ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd1m04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 464 e-127
2dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic D... 464 e-127
3dbj|AK105121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 464 e-127
4dbj|AK072174.1| Oryza sativa (japonica cultivar-group) cDNA clon... 464 e-127
5dbj|AK060048.1| Oryza sativa (japonica cultivar-group) cDNA clon... 464 e-127
6gb|AY110920.1| Zea mays CL34388_1 mRNA sequence 168 1e-38
7ref|XM_483638.1| Oryza sativa (japonica cultivar-group), mRNA 66 1e-07
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
9dbj|AP004704.3| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
10dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
11ref|NM_100005.2| Arabidopsis thaliana unknown protein AT1G01225 ... 48 0.028
12gb|BT024776.1| Arabidopsis thaliana At1g01225 mRNA, complete cds 48 0.028
13emb|BX818287.1|CNS0AAMT Arabidopsis thaliana Full-length cDNA Co... 48 0.028
14gb|AY087072.1| Arabidopsis thaliana clone 31323 mRNA, complete s... 48 0.028
15gb|AC023628.3|AC023628 Arabidopsis thaliana chromosome I BAC F6F... 48 0.028
16gb|AC132490.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
17gb|AC010947.6| Homo sapiens chromosome 18, clone RP11-25L3, comp... 42 1.7
18dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
19gb|AC009973.10| Homo sapiens BAC clone RP11-457P23 from 2, compl... 42 1.7
20dbj|AK068459.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
21gb|AC183678.2| Pan troglodytes BAC clone CH251-485O9 from chromo... 40 6.8
22gb|AY596539.1| Saccharum officinarum clone SCCCLR2C03C11, comple... 40 6.8
23gb|AC140286.3| Mus musculus BAC clone RP24-573E14 from chromosom... 40 6.8
24gb|AC113483.7| Mus musculus chromosome 1, clone RP23-343E12, com... 40 6.8
25gb|AC114821.4| Mus musculus BAC clone RP23-72K1 from chromosome ... 40 6.8
26gb|AC122323.3| Mus musculus BAC clone RP23-326N21 from chromosom... 40 6.8
27emb|Z99124.2|BSUB0021 Bacillus subtilis complete genome (section... 40 6.8
28gb|AC156549.8| Mus musculus chromosome 1, clone RP24-104O22, com... 40 6.8
29emb|BX571981.5| Zebrafish DNA sequence from clone DKEY-31J3 in l... 40 6.8
30gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 6.8
31dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.8
32emb|Z72503.1|CEC26C6 Caenorhabditis elegans Cosmid C26C6, comple... 40 6.8
33gb|AC120412.12| Mus musculus chromosome 5, clone RP24-447P14, co... 40 6.8
34gb|AC140553.3| Mus musculus BAC clone RP24-71M17 from 1, complet... 40 6.8
35emb|X91430.1|BSPX91430 Uncultured bacterium partial 16S rRNA gen... 40 6.8
36gb|AC119202.6| Mus musculus chromosome 8, clone RP24-185N3, comp... 40 6.8
37dbj|D26185.1|BAC180K B. subtilis DNA, 180 kilobase region of rep... 40 6.8

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  464 bits (234), Expect = e-127
 Identities = 417/478 (87%)
 Strand = Plus / Minus

                                                                            
Query: 22       cttcatcagagtgcccaacattcccagactgtggttttcagctggacgatagtggtgtcg 81
                ||||||||||||||||||| |||||||| ||||| |||||||||   |||||||||||||
Sbjct: 20305490 cttcatcagagtgcccaacgttcccagattgtgggtttcagctgcctgatagtggtgtcg 20305431

                                                                            
Query: 82       tactcacctgcttggattgcttccttggcaatggctccctctactgctttgagtatggag 141
                | |||||||||||||||||||||||| | |||||||| || |||||||| ||||| ||||
Sbjct: 20305430 tcctcacctgcttggattgcttccttcggaatggctctctatactgcttcgagtacggag 20305371

