>YAC9_MAIZE (P03936) Transposable element activator hypothetical 23 kDa protein|
           (AC 23 kDa protein)
          Length = 210

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 32/77 (41%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
 Frame = +1

Query: 274 RSGRGGVPAVPENRADRHVRGRPSLAMGAPLQPRHGRHQLW--ERRSGASLGRKPAGRRA 447
           RSGR G P      A   V G P +A  A   PRHGRH++W   + SG   GR+    RA
Sbjct: 66  RSGRMGGPRRDGRVASSGVEGGPWMAASASGVPRHGRHRVWCLVQPSGRPAGRQGESERA 125

Query: 448 --SLTRMSQGCRIADVG 492
             S TR+  G R+A  G
Sbjct: 126 GESETRVGVGVRLAASG 142

>CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21|
          Length = 348

 Score = 37.0 bits (84), Expect = 0.051
 Identities = 40/149 (26%), Positives = 60/149 (40%), Gaps = 20/149 (13%)
 Frame = -1

Query: 654 PPRRWQPTATPETTESDGDAGIQRRHRKPPEAGDNGWQGSGAVVIPDRSPR--------- 502
           PP R   T +  T+ S   +  ++R R    + D+  + S +   P RSP          
Sbjct: 195 PPARCSSTHSQSTSSSSPSSPPRKRARSRSASQDSSARSSSSHASP-RSPTPRTTSHVAS 253

Query: 501 ------RRRSYISDATPLAHPRQ*STTS-SRLATKGGPGSALPQLMAAMTRL*GRPHGER 343
                 R RS     +PL+H R   + S SR  ++    S L    ++ +R   R     
Sbjct: 254 YSSYSSRSRSRSRSRSPLSHSRSSRSRSRSRSRSRSRSRSPLSHSRSSRSRSPSRSRSPS 313

Query: 342 GSSAYMAISPVFRYRRHSSS----PTPNP 268
             ++  + SP  R RRHSSS    P P P
Sbjct: 314 RCASSRSRSPAHRPRRHSSSRVNPPGPPP 342

>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22|
          Length = 1010

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 35/119 (29%), Positives = 48/119 (40%), Gaps = 1/119 (0%)
 Frame = -1

Query: 633 TATPETTESDGDAGIQRRHRKPPEAGDNGWQGSGAVVIPDRSPRRRRSYISDATPLAHPR 454
           T +P   + DG      R   PP    + ++  G    P  SPRR RS      P +HPR
Sbjct: 24  TQSPSPRDEDGSRSPGERTPSPPSRDPSPYRSPGERT-PSPSPRRDRSLSPRDQPHSHPR 82

Query: 453 Q*S-TTSSRLATKGGPGSALPQLMAAMTRL*GRPHGERGSSAYMAISPVFRYRRHSSSP 280
             S T  S+  ++    S  P+  +   R+      +R SS      P    RRHS SP
Sbjct: 83  SRSPTPRSQSPSRRSVRSPSPRQGSPARRV------DRSSSPRARSPPP---RRHSRSP 132

>CABL1_MOUSE (Q9ESJ1) CDK5 and ABL1 enzyme substrate 1 (Interactor with CDK3 1)|
           (Ik3-1)
          Length = 568

 Score = 33.5 bits (75), Expect = 0.57
 Identities = 37/135 (27%), Positives = 49/135 (36%), Gaps = 8/135 (5%)
 Frame = -1

Query: 654 PPRRWQPTATPETTESDGDAGIQRRHRKPPEAGDN------GWQGSGAVVIPDRSPRRRR 493
           PPR        +    DG  G  +   +  +A  N       + GSG       S  R  
Sbjct: 143 PPRSAPAVTGAQLQLPDGPGGAGQEELEEDDAFTNVQVPSASFLGSGTPGSTSGSRGRLN 202

