83%) Strand = Plus / Plus Query: 223 ggcgccctgctgcggcgaggtcttcggctgccggcattgccacaaccaagctaagaattc 282 |||||||||||||||| ||| |||||||||||| |||||||||||| | || ||||| || Sbjct: 382 ggcgccctgctgcggccaggccttcggctgccgccattgccacaacgacgccaagaactc 441 Query: 283 gctcgaggtggacgtcctcgaccggcacgacatcccccgccacgaaatcagcaaggtcat 342 ||| ||||| ||| | |||||||||||| ||||||||||||||||| | ||||| || Sbjct: 442 gctggaggtcgacccgcgcgaccggcacgagatcccccgccacgaaataaagaaggtgat 501 Query: 343 ctgctctctctgcaacaaagaacaggatgtgcagaagaactgctccggttgtggggcatg 402 ||| ||||||||| |||||||||||| ||||| ||||||||||| | |||||||| || Sbjct: 502 ctgttctctctgctccaaagaacaggacgtgcaacagaactgctccagctgtggggcctg 561 Query: 403 catggggaaatacttctgtgaaaaatgcaacttctttgacgatgatatctcaaagaacca 462 |||||| || ||||||||| || |||||| ||||| || |||||| |||||||| ||| Sbjct: 562 catgggcaagtacttctgtaaagtatgcaagttcttcgatgatgatgtctcaaagggcca 621 Query: 463 gtatcactgcgatggatgcggcatctgcagaactgg 498 ||| ||||| || ||||| || || || |||||||| Sbjct: 622 gtaccactgtgacggatgtggaatatgtagaactgg 657
>ref|XM_476180.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 384 Score = 182 bits (92), Expect = 7e-43 Identities = 107/112 (95%) Strand = Plus / Plus Query: 381 actgctccggttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttg 440 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37 actgctctggttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttg 96 Query: 441 acgatgatatctcaaagaaccagtatcactgcgatggatgcggcatctgcag 492 | |||||| |||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 97 atgatgatgtctcaaagaaccagtatcactgtgatggatgcggcatatgcag 148
>dbj|AK120297.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051O08, full insert sequence Length = 2604 Score = 147 bits (74), Expect = 4e-32 Identities = 143/166 (86%) Strand = Plus / Plus Query: 336 aggtcatctgctctctctgcaacaaagaacaggatgtgcagaagaactgctccggttgtg 395 |||| |||||||||||||||||||||||||||||||| || || | |||||| ||||| Sbjct: 1675 aggttatctgctctctctgcaacaaagaacaggatgtacaacaggattgctccaattgtg 1734 Query: 396 gggcatgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgatatctcaa 455 |||||||| |||| ||||| ||||| | |||||||||||| | ||| || ||| | |||| Sbjct: 1735 gggcatgcttgggtaaatatttctgcgcaaaatgcaacttttatgatgacgatgtatcaa 1794 Query: 456 agaaccagtatcactgcgatggatgcggcatctgcagaactggtgg 501 ||||||| | ||||||||||||||| ||||| |||||||||||||| Sbjct: 1795 agaaccaatttcactgcgatggatgtggcatatgcagaactggtgg 1840 Score = 83.8 bits (42), Expect = 5e-13 Identities = 126/154 (81%) Strand = Plus / Plus Query: 179 gagcagcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggc 238 |||||| |||| |||| |||||||| ||||| |||| |||| ||||||||||||||||| Sbjct: 281 gagcagtacggatgcgtgcattacaggaggaaatgcaagataagggcgccctgctgcggc 340 Query: 239 gaggtcttcggctgccggcattgccacaaccaagctaagaattcgctcgaggtggacgtc 298 ||| |||||| ||| |||| ||||||||| |||| ||| | ||| | ||||| | || Sbjct: 341 gagatcttcgattgcaggcactgccacaacgaagcgaaggactcgttggaggtcagcatc 400 Query: 299 ctcgaccggcacgacatcccccgccacgaaatca 332 |||||||||||| ||||| ||||| ||||||| Sbjct: 401 agcgaccggcacgagatccctcgccatgaaatca 434
>gb|AC137001.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0012L23, complete sequence Length = 121659 Score = 119 bits (60), Expect = 9e-24 Identities = 66/68 (97%) Strand = Plus / Plus Query: 381 actgctccggttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttg 440 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5205 actgctctggttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttg 5264 Query: 441 acgatgat 448 | |||||| Sbjct: 5265 atgatgat 5272 Score = 69.9 bits (35), Expect = 8e-09 Identities = 41/43 (95%) Strand = Plus / Plus Query: 450 tctcaaagaaccagtatcactgcgatggatgcggcatctgcag 492 |||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 5382 tctcaaagaaccagtatcactgtgatggatgcggcatatgcag 5424