                                                                            
Query: 142      tgccaccagcaattttccttgcaaaatttcgtgggggaacctgcaccattgcccaatccg 201
                ||||| ||||  |||||||||||||  | ||||||||||||||||||||||||||||| |
Sbjct: 20305370 tgccatcagccgttttccttgcaaagctgcgtgggggaacctgcaccattgcccaatcag 20305311

                                                                            
Query: 202      acccatcagaggctgtggttcggagagctatgcacttgcttcaaaatgggtttggcaact 261
                | |||||||| | |||||| |  ||||| ||| |||| ||||||||||| ||||| || |
Sbjct: 20305310 atccatcagaagttgtggtacacagagccatgtacttacttcaaaatggctttggaaatt 20305251

                                                                            
Query: 262      acgacatattcgagaagaattgcgaggactttgcactctactgcaagactggacttgtac 321
                | |||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||| | |
Sbjct: 20305250 atgacatatttgagaacaattgcgaggactttgcactctactgcaaaactgggcttcttc 20305191

                                                                            
Query: 322      ctgtggatgaaccaggcattggggtgagcgggcaagcatcttccgccattggcgtgccac 381
                |||| || ||||| ||||||||    || ||||||||||||||||||||||| |||||| 
Sbjct: 20305190 ctgttgaggaacctggcattggaacaagtgggcaagcatcttccgccattggagtgccat 20305131

                                                                            
Query: 382      tggcagctcttctgtccaccccattcaagattttcgctgccggtccgctgggaatggcca 441
                ||||||||||||||||||| ||| | ||| |||| ||||| ||||| || ||||||||||
Sbjct: 20305130 tggcagctcttctgtccactccacttaagctttttgctgctggtccacttggaatggcca 20305071

                                                                          
Query: 442      ccgtcacagccgggatgtactgtgccggtagatacatcaccgacataggagtaagaaa 499
                | |||||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 20305070 ctgtcacagctgggatgtactgtgctggtagatacatcactgacataggagtaagaaa 20305013



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>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1439_F07
          Length = 153743

 Score =  464 bits (234), Expect = e-127
 Identities = 417/478 (87%)
 Strand = Plus / Minus

                                                                         
Query: 22    cttcatcagagtgcccaacattcccagactgtggttttcagctggacgatagtggtgtcg 81
             ||||||||||||||||||| |||||||| ||||| |||||||||   |||||||||||||
Sbjct: 84617 cttcatcagagtgcccaacgttcccagattgtgggtttcagctgcctgatagtggtgtcg 84558

                                                                         
Query: 82    tactcacctgcttggattgcttccttggcaatggctccctctactgctttgagtatggag 141
             | |||||||||||||||||||||||| | |||||||| || |||||||| ||||| ||||
Sbjct: 84557 tcctcacctgcttggattgcttccttcggaatggctctctatactgcttcgagtacggag 84498

                                                                         
Query: 142   tgccaccagcaattttccttgcaaaatttcgtgggggaacctgcaccattgcccaatccg 201
             ||||| ||||  |||||||||||||  | ||||||||||||||||||||||||||||| |
Sbjct: 84497 tgccatcagccgttttccttgcaaagctgcgtgggggaacctgcaccattgcccaatcag 84438

                                                                         
Query: 202   acccatcagaggctgtggttcggagagctatgcacttgcttcaaaatgggtttggcaact 261
             | |||||||| | |||||| |  ||||| ||| |||| ||||||||||| ||||| || |
Sbjct: 84437 atccatcagaagttgtggtacacagagccatgtacttacttcaaaatggctttggaaatt 84378

                                                                         
Query: 262   acgacatattcgagaagaattgcgaggactttgcactctactgcaagactggacttgtac 321
             | |||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||| | |
Sbjct: 84377 atgacatatttgagaacaattgcgaggactttgcactctactgcaaaactgggcttcttc 84318

