ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd1m04 |
|---|---|
| Clone Library Name | barley_pub |
>LRAT_HUMAN (O95237) Lecithin retinol acyltransferase (EC 2.3.1.135)| (Phosphatidylcholine--retinol O-acyltransferase) Length = 230 Score = 33.5 bits (75), Expect = 0.32 Identities = 17/36 (47%), Positives = 20/36 (55%) Frame = +3 Query: 207 SEAVVRRAMHLLQNGFGNYDIFEKNCEDFALYCKTG 314 +E V RRA LL GF Y + NCE F YC+ G Sbjct: 138 NEEVARRAEKLL--GFTPYSLLWNNCEHFVTYCRYG 171
>POL1_BAYMG (Q04574) Genome polyprotein 1 [Contains: Protein P3; 6 kDa protein| 1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa protein 2 (6K2); Viral genome-linked protein (VPg); Nuclear inclusion protein A (EC 3.4.22.44) (NI-a) (NIa) (NIa-pro); Nuclea Length = 2412 Score = 30.4 bits (67), Expect = 2.7 Identities = 16/40 (40%), Positives = 22/40 (55%) Frame = -1 Query: 412 ILNGVDRRAASGTPMAEDACPLTPMPGSSTGTSPVLQ*SA 293 + V RR + TPMAE+ P +PM S+ +P L SA Sbjct: 5 LAQAVSRRGKTNTPMAEERKPFSPMNFSANFVAPELFYSA 44
>BSN_MOUSE (O88737) Bassoon protein| Length = 3941 Score = 30.4 bits (67), Expect = 2.7 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +1 Query: 130 LSMECHQQFSLQNFVGEPAPLPNPTHQR 213 L + C + L+ +GEPAPLP PT Q+ Sbjct: 509 LCLNCQTKRLLEGSLGEPAPLPLPTPQQ 536
>SYNJ2_RAT (O55207) Synaptojanin-2 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 2) Length = 1496 Score = 30.0 bits (66), Expect = 3.6 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%) Frame = -1 Query: 454 PAVTVAIPSGPAAKILN---GVDRRAASGTPMAEDACPLTPMPGSSTGTSP 311 P +T IP P + GV+RR + G P +DA P+T S+ +P Sbjct: 1281 PPITAPIPPVPKPRTFQPGRGVERRPSGGKPEPDDAPPVTGAVELSSPEAP 1331
>CEA9_ECOLI (P09883) Colicin-E9 (EC 3.1.-.-)| Length = 582 Score = 30.0 bits (66), Expect = 3.6 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = -3 Query: 497 SYSYVGDVSTGTVHPGCDGGHSQRTG--SENLEWGGQKSCQWHANGG 363 ++S G+++ G G GG S +G SEN WGG H GG Sbjct: 13 AHSTSGNINGGPTGIGVSGGASDGSGWSSENNPWGGGSGSGIHWGGG 59
>BSN_RAT (O88778) Bassoon protein| Length = 3937 Score = 30.0 bits (66), Expect = 3.6 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +1 Query: 130 LSMECHQQFSLQNFVGEPAPLPNPTHQ 210 L + C + L+ +GEPAPLP PT Q Sbjct: 507 LCLNCQTKRLLEGSLGEPAPLPLPTPQ 533
>SLYD_SHIFL (P0A9L2) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC| 5.2.1.8) (PPIase) (Rotamase) (Histidine-rich protein) (WHP) Length = 196 Score = 29.6 bits (65), Expect = 4.7 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = -3 Query: 458 HPGCDGGHSQRTGSENLEWGGQKSCQWHANGG 363 H GC GGH G E+ GG+ C NGG Sbjct: 164 HDGCCGGHGHDHGHEH---GGEGCCGGKGNGG 192
>SLYD_ECOLI (P0A9K9) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC| 5.2.1.8) (PPIase) (Rotamase) (Histidine-rich protein) (WHP) Length = 196 Score = 29.6 bits (65), Expect = 4.7 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = -3 Query: 458 HPGCDGGHSQRTGSENLEWGGQKSCQWHANGG 363 H GC GGH G E+ GG+ C NGG Sbjct: 164 HDGCCGGHGHDHGHEH---GGEGCCGGKGNGG 192