>gb|AC108498.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1076_H08, complete sequence Length = 148348 Score = 119 bits (60), Expect = 9e-24 Identities = 66/68 (97%) Strand = Plus / Plus Query: 381 actgctccggttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttg 440 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 100040 actgctctggttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttg 100099 Query: 441 acgatgat 448 | |||||| Sbjct: 100100 atgatgat 100107 Score = 69.9 bits (35), Expect = 8e-09 Identities = 41/43 (95%) Strand = Plus / Plus Query: 450 tctcaaagaaccagtatcactgcgatggatgcggcatctgcag 492 |||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 100217 tctcaaagaaccagtatcactgtgatggatgcggcatatgcag 100259
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 119 bits (60), Expect = 9e-24 Identities = 66/68 (97%) Strand = Plus / Plus Query: 381 actgctccggttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttg 440 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7145191 actgctctggttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttg 7145250 Query: 441 acgatgat 448 | |||||| Sbjct: 7145251 atgatgat 7145258 Score = 69.9 bits (35), Expect = 8e-09 Identities = 41/43 (95%) Strand = Plus / Plus Query: 450 tctcaaagaaccagtatcactgcgatggatgcggcatctgcag 492 |||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 7145368 tctcaaagaaccagtatcactgtgatggatgcggcatatgcag 7145410
>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16, complete sequence Length = 179157 Score = 103 bits (52), Expect = 5e-19 Identities = 73/80 (91%) Strand = Plus / Minus Query: 189 gctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcg 248 |||||||||||||||||||| | |||||||| ||||||| |||||||||||||| |||| Sbjct: 72889 gctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggcgaggtgttcg 72830 Query: 249 gctgccggcattgccacaac 268 ||||| |||||||||||||| Sbjct: 72829 gctgcaggcattgccacaac 72810 Score = 103 bits (52), Expect = 5e-19 Identities = 58/60 (96%) Strand = Plus / Minus Query: 389 ggttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgat 448 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 71512 ggttgtggggcatgcatggggaaatacttctgcgaaaaatgcaacttctttgatgatgat 71453 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 450 tctcaaagaaccagtatcactgcgatggatgcggcatctgcag 492 ||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 71324 tctcaaagaaccagtatcactgcgatggatgcggcatatgcag 71282 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 336 aggtcatctgctctctctgcaacaaagaacaggatgt 372 |||| ||||||||||||||| |||||||||||||||| Sbjct: 71687 aggttatctgctctctctgcgacaaagaacaggatgt 71651 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 302 gaccggcacgacatcccccgccacgaaatca 332 ||||| ||||| ||||||||||||||||||| Sbjct: 72636 gaccgtcacgagatcccccgccacgaaatca 72606
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 103 bits (52), Expect = 5e-19 Identities = 73/80 (91%) Strand = Plus / Minus Query: 189 gctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcg 248 |||||||||||||||||||| | |||||||| ||||||| |||||||||||||| |||| Sbjct: 16194000 gctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggcgaggtgttcg 16193941 Query: 249 gctgccggcattgccacaac 268 ||||| |||||||||||||| Sbjct: 16193940 gctgcaggcattgccacaac 16193921 Score = 103 bits (52), Expect = 5e-19 Identities = 58/60 (96%) Strand = Plus / Minus Query: 389 ggttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgat 448 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 16192623 ggttgtggggcatgcatggggaaatacttctgcgaaaaatgcaacttctttgatgatgat 16192564 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 450 tctcaaagaaccagtatcactgcgatggatgcggcatctgcag 492 ||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 16192435 tctcaaagaaccagtatcactgcgatggatgcggcatatgcag 16192393 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 336 aggtcatctgctctctctgcaacaaagaacaggatgt 372 |||| ||||||||||||||| |||||||||||||||| Sbjct: 16192798 aggttatctgctctctctgcgacaaagaacaggatgt 16192762 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 302 gaccggcacgacatcccccgccacgaaatca 332 ||||| ||||| ||||||||||||||||||| Sbjct: 16193747 gaccgtcacgagatcccccgccacgaaatca 16193717