                                                                         
Query: 322   ctgtggatgaaccaggcattggggtgagcgggcaagcatcttccgccattggcgtgccac 381
             |||| || ||||| ||||||||    || ||||||||||||||||||||||| |||||| 
Sbjct: 84317 ctgttgaggaacctggcattggaacaagtgggcaagcatcttccgccattggagtgccat 84258

                                                                         
Query: 382   tggcagctcttctgtccaccccattcaagattttcgctgccggtccgctgggaatggcca 441
             ||||||||||||||||||| ||| | ||| |||| ||||| ||||| || ||||||||||
Sbjct: 84257 tggcagctcttctgtccactccacttaagctttttgctgctggtccacttggaatggcca 84198

                                                                       
Query: 442   ccgtcacagccgggatgtactgtgccggtagatacatcaccgacataggagtaagaaa 499
             | |||||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 84197 ctgtcacagctgggatgtactgtgctggtagatacatcactgacataggagtaagaaa 84140



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>dbj|AK105121.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-B12, full
           insert sequence
          Length = 1099

 Score =  464 bits (234), Expect = e-127
 Identities = 417/478 (87%)
 Strand = Plus / Plus

                                                                       
Query: 22  cttcatcagagtgcccaacattcccagactgtggttttcagctggacgatagtggtgtcg 81
           ||||||||||||||||||| |||||||| ||||| |||||||||   |||||||||||||
Sbjct: 276 cttcatcagagtgcccaacgttcccagattgtgggtttcagctgcctgatagtggtgtcg 335

                                                                       
Query: 82  tactcacctgcttggattgcttccttggcaatggctccctctactgctttgagtatggag 141
           | |||||||||||||||||||||||| | |||||||| || |||||||| ||||| ||||
Sbjct: 336 tcctcacctgcttggattgcttccttcggaatggctctctatactgcttcgagtacggag 395

                                                                       
Query: 142 tgccaccagcaattttccttgcaaaatttcgtgggggaacctgcaccattgcccaatccg 201
           ||||| ||||  |||||||||||||  | ||||||||||||||||||||||||||||| |
Sbjct: 396 tgccatcagccgttttccttgcaaagctgcgtgggggaacctgcaccattgcccaatcag 455

                                                                       
Query: 202 acccatcagaggctgtggttcggagagctatgcacttgcttcaaaatgggtttggcaact 261
           | |||||||| | |||||| |  ||||| ||| |||| ||||||||||| ||||| || |
Sbjct: 456 atccatcagaagttgtggtacacagagccatgtacttacttcaaaatggctttggaaatt 515

                                                                       
Query: 262 acgacatattcgagaagaattgcgaggactttgcactctactgcaagactggacttgtac 321
           | |||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||| | |
Sbjct: 516 atgacatatttgagaacaattgcgaggactttgcactctactgcaaaactgggcttcttc 575

                                                                       
Query: 322 ctgtggatgaaccaggcattggggtgagcgggcaagcatcttccgccattggcgtgccac 381
           |||| || ||||| ||||||||    || ||||||||||||||||||||||| |||||| 
Sbjct: 576 ctgttgaggaacctggcattggaacaagtgggcaagcatcttccgccattggagtgccat 635

                                                                       
Query: 382 tggcagctcttctgtccaccccattcaagattttcgctgccggtccgctgggaatggcca 441
           ||||||||||||||||||| ||| | ||| |||| ||||| ||||| || ||||||||||
Sbjct: 636 tggcagctcttctgtccactccacttaagctttttgctgctggtccacttggaatggcca 695

                                                                     
Query: 442 ccgtcacagccgggatgtactgtgccggtagatacatcaccgacataggagtaagaaa 499
           | |||||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 696 ctgtcacagctgggatgtactgtgctggtagatacatcactgacataggagtaagaaa 753



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>dbj|AK072174.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135P13, full
            insert sequence
          Length = 3195