Query: 492 SYISDATPLAHPRQ*STTSSRL--ATKGGPGSALPQLMAAMTRL*GRPHGERGSSAYMAI 319
           S+     P+A  RQ S     L  + +GG  SAL QL  A  RL  +             
Sbjct: 203 SFTQGILPIAFSRQNSQNYCALEQSGQGGSTSALEQLQRARRRLISQRSSLETLEDIEEN 262

Query: 318 SPVFRYRRHSSSPTP 274
           +P+ R R  S SP P
Sbjct: 263 APLRRCRTLSGSPRP 277

>CUT_DROME (P10180) Homeobox protein cut|
          Length = 2175

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 21/64 (32%), Positives = 26/64 (40%)
 Frame = +1

Query: 226 QQHHPCTKHHHL*RWIRSGRGGVPAVPENRADRHVRGRPSLAMGAPLQPRHGRHQLWERR 405
           QQH     HHHL +   SG    PA  ++    H+ G   L    P    H  HQ  E  
Sbjct: 685 QQHLHQQHHHHLQQQPNSGSNSNPASNDHHHGHHLHGHGLL---HPSSAHHLHHQTTESN 741

Query: 406 SGAS 417
           S +S
Sbjct: 742 SNSS 745

>CT174_HUMAN (Q5JPB2) Protein C20orf174|
          Length = 1082

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = -1

Query: 498  RRSYISDATPLAHPRQ*STTSSRLATKGGPGSALPQLMAAMTRL*GRP-HGERGSSAYMA 322
            R  +I+     A PR  S T+ R  T   P S + +   A T L GRP  G+R S +   
Sbjct: 905  RTDHIAQEIHSAEPRDHSQTAGRTLTSSSPDSKVTEEGRAQTLLPGRPSSGQRISDSVPL 964

Query: 321  ISPVFRYRRHSSSPTPNPSS 262
             S     + H   P   PSS
Sbjct: 965  ES---TEKTHLEIPASGPSS 981

>PILF_NEIGO (P37094) Type IV pilus assembly protein pilF|
          Length = 558

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 21/71 (29%), Positives = 29/71 (40%)
 Frame = -1

Query: 357 PHGERGSSAYMAISPVFRYRRHSSSPTPNPSSQMMMFGAGMVLLAFNTTDEQRLGLLDYL 178
           P   RG   + A+S           PT  P  Q  +  AG+ +      D+Q  GLLD++
Sbjct: 88  PVFRRGDKVFFAVS----------DPTQMPQIQKTVSAAGIAVELVIVEDDQLAGLLDWV 137

Query: 177 NGSPTKLLPVL 145
               T LL  L
Sbjct: 138 GSRSTSLLQEL 148

>KCNC3_HUMAN (Q14003) Potassium voltage-gated channel subfamily C member 3|
           (Voltage-gated potassium channel subunit Kv3.3)
           (KSHIIID)
          Length = 757

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 16/71 (22%)
 Frame = -3

Query: 508 PTSTTLLHQRC---DTPGSSSSMKHDVQPACD--QGRPRIC------APTADGGHDEAVG 362
           P +  L H+ C   D P  S   K  + P       R R C      AP+ DG   +A G
Sbjct: 667 PAAAALAHEDCPAIDQPAMSPEDKSPITPGSRGRYSRDRACFLLTDYAPSPDGSIRKATG 726

Query: 361 APP-----WRE 344
           APP     WR+
Sbjct: 727 APPLPPQDWRK 737

>AREA_GIBFU (P78688) Nitrogen regulatory protein areA|
          Length = 971

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 529 GSDSRSKPTSTTLLHQRCDTPGSSSSMKHDVQPACDQGRPRICAPTA 389
           GS +RSK T++TL  ++  T   S++  +  +P      PR+  P A
Sbjct: 753 GSSTRSKKTASTLNSRKNSTLSMSTATANSTKPNSSNPTPRVTTPPA 799

>CAC1H_HUMAN (O95180) Voltage-dependent T-type calcium channel alpha-1H subunit|
           (Voltage-gated calcium channel alpha subunit Cav3.2)
           (Low-voltage-activated calcium channel alpha1 3.2
           subunit)
          Length = 2353