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 103 bits (52), Expect = 5e-19 Identities = 73/80 (91%) Strand = Plus / Minus Query: 189 gctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcg 248 |||||||||||||||||||| | |||||||| ||||||| |||||||||||||| |||| Sbjct: 16202241 gctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggcgaggtgttcg 16202182 Query: 249 gctgccggcattgccacaac 268 ||||| |||||||||||||| Sbjct: 16202181 gctgcaggcattgccacaac 16202162 Score = 103 bits (52), Expect = 5e-19 Identities = 58/60 (96%) Strand = Plus / Minus Query: 389 ggttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgat 448 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 16200864 ggttgtggggcatgcatggggaaatacttctgcgaaaaatgcaacttctttgatgatgat 16200805 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 450 tctcaaagaaccagtatcactgcgatggatgcggcatctgcag 492 ||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 16200676 tctcaaagaaccagtatcactgcgatggatgcggcatatgcag 16200634 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 336 aggtcatctgctctctctgcaacaaagaacaggatgt 372 |||| ||||||||||||||| |||||||||||||||| Sbjct: 16201039 aggttatctgctctctctgcgacaaagaacaggatgt 16201003 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 302 gaccggcacgacatcccccgccacgaaatca 332 ||||| ||||| ||||||||||||||||||| Sbjct: 16201988 gaccgtcacgagatcccccgccacgaaatca 16201958
>ref|XM_470211.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1050 Score = 93.7 bits (47), Expect = 5e-16 Identities = 83/95 (87%) Strand = Plus / Plus Query: 341 atctgctctctctgcaacaaagaacaggatgtgcagaagaactgctccggttgtggggca 400 |||||||||||||||||||||||||||||||| || || | |||||| |||||||||| Sbjct: 336 atctgctctctctgcaacaaagaacaggatgtacaacaggattgctccaattgtggggca 395 Query: 401 tgcatggggaaatacttctgtgaaaaatgcaactt 435 ||| |||| ||||| ||||| | |||||||||||| Sbjct: 396 tgcttgggtaaatatttctgcgcaaaatgcaactt 430
>gb|BT009109.1| Triticum aestivum clone wl1.pk0003.h12:fis, full insert mRNA sequence Length = 1084 Score = 91.7 bits (46), Expect = 2e-15 Identities = 52/54 (96%) Strand = Plus / Plus Query: 449 atctcaaagaaccagtatcactgcgatggatgcggcatctgcagaactggtggc 502 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 107 atctcaaagaagcagtatcactacgatggatgcggcatctgcagaactggtggc 160
>dbj|AK104287.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-D07, full insert sequence Length = 1252 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 183 agcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgagg 242 ||||||| ||||||||||||| |||||| |||| ||| |||||||||||||||||||| Sbjct: 190 agcacgggtgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgagg 249 Query: 243 tcttcggctgccggcattgccacaac 268 | |||| ||||| |||||||||||| Sbjct: 250 tgttcgcttgccgccattgccacaac 275
>dbj|AK104170.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-F09, full insert sequence Length = 1203 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 183 agcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgagg 242 ||||||| ||||||||||||| |||||| |||| ||| |||||||||||||||||||| Sbjct: 193 agcacgggtgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgagg 252 Query: 243 tcttcggctgccggcattgccacaac 268 | |||| ||||| |||||||||||| Sbjct: 253 tgttcgcttgccgccattgccacaac 278