 Score =  464 bits (234), Expect = e-127
 Identities = 417/478 (87%)
 Strand = Plus / Plus

                                                                        
Query: 22   cttcatcagagtgcccaacattcccagactgtggttttcagctggacgatagtggtgtcg 81
            ||||||||||||||||||| |||||||| ||||| |||||||||   |||||||||||||
Sbjct: 2182 cttcatcagagtgcccaacgttcccagattgtgggtttcagctgcctgatagtggtgtcg 2241

                                                                        
Query: 82   tactcacctgcttggattgcttccttggcaatggctccctctactgctttgagtatggag 141
            | |||||||||||||||||||||||| | |||||||| || |||||||| ||||| ||||
Sbjct: 2242 tcctcacctgcttggattgcttccttcggaatggctctctatactgcttcgagtacggag 2301

                                                                        
Query: 142  tgccaccagcaattttccttgcaaaatttcgtgggggaacctgcaccattgcccaatccg 201
            ||||| ||||  |||||||||||||  | ||||||||||||||||||||||||||||| |
Sbjct: 2302 tgccatcagccgttttccttgcaaagctgcgtgggggaacctgcaccattgcccaatcag 2361

                                                                        
Query: 202  acccatcagaggctgtggttcggagagctatgcacttgcttcaaaatgggtttggcaact 261
            | |||||||| | |||||| |  ||||| ||| |||| ||||||||||| ||||| || |
Sbjct: 2362 atccatcagaagttgtggtacacagagccatgtacttacttcaaaatggctttggaaatt 2421

                                                                        
Query: 262  acgacatattcgagaagaattgcgaggactttgcactctactgcaagactggacttgtac 321
            | |||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||| | |
Sbjct: 2422 atgacatatttgagaacaattgcgaggactttgcactctactgcaaaactgggcttcttc 2481

                                                                        
Query: 322  ctgtggatgaaccaggcattggggtgagcgggcaagcatcttccgccattggcgtgccac 381
            |||| || ||||| ||||||||    || ||||||||||||||||||||||| |||||| 
Sbjct: 2482 ctgttgaggaacctggcattggaacaagtgggcaagcatcttccgccattggagtgccat 2541

                                                                        
Query: 382  tggcagctcttctgtccaccccattcaagattttcgctgccggtccgctgggaatggcca 441
            ||||||||||||||||||| ||| | ||| |||| ||||| ||||| || ||||||||||
Sbjct: 2542 tggcagctcttctgtccactccacttaagctttttgctgctggtccacttggaatggcca 2601

                                                                      
Query: 442  ccgtcacagccgggatgtactgtgccggtagatacatcaccgacataggagtaagaaa 499
            | |||||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 2602 ctgtcacagctgggatgtactgtgctggtagatacatcactgacataggagtaagaaa 2659



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>dbj|AK060048.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-H07, full
           insert sequence
          Length = 1044

 Score =  464 bits (234), Expect = e-127
 Identities = 417/478 (87%)
 Strand = Plus / Plus

                                                                       
Query: 22  cttcatcagagtgcccaacattcccagactgtggttttcagctggacgatagtggtgtcg 81
           ||||||||||||||||||| |||||||| ||||| |||||||||   |||||||||||||
Sbjct: 272 cttcatcagagtgcccaacgttcccagattgtgggtttcagctgcctgatagtggtgtcg 331

                                                                       
Query: 82  tactcacctgcttggattgcttccttggcaatggctccctctactgctttgagtatggag 141
           | |||||||||||||||||||||||| | |||||||| || |||||||| ||||| ||||
Sbjct: 332 tcctcacctgcttggattgcttccttcggaatggctctctatactgcttcgagtacggag 391

                                                                       
Query: 142 tgccaccagcaattttccttgcaaaatttcgtgggggaacctgcaccattgcccaatccg 201
           ||||| ||||  |||||||||||||  | ||||||||||||||||||||||||||||| |
Sbjct: 392 tgccatcagccgttttccttgcaaagctgcgtgggggaacctgcaccattgcccaatcag 451