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -1

Query: 645 RWQPTATPETTES--DGDAGIQRRHRKPPEAGDNGWQG 538
           RW PT  P  T++   G    QRR ++    G+ GW G
Sbjct: 739 RWDPTRPPRATDTPGPGPGSPQRRAQQRAAPGEPGWMG 776

>SIRT1_MOUSE (Q923E4) NAD-dependent deacetylase sirtuin-1 (EC 3.5.1.-)|
           (SIR2alpha) (mSIR2a) (Sir2) (SIR2-like protein 1)
          Length = 737

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +1

Query: 334 GRPSLA--MGAPLQPRHGRHQLWERRSGASLGRKPAGRRASLTRMSQGCRIADVGASSTW 507
           G PS A  M A  QP     +   RR G  LGR P    A++   + GC  A   A    
Sbjct: 13  GSPSAAAAMEAASQPADEPLRKRPRRDGPGLGRSPGEPSAAVAPAAAGCEAASAAAP--- 69

Query: 508 ASIW 519
           A++W
Sbjct: 70  AALW 73

>ZN577_HUMAN (Q9BSK1) Zinc finger protein 577|
          Length = 478

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 505 TSTTLLHQRCDTPGSSSSMKHDVQPACDQGRPRICA 398
           T T + + RC  P S  S  +D+Q  C  G+P  C+
Sbjct: 119 TLTGVKYHRCVKPSSPKSQLNDLQKICAGGKPHECS 154

>RAD52_YEAST (P06778) DNA repair and recombination protein RAD52|
          Length = 504

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 277 SGRGGVPAVPENRADRHVRGRPSLAMGAPLQPRHGR 384
           +G G VPAVP+ R+ R   GRP       + P H R
Sbjct: 472 NGNGAVPAVPQQRSTRREVGRPK------INPLHAR 501

>SPEG_HUMAN (Q15772) Striated muscle preferentially expressed protein kinase (EC|
            2.7.11.1) (Aortic preferentially expressed protein 1)
            (APEG-1)
          Length = 3223

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 21/60 (35%), Positives = 25/60 (41%)
 Frame = -1

Query: 630  ATPETTESDGDAGIQRRHRKPPEAGDNGWQGSGAVVIPDRSPRRRRSYISDATPLAHPRQ 451
            ATP   +  G A  Q +    PEA  +  Q   A   P R   RR S    A P A PR+
Sbjct: 1968 ATPMDWQEQGRAPSQDQEAPSPEALPSPGQEPAAGASPRRGELRRGSSAESALPRAGPRE 2027

>KCNC3_RAT (Q01956) Potassium voltage-gated channel subfamily C member 3|
           (Voltage-gated potassium channel subunit Kv3.3)
           (KSHIIID)
          Length = 889

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 11/63 (17%)
 Frame = -3

Query: 508 PTSTTLLHQRC---DTPGSSSSMKHDVQPACD--QGRPRIC------APTADGGHDEAVG 362
           P +  L H+ C   D P  S   K  + P       R R C      AP+ DG   +A G
Sbjct: 678 PAAAALAHEDCPAIDQPAMSPEDKSPITPGSRGRYSRDRACFLVTDYAPSPDGSIRKATG 737

Query: 361 APP 353
           APP
Sbjct: 738 APP 740

>MATRX_MEASA (P35976) Matrix protein|
          Length = 335

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +2

Query: 245 PNIIICEDGLGVGEEECLRYLKTGLIAMYAEDPLS-PWGRPYSLVMAAISCGSADPGPPL 421
           P + + + GLG  ++EC  Y+   L  +   DPL  P GR +  +   +   +A P   L
Sbjct: 33  PQVRVIDPGLGDRKDECFMYMSL-LGVVEDSDPLGPPIGRAFGSLPLGVGRSTAKPEKLL 91