>dbj|AK069502.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020D18, full insert sequence Length = 1306 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 183 agcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgagg 242 ||||||| ||||||||||||| |||||| |||| ||| |||||||||||||||||||| Sbjct: 212 agcacgggtgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgagg 271 Query: 243 tcttcggctgccggcattgccacaac 268 | |||| ||||| |||||||||||| Sbjct: 272 tgttcgcttgccgccattgccacaac 297
>dbj|AK059316.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-H03, full insert sequence Length = 1334 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 183 agcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgagg 242 ||||||| ||||||||||||| |||||| |||| ||| |||||||||||||||||||| Sbjct: 190 agcacgggtgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgagg 249 Query: 243 tcttcggctgccggcattgccacaac 268 | |||| ||||| |||||||||||| Sbjct: 250 tgttcgcttgccgccattgccacaac 275
>gb|AY105408.1| Zea mays PCO132099 mRNA sequence Length = 795 Score = 83.8 bits (42), Expect = 5e-13 Identities = 111/134 (82%) Strand = Plus / Plus Query: 347 tctctctgcaacaaagaacaggatgtgcagaagaactgctccggttgtggggcatgcatg 406 ||||||||| ||| |||||||| ||||| ||||||||||| | |||||||| |||||| Sbjct: 6 tctctctgctccaaggaacaggacgtgcaacagaactgctccagctgtggggcctgcatg 65 Query: 407 gggaaatacttctgtgaaaaatgcaacttctttgacgatgatatctcaaagaaccagtat 466 || || ||||||||| || |||||| ||||| || |||||| |||||||| |||||| Sbjct: 66 ggcaagtacttctgtaaagtatgcaagttcttcgatgatgatgtctcaaagggccagtac 125 Query: 467 cactgcgatggatg 480 ||||| || ||||| Sbjct: 126 cactgtgacggatg 139
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 191 tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 250 ||||||||||||| |||||| |||| ||| ||||||||||||||||||||| |||| Sbjct: 21490548 tgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgaggtgttcgct 21490607 Query: 251 tgccggcattgccacaac 268 ||||| |||||||||||| Sbjct: 21490608 tgccgccattgccacaac 21490625
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 191 tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 250 ||||||||||||| |||||| |||| ||| ||||||||||||||||||||| |||| Sbjct: 21418869 tgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgaggtgttcgct 21418928 Query: 251 tgccggcattgccacaac 268 ||||| |||||||||||| Sbjct: 21418929 tgccgccattgccacaac 21418946
>emb|AL844497.4|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa0085B23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 158019 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Minus Query: 191 tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 250 ||||||||||||| |||||| |||| ||| ||||||||||||||||||||| |||| Sbjct: 155341 tgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgaggtgttcgct 155282 Query: 251 tgccggcattgccacaac 268 ||||| |||||||||||| Sbjct: 155281 tgccgccattgccacaac 155264
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 69.9 bits (35), Expect = 8e-09 Identities = 71/83 (85%) Strand = Plus / Plus Query: 191 tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 250 |||| |||||||| ||||| |||| |||| |||||||||||||||||||| |||||| Sbjct: 2531063 tgcgtgcattacaggaggaaatgcaagataagggcgccctgctgcggcgagatcttcgat 2531122 Query: 251 tgccggcattgccacaaccaagc 273 ||| |||| ||||||||| |||| Sbjct: 2531123 tgcaggcactgccacaacgaagc 2531145 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 195 agcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggctgcc 254 |||| |||| ||||||||||||||| |||||||| |||||| ||| |||||| ||||| Sbjct: 13072459 agcactacaggaggaggtgcaggatccgggcgccgtgctgcaacgacgtcttccactgcc 13072400 Query: 255 ggcattgccacaac 268 | |||||||||||| Sbjct: 13072399 gccattgccacaac 13072386 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 336 aggtcatctgctctctctgcaacaaagaacaggatgt 372 |||| |||||||||||||||||||||||||||||||| Sbjct: 2532540 aggttatctgctctctctgcaacaaagaacaggatgt 2532576 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 452 tcaaagaaccagtatcactgcgatggatgcggcatctgcag 492 ||||||||||| | ||||||||||||||| ||||| ||||| Sbjct: 2532908 tcaaagaaccaatttcactgcgatggatgtggcatatgcag 2532948 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 391 ttgtggggcatgcatggggaaatacttctgtgaaaaatgcaactt 435 ||||||||||||| |||| ||||| ||||| | |||||||||||| Sbjct: 2532723 ttgtggggcatgcttgggtaaatatttctgcgcaaaatgcaactt 2532767 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 301 cgaccggcacgacatcccccgccacgaaatca 332 |||||||||||| ||||| ||||| ||||||| Sbjct: 2531267 cgaccggcacgagatccctcgccatgaaatca 2531298
>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0067N01, from chromosome 3, complete sequence Length = 159636 Score = 69.9 bits (35), Expect = 8e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 191 tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 250 |||| |||||||| ||||| |||| |||| |||||||||||||||||||| |||||| Sbjct: 139031 tgcgtgcattacaggaggaaatgcaagataagggcgccctgctgcggcgagatcttcgat 138972 Query: 251 tgccggcattgccacaaccaagc 273 ||| |||| ||||||||| |||| Sbjct: 138971 tgcaggcactgccacaacgaagc 138949 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 336 aggtcatctgctctctctgcaacaaagaacaggatgt 372 |||| |||||||||||||||||||||||||||||||| Sbjct: 137554 aggttatctgctctctctgcaacaaagaacaggatgt 137518 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Minus Query: 391 ttgtggggcatgcatggggaaatacttctgtgaaaaatgcaactt 435 ||||||||||||| |||| ||||| ||||| | |||||||||||| Sbjct: 137371 ttgtggggcatgcttgggtaaatatttctgcgcaaaatgcaactt 137327 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Minus Query: 452 tcaaagaaccagtatcactgcgatggatgcggcatctgcag 492 ||||||||||| | ||||||||||||||| ||||| ||||| Sbjct: 137186 tcaaagaaccaatttcactgcgatggatgtggcatatgcag 137146 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 301 cgaccggcacgacatcccccgccacgaaatca 332 |||||||||||| ||||| ||||| ||||||| Sbjct: 138827 cgaccggcacgagatccctcgccatgaaatca 138796
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 69.9 bits (35), Expect = 8e-09 Identities = 71/83 (85%) Strand = Plus / Plus Query: 191 tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 250 |||| |||||||| ||||| |||| |||| |||||||||||||||||||| |||||| Sbjct: 2531173 tgcgtgcattacaggaggaaatgcaagataagggcgccctgctgcggcgagatcttcgat 2531232 Query: 251 tgccggcattgccacaaccaagc 273 ||| |||| ||||||||| |||| Sbjct: 2531233 tgcaggcactgccacaacgaagc 2531255 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 195 agcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggctgcc 254 |||| |||| ||||||||||||||| |||||||| |||||| ||| |||||| ||||| Sbjct: 13069234 agcactacaggaggaggtgcaggatccgggcgccgtgctgcaacgacgtcttccactgcc 13069175 Query: 255 ggcattgccacaac 268 | |||||||||||| Sbjct: 13069174 gccattgccacaac 13069161 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 336 aggtcatctgctctctctgcaacaaagaacaggatgt 372 |||| |||||||||||||||||||||||||||||||| Sbjct: 2532650 aggttatctgctctctctgcaacaaagaacaggatgt 2532686 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 452 tcaaagaaccagtatcactgcgatggatgcggcatctgcag 492 ||||||||||| | ||||||||||||||| ||||| ||||| Sbjct: 2533018 tcaaagaaccaatttcactgcgatggatgtggcatatgcag 2533058 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 391 ttgtggggcatgcatggggaaatacttctgtgaaaaatgcaactt 435 ||||||||||||| |||| ||||| ||||| | |||||||||||| Sbjct: 2532833 ttgtggggcatgcttgggtaaatatttctgcgcaaaatgcaactt 2532877 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 301 cgaccggcacgacatcccccgccacgaaatca 332 |||||||||||| ||||| ||||| ||||||| Sbjct: 2531377 cgaccggcacgagatccctcgccatgaaatca 2531408
