ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd1m06 |
|---|---|
| Clone Library Name | barley_pub |
>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC| 2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5) Length = 1049 Score = 93.2 bits (230), Expect = 4e-19 Identities = 42/69 (60%), Positives = 48/69 (69%) Frame = +3 Query: 3 FGKLFFAFWVIVHLYPFLKGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRVNPFLAKTDGP 182 FGKLFFAFWVIVHLYPFLKGL+GRQNRTPT R++PFL K GP Sbjct: 981 FGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGP 1040 Query: 183 LLEECGLDC 209 LL++CG+DC Sbjct: 1041 LLKQCGVDC 1049
>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC| 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) Length = 1026 Score = 85.9 bits (211), Expect = 6e-17 Identities = 38/69 (55%), Positives = 46/69 (66%) Frame = +3 Query: 3 FGKLFFAFWVIVHLYPFLKGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRVNPFLAKTDGP 182 FGKLFF+FWVIVHLYPFLKGL+GRQNRTPT R++PF+ KT GP Sbjct: 958 FGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGP 1017 Query: 183 LLEECGLDC 209 +CG++C Sbjct: 1018 DTSKCGINC 1026
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 85.5 bits (210), Expect = 8e-17 Identities = 41/69 (59%), Positives = 47/69 (68%) Frame = +3 Query: 3 FGKLFFAFWVIVHLYPFLKGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRVNPFLAKTDGP 182 FG+LFFA WVIVHLYPFLKGLLG+Q+R PT RVNPF++K DGP Sbjct: 1019 FGRLFFALWVIVHLYPFLKGLLGKQDRVPTIILVWSILLASILTLLWVRVNPFVSK-DGP 1077 Query: 183 LLEECGLDC 209 +LE CGLDC Sbjct: 1078 VLEICGLDC 1086
>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC| 2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1 protein 1) (Isoxaben resistant protein 1) (Ath-B) Length = 1065 Score = 85.5 bits (210), Expect = 8e-17 Identities = 38/69 (55%), Positives = 46/69 (66%) Frame = +3 Query: 3 FGKLFFAFWVIVHLYPFLKGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRVNPFLAKTDGP 182 FGKLFFAFWVIVHLYPFLKGL+GRQNRTPT R++PF ++ GP Sbjct: 997 FGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDPFTSRVTGP 1056 Query: 183 LLEECGLDC 209 + ECG++C Sbjct: 1057 DILECGINC 1065
>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC| 2.4.1.12) (AtCesA-5) Length = 1069 Score = 85.1 bits (209), Expect = 1e-16 Identities = 41/69 (59%), Positives = 47/69 (68%) Frame = +3 Query: 3 FGKLFFAFWVIVHLYPFLKGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRVNPFLAKTDGP 182 FG+LFFAFWVI+HLYPFLKGLLG+Q+R PT RVNPF+AK GP Sbjct: 1001 FGRLFFAFWVILHLYPFLKGLLGKQDRMPTIILVWSILLASILTLLWVRVNPFVAK-GGP 1059 Query: 183 LLEECGLDC 209 +LE CGLDC Sbjct: 1060 ILEICGLDC 1068
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 83.6 bits (205), Expect = 3e-16 Identities = 40/69 (57%), Positives = 46/69 (66%) Frame = +3 Query: 3 FGKLFFAFWVIVHLYPFLKGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRVNPFLAKTDGP 182 FG+LFFA WVI+HLYPFLKGLLG+Q+R PT RVNPF+AK GP Sbjct: 1016 FGRLFFALWVIIHLYPFLKGLLGKQDRMPTIIVVWSILLASILTLLWVRVNPFVAK-GGP 1074 Query: 183 LLEECGLDC 209 +LE CGLDC Sbjct: 1075 ILEICGLDC 1083
>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC| 2.4.1.12) (AtCesA-2) (Ath-A) Length = 1084 Score = 79.7 bits (195), Expect = 4e-15 Identities = 38/69 (55%), Positives = 46/69 (66%) Frame = +3 Query: 3 FGKLFFAFWVIVHLYPFLKGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRVNPFLAKTDGP 182 FG+LFFA WVIVHLYPFLKG+LG+Q++ PT RVNPF+AK GP Sbjct: 1015 FGRLFFALWVIVHLYPFLKGMLGKQDKMPTIIVVWSILLASILTLLWVRVNPFVAK-GGP 1073 Query: 183 LLEECGLDC 209 +LE CGL+C Sbjct: 1074 VLEICGLNC 1082