                                                                       
Query: 202 acccatcagaggctgtggttcggagagctatgcacttgcttcaaaatgggtttggcaact 261
           | |||||||| | |||||| |  ||||| ||| |||| ||||||||||| ||||| || |
Sbjct: 452 atccatcagaagttgtggtacacagagccatgtacttacttcaaaatggctttggaaatt 511

                                                                       
Query: 262 acgacatattcgagaagaattgcgaggactttgcactctactgcaagactggacttgtac 321
           | |||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||| | |
Sbjct: 512 atgacatatttgagaacaattgcgaggactttgcactctactgcaaaactgggcttcttc 571

                                                                       
Query: 322 ctgtggatgaaccaggcattggggtgagcgggcaagcatcttccgccattggcgtgccac 381
           |||| || ||||| ||||||||    || ||||||||||||||||||||||| |||||| 
Sbjct: 572 ctgttgaggaacctggcattggaacaagtgggcaagcatcttccgccattggagtgccat 631

                                                                       
Query: 382 tggcagctcttctgtccaccccattcaagattttcgctgccggtccgctgggaatggcca 441
           ||||||||||||||||||| ||| | ||| |||| ||||| ||||| || ||||||||||
Sbjct: 632 tggcagctcttctgtccactccacttaagctttttgctgctggtccacttggaatggcca 691

                                                                     
Query: 442 ccgtcacagccgggatgtactgtgccggtagatacatcaccgacataggagtaagaaa 499
           | |||||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 692 ctgtcacagctgggatgtactgtgctggtagatacatcactgacataggagtaagaaa 749



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>gb|AY110920.1| Zea mays CL34388_1 mRNA sequence
          Length = 598

 Score =  168 bits (85), Expect = 1e-38
 Identities = 178/209 (85%)
 Strand = Plus / Plus

                                                                       
Query: 288 gactttgcactctactgcaagactggacttgtacctgtggatgaaccaggcattggggtg 347
           ||||| |||||||||||||||||||| ||| ||||||| || || || |||||||||   
Sbjct: 7   gacttcgcactctactgcaagactgggcttctacctgttgaggagcctggcattgggact 66

                                                                       
Query: 348 agcgggcaagcatcttccgccattggcgtgccactggcagctcttctgtccaccccattc 407
           || |||||||| ||||| || ||||| |||||  ||||||||||||||||||| || |||
Sbjct: 67  agtgggcaagcttcttctgctattggtgtgccgttggcagctcttctgtccactccgttc 126

                                                                       
Query: 408 aagattttcgctgccggtccgctgggaatggccaccgtcacagccgggatgtactgtgcc 467
           ||| || | ||||| |||||||| ||||||||||| ||||| || |||||||||||||| 
Sbjct: 127 aagcttctggctgctggtccgcttggaatggccactgtcacggctgggatgtactgtgct 186

                                        
Query: 468 ggtagatacatcaccgacataggagtaag 496
           || |||||||| || ||||||||||||||
Sbjct: 187 ggcagatacattactgacataggagtaag 215



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>ref|XM_483638.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 909

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                
Query: 435 atggccaccgtcacagccgggatgtactgtgccggtagatacatcaccgacat 487
           |||||| ||||||| |||||||||||||| ||||| || ||||||||||||||
Sbjct: 664 atggccgccgtcaccgccgggatgtactgcgccggcaggtacatcaccgacat 716



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                       
Query: 231 atgcacttgcttcaaaatgggtttggcaactacgacatattcgagaagaattgcgaggac 290
           |||||| |||| || || ||||| |||| ||||||| | |||||||| || |||||||||
Sbjct: 457 atgcacctgctccagaacgggttcggcagctacgacgtgttcgagaacaactgcgaggac 516

                               
Query: 291 tttgcactctactgcaagac 310
           || || ||||||||||||||
Sbjct: 517 ttcgcgctctactgcaagac 536



