ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2b15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475272.1| Oryza sativa (japonica cultivar-group), predic... 129 3e-27
2dbj|AK063573.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 3e-27
3gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome... 96 4e-17
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 96 4e-17
5gb|AY386265.1| Bovine papular stomatitis virus strain BV-AR02, c... 40 1.8
6gb|AY183428.1| Sus scrofa fatty acid synthase (FASN) mRNA, parti... 40 1.8
7gb|AF296508.1|AF296508 Sus scrofa fatty acid synthase (FASN) mRN... 40 1.8
8gb|AY954688.1| Sus scrofa fatty acid synthase (FASN) mRNA, parti... 40 1.8
9gb|AY186921.1| Desulfuromonas acetexigens strain 2873 RNA polyme... 38 7.2
10gb|AY186913.1| Desulfuromonas michiganensis strain BB1 rpoB pseu... 38 7.2
11gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 38 7.2
12gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome 38 7.2
13gb|AC008274.4| Homo sapiens BAC clone RP11-247H16 from 2, comple... 38 7.2
14gb|AC141366.2| Homo sapiens fosmid clone XXFOS-87310E7 from 2, c... 38 7.2 
>ref|XM_475272.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1116

 Score =  129 bits (65), Expect = 3e-27
 Identities = 116/133 (87%)
 Strand = Plus / Plus

                                                                       
Query: 17  attcccttggccaccacccatcctaagatggattcctggctaggcaaccggagaaggatc 76
           ||||||||||| |||| |||||||||||||||| ||||||||||||| |||| |||||||
Sbjct: 379 attcccttggcaaccagccatcctaagatggatgcctggctaggcaatcggaaaaggatc 438

                                                                       
Query: 77  atagtgatgaaccgcgaggacatggtgtcggccgacgacagaaatgcatgggcgacttac 136
           ||||| ||||| ||||| |||||||||||    || |||||||||||||||||  |||||
Sbjct: 439 atagtcatgaatcgcgaagacatggtgtcaaatgaggacagaaatgcatgggcctcttac 498

                        
Query: 137 ttttctagtcagg 149
           ||| ||| |||||
Sbjct: 499 tttgctaatcagg 511
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>dbj|AK063573.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-G09, full
           insert sequence
          Length = 1420

 Score =  129 bits (65), Expect = 3e-27
 Identities = 116/133 (87%)
 Strand = Plus / Plus

                                                                       
Query: 17  attcccttggccaccacccatcctaagatggattcctggctaggcaaccggagaaggatc 76
           ||||||||||| |||| |||||||||||||||| ||||||||||||| |||| |||||||
Sbjct: 393 attcccttggcaaccagccatcctaagatggatgcctggctaggcaatcggaaaaggatc 452

                                                                       
Query: 77  atagtgatgaaccgcgaggacatggtgtcggccgacgacagaaatgcatgggcgacttac 136
           ||||| ||||| ||||| |||||||||||    || |||||||||||||||||  |||||
Sbjct: 453 atagtcatgaatcgcgaagacatggtgtcaaatgaggacagaaatgcatgggcctcttac 512

                        
Query: 137 ttttctagtcagg 149
           ||| ||| |||||
Sbjct: 513 tttgctaatcagg 525
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>gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0048I21,
              complete sequence
          Length = 137650

 Score = 95.6 bits (48), Expect = 4e-17
 Identities = 93/108 (86%)
 Strand = Plus / Minus

                                                                          
Query: 42     agatggattcctggctaggcaaccggagaaggatcatagtgatgaaccgcgaggacatgg 101
              |||||||| ||||||||||||| |||| |||||||||||| ||||| ||||| |||||||
Sbjct: 111257 agatggatgcctggctaggcaatcggaaaaggatcatagtcatgaatcgcgaagacatgg 111198

                                                              
Query: 102    tgtcggccgacgacagaaatgcatgggcgacttacttttctagtcagg 149
              ||||    || |||||||||||||||||  |||||||| ||| |||||
Sbjct: 111197 tgtcaaatgaggacagaaatgcatgggcctcttactttgctaatcagg 111150