>SLYD_ECOL6 (P0A9L0) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC| 5.2.1.8) (PPIase) (Rotamase) (Histidine-rich protein) (WHP) Length = 196 Score = 29.6 bits (65), Expect = 4.7 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = -3 Query: 458 HPGCDGGHSQRTGSENLEWGGQKSCQWHANGG 363 H GC GGH G E+ GG+ C NGG Sbjct: 164 HDGCCGGHGHDHGHEH---GGEGCCGGKGNGG 192
>SLYD_ECO57 (P0A9L1) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC| 5.2.1.8) (PPIase) (Rotamase) (Histidine-rich protein) (WHP) Length = 196 Score = 29.6 bits (65), Expect = 4.7 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = -3 Query: 458 HPGCDGGHSQRTGSENLEWGGQKSCQWHANGG 363 H GC GGH G E+ GG+ C NGG Sbjct: 164 HDGCCGGHGHDHGHEH---GGEGCCGGKGNGG 192
>CEA6_ECOLI (P17999) Colicin-E6 (EC 3.1.-.-) (Ribonuclease)| Length = 551 Score = 29.6 bits (65), Expect = 4.7 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = -3 Query: 497 SYSYVGDVSTGTVHPGCDGGHSQRTG--SENLEWGGQKSCQWHANGG 363 ++S G+++ G G GG S +G SEN WGG H GG Sbjct: 13 AHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59
>CEA3_ECOLI (P00646) Colicin-E3 (EC 3.1.-.-) (Colicin-E3 A chain)| (Ribonuclease) Length = 551 Score = 29.6 bits (65), Expect = 4.7 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = -3 Query: 497 SYSYVGDVSTGTVHPGCDGGHSQRTG--SENLEWGGQKSCQWHANGG 363 ++S G+++ G G GG S +G SEN WGG H GG Sbjct: 13 AHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59
>LRAT_BOVIN (Q9BGL2) Lecithin retinol acyltransferase (EC 2.3.1.135)| (Phosphatidylcholine--retinol O-acyltransferase) Length = 230 Score = 29.6 bits (65), Expect = 4.7 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +3 Query: 207 SEAVVRRAMHLLQNGFGNYDIFEKNCEDFALYCKTG 314 +E V +RA LL G Y + NCE F YC+ G Sbjct: 138 NEEVAQRAEKLL--GITPYSLLWNNCEHFVTYCRYG 171
>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)| Length = 3925 Score = 29.6 bits (65), Expect = 4.7 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +1 Query: 130 LSMECHQQFSLQNFVGEPAPLPNPTHQR 213 L + C + L+ +GEP PLP PT Q+ Sbjct: 510 LCLNCQTKRLLEGSLGEPTPLPPPTSQQ 537
>CEA2_ECOLI (P04419) Colicin-E2 (EC 3.1.-.-)| Length = 581 Score = 29.6 bits (65), Expect = 4.7 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = -3 Query: 497 SYSYVGDVSTGTVHPGCDGGHSQRTG--SENLEWGGQKSCQWHANGG 363 ++S G+++ G G GG S +G SEN WGG H GG Sbjct: 13 AHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59
>YEG9_SCHPO (O13991) Hypothetical oxidoreductase C26H5.09c (EC 1.-.-.-)| Length = 369 Score = 29.6 bits (65), Expect = 4.7 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 2/97 (2%) Frame = +3 Query: 135 YGVPPAIF-LAKFRGGTCTIAQSDPSEAVVRRAMHLLQNG-FGNYDIFEKNCEDFALYCK 308 YG +F LAK + T+ Q+ + A ++NG G FE + + F L+ K Sbjct: 105 YGEAKELFDLAKSKNLMLTVYQNRRFDGDFLTAKECIENGRLGEVVQFESHIDRFRLFRK 164 Query: 309 TGLVPVDEPGIGVSGQASSAIGVPLAALLSTPFKIFA 419 V PG G+ S + L TP + A Sbjct: 165 GNWKDVPNPGCGLVYDLGSHLIDQAITLFGTPHSVTA 201