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                     
Query: 435      atggccaccgtcacagccgggatgtactgtgccggtagatacatcaccgacat 487
                |||||| ||||||| |||||||||||||| ||||| || ||||||||||||||
Sbjct: 27386525 atggccgccgtcaccgccgggatgtactgcgccggcaggtacatcaccgacat 27386473



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                            
Query: 231      atgcacttgcttcaaaatgggtttggcaactacgacatattcgagaagaattgcgaggac 290
                |||||| |||| || || ||||| |||| ||||||| | |||||||| || |||||||||
Sbjct: 27386732 atgcacctgctccagaacgggttcggcagctacgacgtgttcgagaacaactgcgaggac 27386673

                                    
Query: 291      tttgcactctactgcaagac 310
                || || ||||||||||||||
Sbjct: 27386672 ttcgcgctctactgcaagac 27386653



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>dbj|AP004704.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0544G09
          Length = 137481

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                  
Query: 435   atggccaccgtcacagccgggatgtactgtgccggtagatacatcaccgacat 487
             |||||| ||||||| |||||||||||||| ||||| || ||||||||||||||
Sbjct: 13320 atggccgccgtcaccgccgggatgtactgcgccggcaggtacatcaccgacat 13268



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                         
Query: 231   atgcacttgcttcaaaatgggtttggcaactacgacatattcgagaagaattgcgaggac 290
             |||||| |||| || || ||||| |||| ||||||| | |||||||| || |||||||||
Sbjct: 13527 atgcacctgctccagaacgggttcggcagctacgacgtgttcgagaacaactgcgaggac 13468

                                 
Query: 291   tttgcactctactgcaagac 310
             || || ||||||||||||||
Sbjct: 13467 ttcgcgctctactgcaagac 13448



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>dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1323_A06
          Length = 95665

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                  
Query: 435   atggccaccgtcacagccgggatgtactgtgccggtagatacatcaccgacat 487
             |||||| ||||||| |||||||||||||| ||||| || ||||||||||||||
Sbjct: 88052 atggccgccgtcaccgccgggatgtactgcgccggcaggtacatcaccgacat 88000



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                         
Query: 231   atgcacttgcttcaaaatgggtttggcaactacgacatattcgagaagaattgcgaggac 290
             |||||| |||| || || ||||| |||| ||||||| | |||||||| || |||||||||
Sbjct: 88259 atgcacctgctccagaacgggttcggcagctacgacgtgttcgagaacaactgcgaggac 88200

                                 
Query: 291   tttgcactctactgcaagac 310
             || || ||||||||||||||
Sbjct: 88199 ttcgcgctctactgcaagac 88180



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>ref|NM_100005.2| Arabidopsis thaliana unknown protein AT1G01225 mRNA, complete cds
          Length = 1025

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 243 caaaatgggtttggcaactacgacatattcgagaagaattgcgaggactttgcactctac 302
           ||||| || ||||||||||||||||| ||| |||| || || ||||| || || ||||| 
Sbjct: 483 caaaacggatttggcaactacgacattttcaagaacaactgtgaggatttcgcgctctat 542

                   
Query: 303 tgcaagac 310
           ||||||||
Sbjct: 543 tgcaagac 550



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>gb|BT024776.1| Arabidopsis thaliana At1g01225 mRNA, complete cds
          Length = 783

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 243 caaaatgggtttggcaactacgacatattcgagaagaattgcgaggactttgcactctac 302
           ||||| || ||||||||||||||||| ||| |||| || || ||||| || || ||||| 
Sbjct: 406 caaaacggatttggcaactacgacattttcaagaacaactgtgaggatttcgcgctctat 465

                   
Query: 303 tgcaagac 310
           ||||||||
Sbjct: 466 tgcaagac 473



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>emb|BX818287.1|CNS0AAMT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL70ZH04 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1021