>gb|AC119796.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1172F09, complete sequence Length = 106057 Score = 69.9 bits (35), Expect = 8e-09 Identities = 71/83 (85%) Strand = Plus / Plus Query: 191 tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 250 |||| |||||||| ||||| |||| |||| |||||||||||||||||||| |||||| Sbjct: 103559 tgcgtgcattacaggaggaaatgcaagataagggcgccctgctgcggcgagatcttcgat 103618 Query: 251 tgccggcattgccacaaccaagc 273 ||| |||| ||||||||| |||| Sbjct: 103619 tgcaggcactgccacaacgaagc 103641 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 336 aggtcatctgctctctctgcaacaaagaacaggatgt 372 |||| |||||||||||||||||||||||||||||||| Sbjct: 105036 aggttatctgctctctctgcaacaaagaacaggatgt 105072 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 452 tcaaagaaccagtatcactgcgatggatgcggcatctgcag 492 ||||||||||| | ||||||||||||||| ||||| ||||| Sbjct: 105404 tcaaagaaccaatttcactgcgatggatgtggcatatgcag 105444 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 391 ttgtggggcatgcatggggaaatacttctgtgaaaaatgcaactt 435 ||||||||||||| |||| ||||| ||||| | |||||||||||| Sbjct: 105219 ttgtggggcatgcttgggtaaatatttctgcgcaaaatgcaactt 105263 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 301 cgaccggcacgacatcccccgccacgaaatca 332 |||||||||||| ||||| ||||| ||||||| Sbjct: 103763 cgaccggcacgagatccctcgccatgaaatca 103794
>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0006D11, complete sequence Length = 176637 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 195 agcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggctgcc 254 |||| |||| ||||||||||||||| |||||||| |||||| ||| |||||| ||||| Sbjct: 150157 agcactacaggaggaggtgcaggatccgggcgccgtgctgcaacgacgtcttccactgcc 150098 Query: 255 ggcattgccacaac 268 | |||||||||||| Sbjct: 150097 gccattgccacaac 150084
>dbj|AK059950.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-B01, full insert sequence Length = 1059 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 195 agcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggctgcc 254 |||| |||| ||||||||||||||| |||||||| |||||| ||| |||||| ||||| Sbjct: 101 agcactacaggaggaggtgcaggatccgggcgccgtgctgcaacgacgtcttccactgcc 160 Query: 255 ggcattgccacaac 268 | |||||||||||| Sbjct: 161 gccattgccacaac 174
>gb|AY365035.1| Zea mays pollen germination-related protein-like mRNA sequence Length = 1106 Score = 63.9 bits (32), Expect = 5e-07 Identities = 32/32 (100%) Strand = Plus / Plus Query: 341 atctgctctctctgcaacaaagaacaggatgt 372 |||||||||||||||||||||||||||||||| Sbjct: 13 atctgctctctctgcaacaaagaacaggatgt 44 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 455 aagaaccagtatcactgcgatggatgcggcatctgcagaactggtggc 502 |||||||| | |||||||||||| |||||||| ||||| ||||||||| Sbjct: 280 aagaaccaatttcactgcgatgggtgcggcatatgcaggactggtggc 327 Score = 40.1 bits (20), Expect = 6.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 410 aaatacttctgtgaaaaatgcaacttctttgacgatgata 449 ||||||||||| | |||||||||||||| ||||| |||| Sbjct: 179 aaatacttctgcgcgaaatgcaacttcttcgacgacgata 218
>dbj|AK073680.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033054M17, full insert sequence Length = 1232 Score = 60.0 bits (30), Expect = 7e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 195 agcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggctgcc 254 |||| |||| ||||||||||| ||| |||||||| |||||| ||| |||||| ||||| Sbjct: 154 agcactacaggaggaggtgcacgatccgggcgccgtgctgcaacgacgtcttccactgcc 213 Query: 255 ggcattgccacaac 268 | |||||||||||| Sbjct: 214 gccattgccacaac 227