 Score = 38.2 bits (19), Expect = 7.2
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 17     attcccttggccaccacccatcctaag 43
              ||||||||||| |||| ||||||||||
Sbjct: 111360 attcccttggcaaccagccatcctaag 111334
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 95.6 bits (48), Expect = 4e-17
 Identities = 93/108 (86%)
 Strand = Plus / Minus

                                                                            
Query: 42       agatggattcctggctaggcaaccggagaaggatcatagtgatgaaccgcgaggacatgg 101
                |||||||| ||||||||||||| |||| |||||||||||| ||||| ||||| |||||||
Sbjct: 20984479 agatggatgcctggctaggcaatcggaaaaggatcatagtcatgaatcgcgaagacatgg 20984420

                                                                
Query: 102      tgtcggccgacgacagaaatgcatgggcgacttacttttctagtcagg 149
                ||||    || |||||||||||||||||  |||||||| ||| |||||
Sbjct: 20984419 tgtcaaatgaggacagaaatgcatgggcctcttactttgctaatcagg 20984372



 Score = 38.2 bits (19), Expect = 7.2
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                           
Query: 17       attcccttggccaccacccatcctaag 43
                ||||||||||| |||| ||||||||||
Sbjct: 20984582 attcccttggcaaccagccatcctaag 20984556
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>gb|AY386265.1| Bovine papular stomatitis virus strain BV-AR02, complete genome
          Length = 134431

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 81    tgatgaaccgcgaggacatggtgtcggc 108
             |||| ||||||||||||||||| |||||
Sbjct: 83507 tgataaaccgcgaggacatggtttcggc 83480
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>gb|AY183428.1| Sus scrofa fatty acid synthase (FASN) mRNA, partial cds
          Length = 807

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 94  ggacatggtgtcggccgacgacag 117
           |||||||||| |||||||||||||
Sbjct: 16  ggacatggtgacggccgacgacag 39
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>gb|AF296508.1|AF296508 Sus scrofa fatty acid synthase (FASN) mRNA, partial cds
          Length = 147

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 94  ggacatggtgtcggccgacgacag 117
           |||||||||| |||||||||||||
Sbjct: 27  ggacatggtgacggccgacgacag 50
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>gb|AY954688.1| Sus scrofa fatty acid synthase (FASN) mRNA, partial cds
          Length = 7235

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 94  ggacatggtgtcggccgacgacag 117
           |||||||||| |||||||||||||
Sbjct: 16  ggacatggtgacggccgacgacag 39
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>gb|AY186921.1| Desulfuromonas acetexigens strain 2873 RNA polymerase beta subunit
           (rpoB) gene, partial cds
          Length = 626

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 81  tgatgaaccgcgaggacat 99
           |||||||||||||||||||
Sbjct: 503 tgatgaaccgcgaggacat 521
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>gb|AY186913.1| Desulfuromonas michiganensis strain BB1 rpoB pseudogene, partial
           sequence
          Length = 631

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 81  tgatgaaccgcgaggacat 99
           |||||||||||||||||||
Sbjct: 503 tgatgaaccgcgaggacat 521
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 104    tcggccgacgacagaaatg 122
              |||||||||||||||||||
Sbjct: 915277 tcggccgacgacagaaatg 915295
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>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 62      aaccggagaaggatcatag 80
               |||||||||||||||||||
Sbjct: 2904780 aaccggagaaggatcatag 2904798
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>gb|AC008274.4| Homo sapiens BAC clone RP11-247H16 from 2, complete sequence
          Length = 89271

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 44    atggattcctggctaggca 62
             |||||||||||||||||||
Sbjct: 57584 atggattcctggctaggca 57566
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>gb|AC141366.2| Homo sapiens fosmid clone XXFOS-87310E7 from 2, complete sequence
          Length = 22886

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 19    tcccttggccaccacccat 37
             |||||||||||||||||||
Sbjct: 17553 tcccttggccaccacccat 17571


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 898,131
Number of Sequences: 3902068
Number of extensions: 898131
Number of successful extensions: 59321
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59259
Number of HSP's gapped (non-prelim): 58
length of query: 149
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 128
effective length of database: 17,151,101,840
effective search space: 2195341035520
effective search space used: 2195341035520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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