>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC| 2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1) Length = 985 Score = 76.3 bits (186), Expect = 5e-14 Identities = 34/58 (58%), Positives = 40/58 (68%) Frame = +3 Query: 3 FGKLFFAFWVIVHLYPFLKGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRVNPFLAKTD 176 FGK+FFAFWVI+HLYPFLKGL+GRQNRTPT R+NPF++KTD Sbjct: 915 FGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVILWSILLASVFSLVWVRINPFVSKTD 972
>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC| 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) Length = 1081 Score = 68.9 bits (167), Expect = 8e-12 Identities = 32/54 (59%), Positives = 34/54 (62%) Frame = +3 Query: 3 FGKLFFAFWVIVHLYPFLKGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRVNPFL 164 FGKLFFA WVI HLYPFLKGLLGRQNRTPT R+NPF+ Sbjct: 1012 FGKLFFALWVIAHLYPFLKGLLGRQNRTPTIVIVWSVLLASIFSLLWVRINPFV 1065
>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10| [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) Length = 1065 Score = 68.6 bits (166), Expect = 1e-11 Identities = 31/56 (55%), Positives = 35/56 (62%) Frame = +3 Query: 6 GKLFFAFWVIVHLYPFLKGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRVNPFLAKT 173 GKL FAFWV+ HLYPFLKGLLGRQNRTPT R+NPF++ T Sbjct: 1000 GKLLFAFWVVAHLYPFLKGLLGRQNRTPTIVIVWSALLASIFSLLWVRINPFVSTT 1055
>KLF5_HUMAN (Q13887) Krueppel-like factor 5 (Intestinal-enriched krueppel-like| factor) (Colon krueppel-like factor) (Transcription factor BTEB2) (Basic transcription element-binding protein 2) (BTE-binding protein 2) (GC box-binding protein 2) Length = 457 Score = 33.1 bits (74), Expect = 0.48 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 2/77 (2%) Frame = -2 Query: 254 PHDRLVLIQSFHLLGAVQTALLQKRAVGLGEERVHTH--PQERDDRSQQDGPDDHDRRGP 81 P D V Q +LGA A + A+ GEE H H PQ + +Q P GP Sbjct: 21 PQDEPVFAQLKPVLGAANPA--RDAALFPGEELKHAHHRPQAQPAPAQAPQPAQPPATGP 78 Query: 80 VLPSQQTLEERVQMNNH 30 LP + ++ R +M + Sbjct: 79 RLPPEDLVQTRCEMEKY 95
>DMP1_BOVIN (Q95120) Dentin matrix acidic phosphoprotein 1 precursor (Dentin| matrix protein 1) (DMP-1) Length = 510 Score = 33.1 bits (74), Expect = 0.48 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Frame = -2 Query: 182 RAVGLGEERVHTHPQERDDRSQQDGPDD-HDRRGPVLPSQQTLEERVQMNNHPEREEELP 6 + GLG+ R H+ + R + + P+D D + P S Q ++ Q N+ +EE L Sbjct: 302 KEAGLGQSREHSKSESRQESEENRSPEDSQDVQDPSSESSQEVDLPSQENSSESQEEALH 361 Query: 5 E 3 E Sbjct: 362 E 362
>HWP1_CANAL (P46593) Hyphal wall protein 1 (Cell elongation protein 2)| Length = 634 Score = 31.6 bits (70), Expect = 1.4 Identities = 17/70 (24%), Positives = 30/70 (42%) Frame = -2 Query: 212 GAVQTALLQKRAVGLGEERVHTHPQERDDRSQQDGPDDHDRRGPVLPSQQTLEERVQMNN 33 G + AL+QKR+ +E +PQ++ + D P + P QQ +E Sbjct: 29 GETEEALIQKRSYDYYQEPCDDYPQQQQQQEPCDYPQQQQQEEPCDYPQQQPQEPCDYPQ 88 Query: 32 HPEREEELPE 3 P+ + P+ Sbjct: 89 QPQEPCDYPQ 98
>OPSD_CATBO (Q17296) Rhodopsin| Length = 378 Score = 30.8 bits (68), Expect = 2.4 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 3/25 (12%) Frame = +1 Query: 385 WVAGPHICKIFGQTG---GCGNPFT 450 WV GP +C+++G TG GCG+ +T Sbjct: 120 WVLGPLVCELYGLTGSLFGCGSIWT 144
>IF3A_HUMAN (Q14152) Eukaryotic translation initiation factor 3 subunit 10 (eIF-3| theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) Length = 1382 Score = 30.4 bits (67), Expect = 3.1 Identities = 18/54 (33%), Positives = 28/54 (51%) Frame = -2 Query: 164 EERVHTHPQERDDRSQQDGPDDHDRRGPVLPSQQTLEERVQMNNHPEREEELPE 3 ++R RD R ++D DD DRRGP L S++ EE +R+++ E Sbjct: 1271 DDRRRERDDRRDLRERRDLRDDRDRRGPPLRSER--EEVSSWRRADDRKDDRVE 1322