>gb|BC087404.1| Xenopus laevis hypothetical LOC496013, mRNA (cDNA clone MGC:99190 IMAGE:7207617), complete cds Length = 1181 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 455 aagaaccagtatcactgcgatggatgcggcatctgcag 492 ||||| ||||||||||| |||||||||||||| ||||| Sbjct: 473 aagaagcagtatcactgtgatggatgcggcatatgcag 510
>ref|NM_191787.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 900 Score = 50.1 bits (25), Expect = 0.007 Identities = 91/113 (80%) Strand = Plus / Plus Query: 390 gttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgata 449 ||||||| | |||||||||||| |||||||||||| ||||| ||||||| |||||| Sbjct: 371 gttgtggtgtatgcatggggaagtacttctgtgaagtgtgcaagctctttgatgatgatg 430 Query: 450 tctcaaagaaccagtatcactgcgatggatgcggcatctgcagaactggtggc 502 | ||||| | || ||||| ||| |||| || || || ||||||| ||||||| Sbjct: 431 tttcaaaacagcaatatcattgcaatggttgtggaatatgcagaattggtggc 483
>gb|AY574990.1| Oryza sativa (japonica cultivar-group) zinc finger protein (Tranpr) mRNA, complete cds Length = 1393 Score = 50.1 bits (25), Expect = 0.007 Identities = 91/113 (80%) Strand = Plus / Plus Query: 390 gttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgata 449 ||||||| | |||||||||||| |||||||||||| ||||| ||||||| |||||| Sbjct: 427 gttgtggtgtatgcatggggaagtacttctgtgaagtgtgcaagctctttgatgatgatg 486 Query: 450 tctcaaagaaccagtatcactgcgatggatgcggcatctgcagaactggtggc 502 | ||||| | || ||||| ||| |||| || || || ||||||| ||||||| Sbjct: 487 tttcaaaacagcaatatcattgcaatggttgtggaatatgcagaattggtggc 539
>dbj|AK070809.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023072L02, full insert sequence Length = 2362 Score = 50.1 bits (25), Expect = 0.007 Identities = 91/113 (80%) Strand = Plus / Plus Query: 390 gttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgata 449 ||||||| | |||||||||||| |||||||||||| ||||| ||||||| |||||| Sbjct: 2241 gttgtggtgtatgcatggggaagtacttctgtgaagtgtgcaagctctttgatgatgatg 2300 Query: 450 tctcaaagaaccagtatcactgcgatggatgcggcatctgcagaactggtggc 502 | ||||| | || ||||| ||| |||| || || || ||||||| ||||||| Sbjct: 2301 tttcaaaacagcaatatcattgcaatggttgtggaatatgcagaattggtggc 2353
>dbj|AK068005.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130E06, full insert sequence Length = 1843 Score = 50.1 bits (25), Expect = 0.007 Identities = 91/113 (80%) Strand = Plus / Plus Query: 390 gttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgata 449 ||||||| | |||||||||||| |||||||||||| ||||| ||||||| |||||| Sbjct: 734 gttgtggtgtatgcatggggaagtacttctgtgaagtgtgcaagctctttgatgatgatg 793 Query: 450 tctcaaagaaccagtatcactgcgatggatgcggcatctgcagaactggtggc 502 | ||||| | || ||||| ||| |||| || || || ||||||| ||||||| Sbjct: 794 tttcaaaacagcaatatcattgcaatggttgtggaatatgcagaattggtggc 846
>dbj|AK062155.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-H12, full insert sequence Length = 1692 Score = 50.1 bits (25), Expect = 0.007 Identities = 91/113 (80%) Strand = Plus / Plus Query: 390 gttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttgacgatgata 449 ||||||| | |||||||||||| |||||||||||| ||||| ||||||| |||||| Sbjct: 617 gttgtggtgtatgcatggggaagtacttctgtgaagtgtgcaagctctttgatgatgatg 676 Query: 450 tctcaaagaaccagtatcactgcgatggatgcggcatctgcagaactggtggc 502 | ||||| | || ||||| ||| |||| || || || ||||||| ||||||| Sbjct: 677 tttcaaaacagcaatatcattgcaatggttgtggaatatgcagaattggtggc 729
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 390 gttgtggggcatgcatggggaaatacttctgtgaa 424 ||||||| | |||||||||||| |||||||||||| Sbjct: 29960765 gttgtggtgtatgcatggggaagtacttctgtgaa 29960731
>dbj|AP003453.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0480C01 Length = 151100 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 390 gttgtggggcatgcatggggaaatacttctgtgaa 424 ||||||| | |||||||||||| |||||||||||| Sbjct: 105323 gttgtggtgtatgcatggggaagtacttctgtgaa 105289