Query: 422 -VASRLDVVL 448
             A+ LD+V+
Sbjct: 92  KEATELDIVV 101

>TOM70_MOUSE (Q9CZW5) Mitochondrial precursor proteins import receptor|
           (Translocase of outer membrane TOM70)
          Length = 611

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 22/63 (34%), Positives = 29/63 (46%)
 Frame = +1

Query: 280 GRGGVPAVPENRADRHVRGRPSLAMGAPLQPRHGRHQLWERRSGASLGRKPAGRRASLTR 459
           G GG  A P + A    R   +LA+GAPL    G   LW RR      R+ AG R   + 
Sbjct: 24  GGGGGTAGPGSGAGTLPRWHVALAIGAPLLLGAGAMYLWSRRR----RRREAGGRGDASG 79

Query: 460 MSQ 468
           + +
Sbjct: 80  LKR 82

>CHCB2_ANTPO (P08930) Chorion class CB protein PC404 (Fragment)|
          Length = 167

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 338 DPLSPWGRPYSLVMAAISCGSADPGP 415
           D LSP+  PY   + A+SCG+   GP
Sbjct: 22  DALSPFDMPYGPALPAMSCGAGSFGP 47

>LATS1_MOUSE (Q8BYR2) Serine/threonine-protein kinase LATS1 (EC 2.7.11.1) (Large|
           tumor suppressor homolog 1) (WARTS protein kinase)
          Length = 1129

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 21/83 (25%), Positives = 31/83 (37%)
 Frame = -1

Query: 654 PPRRWQPTATPETTESDGDAGIQRRHRKPPEAGDNGWQGSGAVVIPDRSPRRRRSYISDA 475
           PP  W+P++  +    + +  I R    PP A   G+        P   P + +  IS  
Sbjct: 264 PPPSWEPSSQTKRYSGNMEYVISRISPVPPGAWQEGYPPPPLTTSPMNPPSQAQRAISSV 323

Query: 474 TPLAHPRQ*STTSSRLATKGGPG 406
                P    +TS    T G PG
Sbjct: 324 PVGRQPIIMQSTSKFNFTPGRPG 346

>CXA10_MOUSE (Q9WUS4) Gap junction alpha-10 protein (Connexin-57) (Cx57)|
          Length = 505

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 29/121 (23%), Positives = 48/121 (39%)
 Frame = -1

Query: 624 PETTESDGDAGIQRRHRKPPEAGDNGWQGSGAVVIPDRSPRRRRSYISDATPLAHPRQ*S 445
           P+   S    G     +  P +    W+ S       RS   R+S+   +   A  R+  
Sbjct: 360 PKNAMSQSWFGTMTASQHRPSSALETWERSQGPEASGRSLTDRQSHFQGSDGSA--RESG 417

Query: 444 TTSSRLATKGGPGSALPQLMAAMTRL*GRPHGERGSSAYMAISPVFRYRRHSSSPTPNPS 265
             + RL    GPGS     ++ +    G+ H + GSS  +  S    +    +SP+P PS
Sbjct: 418 VWTDRL----GPGSRKASFLSRLMSEKGQRHSDSGSSRSLN-SSCLDFSHGENSPSPLPS 472

Query: 264 S 262
           +
Sbjct: 473 A 473

>TRX_DROME (P20659) Protein trithorax|
          Length = 3726

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
 Frame = +2

Query: 230 NTIPAPNIII-----CEDGLGVG------EEECLRYLKTGLIAMYAEDPLSPWGRPYSLV 376
           N  P+P I+       E G+GVG      E+  L+ + T +    A DP SP     +  
Sbjct: 329 NPSPSPPILSGSTPSVEGGIGVGGVVSPGEDAALKRVLTEMPNEVARDP-SPSSCTAAAN 387

Query: 377 MAAISCGSADPGPPLVASRLD 439
            AA   GSA  GPP +AS  D
Sbjct: 388 GAASGKGSASNGPPAMASSGD 408


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,421,464
Number of Sequences: 219361
Number of extensions: 2621952
Number of successful extensions: 8758
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 8210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8749
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)