>MEX1_ORYSA (Q7XTQ5) Maltose excess protein 1-like, chloroplast precursor| Length = 399 Score = 30.4 bits (67), Expect = 3.1 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = -1 Query: 225 ISSPRCSPDRTPPEEGRRSWRGKGSHAPTGA 133 +SS R PP GRR WR G+ AP+ A Sbjct: 5 VSSVRLPLRAAPPLYGRREWRADGARAPSPA 35
>IF3A_MOUSE (P23116) Eukaryotic translation initiation factor 3 subunit 10 (eIF-3| theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) (p162 protein) (Centrosomin) Length = 1344 Score = 30.0 bits (66), Expect = 4.0 Identities = 17/44 (38%), Positives = 25/44 (56%) Frame = -2 Query: 134 RDDRSQQDGPDDHDRRGPVLPSQQTLEERVQMNNHPEREEELPE 3 RD R ++D DD DRRGP L S++ EE +R+++ E Sbjct: 1245 RDLRDRRDLRDDRDRRGPPLRSER--EEASSWRRTDDRKDDRTE 1286
>AHI1_HUMAN (Q8N157) Jouberin (Abelson helper integration site 1 protein| homolog) (AHI-1) Length = 1196 Score = 29.6 bits (65), Expect = 5.3 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = -2 Query: 341 FLSTQGREGGREEWKRKKNYGHKNTFKITPHDRLVLIQSFH 219 ++ T +G WK + N + NTF++ PH V FH Sbjct: 668 YILTSSSDGTARIWKNEIN--NTNTFRVLPHPSFVYTAKFH 706
>PDLI2_MOUSE (Q8R1G6) PDZ and LIM domain protein 2 (PDZ-LIM protein mystique)| Length = 349 Score = 29.3 bits (64), Expect = 6.9 Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%) Frame = -1 Query: 246 STCFDPIISSPR-CSPDRTPP 187 S CF P+ SPR CSP TPP Sbjct: 120 SACFSPVSLSPRPCSPFSTPP 140
>Y1791_AQUAE (O67660) Hypothetical protein aq_1791| Length = 127 Score = 29.3 bits (64), Expect = 6.9 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = +3 Query: 387 GSWASYMQNIWADGRLRQPLHLCAVRPRRRRKKYSQ 494 GS+ S M+N+ DGR ++ LC P R R+++ + Sbjct: 16 GSFQSVMENLVKDGRGKEIQILCMHAPPRERRRFKR 51
>CPB3_CAERE (Q6E3D4) Cytoplasmic polyadenylation element-binding protein 3| Length = 766 Score = 28.9 bits (63), Expect = 9.0 Identities = 16/47 (34%), Positives = 21/47 (44%) Frame = +1 Query: 367 IGFVPWWVAGPHICKIFGQTGGCGNPFTSVQFGHEEEERNTASQPAS 507 +G VPW + + FG+ G C + GHE RN S AS Sbjct: 312 VGGVPWDITEAALKDSFGEFGSCAVEWP----GHEARYRNAQSNTAS 354
>TLE3_MOUSE (Q08122) Transducin-like enhancer protein 3 (ESG) (Grg-3)| Length = 771 Score = 28.9 bits (63), Expect = 9.0 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -1 Query: 222 SSPRCSPDRTPPEEGRRSWRGKGSHAPT 139 ++PR SP +PPE G RG APT Sbjct: 257 ATPRVSPAHSPPENGLDKARGLKKDAPT 284
>TLE3_RAT (Q9JIT3) Transducin-like enhancer protein 3 (rTLE3)| Length = 764 Score = 28.9 bits (63), Expect = 9.0 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -1 Query: 222 SSPRCSPDRTPPEEGRRSWRGKGSHAPT 139 ++PR SP +PPE G RG APT Sbjct: 258 ATPRVSPAHSPPENGLDKARGLKKDAPT 285
>FEZ1_MOUSE (Q8K0X8) Fasciculation and elongation protein zeta 1 (Zygin-1)| (Zygin I) Length = 392 Score = 28.9 bits (63), Expect = 9.0 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = -2 Query: 155 VHTHPQERDDRSQQDGPDDHDRRGPVLPSQQTLEERVQ-MNNHPEREEE 12 + H +E ++ +++ D P+L + Q +EE + M N P+ EEE Sbjct: 136 IEIHEKEEEEFNEKSENDSGINEEPLLTADQVIEETEEMMQNSPDPEEE 184
>RPSB_ANASP (Q03065) RNA polymerase sigma-B factor| Length = 332 Score = 28.9 bits (63), Expect = 9.0 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = -2 Query: 278 HKNTFKITPHDRLVLIQSFHLLGAVQTALLQ-KRAVGLGEERV 153 H K+TP + VLI F L G + L+Q + +G+ ERV Sbjct: 266 HNLLAKLTPQQKEVLILRFGLAGGCELTLVQISQRMGISRERV 308 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,450,331 Number of Sequences: 219361 Number of extensions: 1611915 Number of successful extensions: 4915 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4709 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4906 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3985467738 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