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 243 caaaatgggtttggcaactacgacatattcgagaagaattgcgaggactttgcactctac 302
           ||||| || ||||||||||||||||| ||| |||| || || ||||| || || ||||| 
Sbjct: 483 caaaacggatttggcaactacgacattttcaagaacaactgtgaggatttcgcgctctat 542

                   
Query: 303 tgcaagac 310
           ||||||||
Sbjct: 543 tgcaagac 550



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>gb|AY087072.1| Arabidopsis thaliana clone 31323 mRNA, complete sequence
          Length = 982

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 243 caaaatgggtttggcaactacgacatattcgagaagaattgcgaggactttgcactctac 302
           ||||| || ||||||||||||||||| ||| |||| || || ||||| || || ||||| 
Sbjct: 450 caaaacggatttggcaactacgacattttcaagaacaactgtgaggatttcgcgctctat 509

                   
Query: 303 tgcaagac 310
           ||||||||
Sbjct: 510 tgcaagac 517



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>gb|AC023628.3|AC023628 Arabidopsis thaliana chromosome I BAC F6F3 genomic sequence, complete
             sequence
          Length = 104001

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                         
Query: 243   caaaatgggtttggcaactacgacatattcgagaagaattgcgaggactttgcactctac 302
             ||||| || ||||||||||||||||| ||| |||| || || ||||| || || ||||| 
Sbjct: 37773 caaaacggatttggcaactacgacattttcaagaacaactgtgaggatttcgcgctctat 37832

                     
Query: 303   tgcaagac 310
             ||||||||
Sbjct: 37833 tgcaagac 37840



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>gb|AC132490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0570A02,
              complete sequence
          Length = 146541

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                   
Query: 274    agaagaattgcgaggactttgcactctactgcaagac 310
              |||| |||||||||||||||||  | |||||||||||
Sbjct: 113060 agaacaattgcgaggactttgcgatatactgcaagac 113024



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>gb|AC010947.6| Homo sapiens chromosome 18, clone RP11-25L3, complete sequence
          Length = 185470

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 381    ctggcagctcttctgtccacc 401
              |||||||||||||||||||||
Sbjct: 166587 ctggcagctcttctgtccacc 166607



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 274      agaagaattgcgaggactttgcactctactgcaagac 310
                |||| |||||||||||||||||  | |||||||||||
Sbjct: 14032983 agaacaattgcgaggactttgcgatatactgcaagac 14032947



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>gb|AC009973.10| Homo sapiens BAC clone RP11-457P23 from 2, complete sequence
          Length = 202383

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 150    gcaattttccttgcaaaattt 170
              |||||||||||||||||||||
Sbjct: 114732 gcaattttccttgcaaaattt 114752



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>dbj|AK068459.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151C17, full
            insert sequence
          Length = 3464

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 274  agaagaattgcgaggactttgcactctactgcaagac 310
            |||| |||||||||||||||||  | |||||||||||
Sbjct: 2617 agaacaattgcgaggactttgcgatatactgcaagac 2581



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>gb|AC183678.2| Pan troglodytes BAC clone CH251-485O9 from chromosome 22, complete
              sequence
          Length = 209755

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 309    actggacttgtacctgtgga 328
              ||||||||||||||||||||
Sbjct: 201594 actggacttgtacctgtgga 201613



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>gb|AY596539.1| Saccharum officinarum clone SCCCLR2C03C11, complete sequence
          Length = 1456

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 282 tgcgaggactttgcactctactgcaagactgg 313
           ||||||||||||||  | ||||||||||||||
Sbjct: 747 tgcgaggactttgccatatactgcaagactgg 778



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>gb|AC140286.3| Mus musculus BAC clone RP24-573E14 from chromosome 5, complete
            sequence
          Length = 164620

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 307  agactggacttgtacctgtggatg 330
            ||||||| ||||||||||||||||
Sbjct: 7666 agactggccttgtacctgtggatg 7689



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>gb|AC113483.7| Mus musculus chromosome 1, clone RP23-343E12, complete sequence
          Length = 207188