>LRAT_RAT (Q9JI61) Lecithin retinol acyltransferase (EC 2.3.1.135)| (Phosphatidylcholine--retinol O-acyltransferase) Length = 231 Score = 29.3 bits (64), Expect = 6.1 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = +3 Query: 207 SEAVVRRAMHLLQNGFGNYDIFEKNCEDFALYCKTG 314 +E V RRA L G Y + NCE F YC+ G Sbjct: 138 NEEVARRAEQQL--GLTPYSLLWNNCEHFVTYCRYG 171
>LRAT_MOUSE (Q9JI60) Lecithin retinol acyltransferase (EC 2.3.1.135)| (Phosphatidylcholine--retinol O-acyltransferase) (Phosphatidylcholine-retinol-O-acyltransferase) Length = 231 Score = 29.3 bits (64), Expect = 6.1 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = +3 Query: 207 SEAVVRRAMHLLQNGFGNYDIFEKNCEDFALYCKTG 314 +E V RRA L G Y + NCE F YC+ G Sbjct: 138 NEEVARRAEQQL--GLTPYSLLWNNCEHFVTYCRYG 171
>T22D2_HUMAN (O75157) TSC22 domain family protein 2 (TSC22-related-inducible| leucine zipper protein 4) Length = 780 Score = 29.3 bits (64), Expect = 6.1 Identities = 13/33 (39%), Positives = 22/33 (66%) Frame = -1 Query: 379 GTPMAEDACPLTPMPGSSTGTSPVLQ*SAKSSQ 281 G +A+ + PL P PG++TG P++ +A+ SQ Sbjct: 282 GGAVAQSSAPLPPFPGAATGPQPMMA-AAQPSQ 313
>RL36_DAUCA (P52866) 60S ribosomal protein L36| Length = 106 Score = 29.3 bits (64), Expect = 6.1 Identities = 18/53 (33%), Positives = 26/53 (49%) Frame = -1 Query: 172 RNFARKIAGGTPYSKQ*REPLPRKQSKQVSTTPLSSS*KPQSGNVGHSDEARE 14 RN R++AG PY K+ E L + K+ K + VGHS E++E Sbjct: 44 RNLIREVAGFXPYEKRITELLKVGKDKRAL--------KVRQEKVGHSQESKE 88
>MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domains 8 (EGF-like| domain-containing protein 4) (Multiple EGF-like domain protein 4) Length = 2386 Score = 28.9 bits (63), Expect = 7.9 Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 6/73 (8%) Frame = +2 Query: 266 HIREELRGLCTLLQDWTCTCG*TRHWGERASIFR---HWRATGSSSVHPIQDFRCRSAGN 436 H R+ G C QDWT WGE R ATGS P Q C G+ Sbjct: 711 HCRKRGPGFCDECQDWT--------WGEHCERCRPGSFGNATGSRGCRPCQ---CNGHGD 759 Query: 437 ---GHRHSRDVLC 466 GH + LC Sbjct: 760 PRRGHCDNLSGLC 772
>KIFC2_MOUSE (O08672) Kinesin-like protein KIFC2| Length = 792 Score = 28.9 bits (63), Expect = 7.9 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -1 Query: 406 NGVDRRAASGTPMAEDACPLTPMPGSSTGTSP 311 +G ++ TP+ +C TP PGS TSP Sbjct: 745 SGTPSSLSTDTPLTGTSCTPTPSPGSPPSTSP 776 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,428,790 Number of Sequences: 219361 Number of extensions: 2182469 Number of successful extensions: 7028 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 6688 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7022 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