>emb|AL357315.14| Human DNA sequence from clone RP11-809N15 on chromosome 6 Contains a putative novel gene and a novel gene. Contains a CpG island, complete sequence Length = 121129 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 410 aaatacttctgtgaaaaatgca 431 |||||||||||||||||||||| Sbjct: 8042 aaatacttctgtgaaaaatgca 8063
>ref|XM_320050.2| Anopheles gambiae str. PEST ENSANGP00000012255 (ENSANGG00000009766), partial mRNA Length = 759 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Plus Query: 461 cagtatcactgcgatggatgcggcatctgc 490 ||||||||||| ||||| |||||||||||| Sbjct: 250 cagtatcactgtgatgggtgcggcatctgc 279
>gb|AY104238.1| Zea mays PCO120536 mRNA sequence Length = 1630 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 401 tgcatggggaaatacttctgtg 422 |||||||||||||||||||||| Sbjct: 1584 tgcatggggaaatacttctgtg 1605
>gb|AC134569.4| Mus musculus BAC clone RP24-240H21 from chromosome 16, complete sequence Length = 168794 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 88 acccccgcctccttcctctct 108 ||||||||||||||||||||| Sbjct: 110450 acccccgcctccttcctctct 110430
>gb|AC123064.3| Mus musculus BAC clone RP23-220P13 from chromosome 10, complete sequence Length = 186172 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 atgcaacttctttgacgatg 446 |||||||||||||||||||| Sbjct: 36571 atgcaacttctttgacgatg 36590
>gb|AC122847.4| Mus musculus BAC clone RP23-163F2 from 6, complete sequence Length = 193343 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 337 ggtcatctgctctctctgcaacaa 360 |||||| ||||||||||||||||| Sbjct: 87761 ggtcatatgctctctctgcaacaa 87738
>ref|XM_541048.2| PREDICTED: Canis familiaris similar to Galanin receptor type 1 (GAL1-R) (GALR1) (LOC483928), mRNA Length = 1056 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 gacccccgcctccttcctct 106 |||||||||||||||||||| Sbjct: 837 gacccccgcctccttcctct 856
>gb|AC152414.7| Mus musculus BAC clone RP23-358O14 from chromosome 10, complete sequence Length = 230322 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 atgcaacttctttgacgatg 446 |||||||||||||||||||| Sbjct: 170655 atgcaacttctttgacgatg 170674
>gb|AC157351.11| Mus musculus chromosome 5, clone RP23-219K16, complete sequence Length = 196331 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 acccccgcctccttcctctcttcc 111 ||||||||||||||||| |||||| Sbjct: 122125 acccccgcctccttcctttcttcc 122102
>gb|AC113187.6| Homo sapiens chromosome 15, clone RP11-924B20, complete sequence Length = 205998 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ggcacagcctcccattcttt 20 |||||||||||||||||||| Sbjct: 50707 ggcacagcctcccattcttt 50726
>gb|AC022710.10|AC022710 Homo sapiens chromosome 15, clone RP11-90E5, complete sequence Length = 186517 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ggcacagcctcccattcttt 20 |||||||||||||||||||| Sbjct: 134662 ggcacagcctcccattcttt 134681
>gb|DQ217943.1| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif 17 (ADAMTS17) gene, complete cds; and 5S ribosomal RNA gene, complete sequence Length = 371157 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ggcacagcctcccattcttt 20 |||||||||||||||||||| Sbjct: 179380 ggcacagcctcccattcttt 179361 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,728,485 Number of Sequences: 3902068 Number of extensions: 3728485 Number of successful extensions: 104670 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104278 Number of HSP's gapped (non-prelim): 392 length of query: 502 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 480 effective length of database: 17,147,199,772 effective search space: 8230655890560 effective search space used: 8230655890560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