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   actgcaagactggacttgta 320
             ||||||||||||||||||||
Sbjct: 20306 actgcaagactggacttgta 20325



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>gb|AC114821.4| Mus musculus BAC clone RP23-72K1 from chromosome 1, complete sequence
          Length = 197978

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 317   tgtacctgtggatgaaccag 336
             ||||||||||||||||||||
Sbjct: 38082 tgtacctgtggatgaaccag 38101



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>gb|AC122323.3| Mus musculus BAC clone RP23-326N21 from chromosome 8, complete sequence
          Length = 212949

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 385   cagctcttctgtccacccca 404
             ||||||||||||||||||||
Sbjct: 94042 cagctcttctgtccacccca 94023



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>emb|Z99124.2|BSUB0021 Bacillus subtilis complete genome (section 21 of 21): from 4010730 to
              4214630
          Length = 203901

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 148    cagcaattttccttgcaaaa 167
              ||||||||||||||||||||
Sbjct: 158675 cagcaattttccttgcaaaa 158656



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>gb|AC156549.8| Mus musculus chromosome 1, clone RP24-104O22, complete sequence
          Length = 164489

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 301   actgcaagactggacttgta 320
             ||||||||||||||||||||
Sbjct: 32378 actgcaagactggacttgta 32359



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>emb|BX571981.5| Zebrafish DNA sequence from clone DKEY-31J3 in linkage group 14, complete
              sequence
          Length = 258091

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     ttcccagactgtggttttca 61
              ||||||||||||||||||||
Sbjct: 220504 ttcccagactgtggttttca 220523



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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 104     ccttggcaatggctccctct 123
               ||||||||||||||||||||
Sbjct: 1587001 ccttggcaatggctccctct 1586982



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 425     tccgctgggaatggccaccgtcac 448
               |||||||||||||||||| |||||
Sbjct: 7729594 tccgctgggaatggccacggtcac 7729571



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>emb|Z72503.1|CEC26C6 Caenorhabditis elegans Cosmid C26C6, complete sequence
          Length = 42472

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   caattttccttgcaaaattt 170
             ||||||||||||||||||||
Sbjct: 11179 caattttccttgcaaaattt 11198



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>gb|AC120412.12| Mus musculus chromosome 5, clone RP24-447P14, complete sequence
          Length = 149454

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 307   agactggacttgtacctgtggatg 330
             ||||||| ||||||||||||||||
Sbjct: 25656 agactggccttgtacctgtggatg 25679



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>gb|AC140553.3| Mus musculus BAC clone RP24-71M17 from 1, complete sequence
          Length = 217538

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 317    tgtacctgtggatgaaccag 336
              ||||||||||||||||||||
Sbjct: 159008 tgtacctgtggatgaaccag 159027



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>emb|X91430.1|BSPX91430 Uncultured bacterium partial 16S rRNA gene (clone group A7hq)
          Length = 855

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 24  tcatcagagtgcccaacatt 43
           ||||||||||||||||||||
Sbjct: 619 tcatcagagtgcccaacatt 600



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>gb|AC119202.6| Mus musculus chromosome 8, clone RP24-185N3, complete sequence
          Length = 159765

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 140   agtgccaccagcaattttcc 159
             ||||||||||||||||||||
Sbjct: 47591 agtgccaccagcaattttcc 47572



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>dbj|D26185.1|BAC180K B. subtilis DNA, 180 kilobase region of replication origin
          Length = 180136

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   cagcaattttccttgcaaaa 167
             ||||||||||||||||||||
Sbjct: 18376 cagcaattttccttgcaaaa 18357


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,417,853
Number of Sequences: 3902068
Number of extensions: 3417853
Number of successful extensions: 56064
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55936
Number of HSP's gapped (non-prelim): 123
length of query: 499
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 477
effective length of database: 17,147,199,772
effective search space: 8179214291244
effective search space used: 8179214291244
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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