| Clone Name | basd1m04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 464 bits (234), Expect = e-127 Identities = 417/478 (87%) Strand = Plus / Minus Query: 22 cttcatcagagtgcccaacattcccagactgtggttttcagctggacgatagtggtgtcg 81 ||||||||||||||||||| |||||||| ||||| ||||||||| ||||||||||||| Sbjct: 20305490 cttcatcagagtgcccaacgttcccagattgtgggtttcagctgcctgatagtggtgtcg 20305431 Query: 82 tactcacctgcttggattgcttccttggcaatggctccctctactgctttgagtatggag 141 | |||||||||||||||||||||||| | |||||||| || |||||||| ||||| |||| Sbjct: 20305430 tcctcacctgcttggattgcttccttcggaatggctctctatactgcttcgagtacggag 20305371 Query: 142 tgccaccagcaattttccttgcaaaatttcgtgggggaacctgcaccattgcccaatccg 201 ||||| |||| ||||||||||||| | ||||||||||||||||||||||||||||| | Sbjct: 20305370 tgccatcagccgttttccttgcaaagctgcgtgggggaacctgcaccattgcccaatcag 20305311 Query: 202 acccatcagaggctgtggttcggagagctatgcacttgcttcaaaatgggtttggcaact 261 | |||||||| | |||||| | ||||| ||| |||| ||||||||||| ||||| || | Sbjct: 20305310 atccatcagaagttgtggtacacagagccatgtacttacttcaaaatggctttggaaatt 20305251 Query: 262 acgacatattcgagaagaattgcgaggactttgcactctactgcaagactggacttgtac 321 | |||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||| | | Sbjct: 20305250 atgacatatttgagaacaattgcgaggactttgcactctactgcaaaactgggcttcttc 20305191 Query: 322 ctgtggatgaaccaggcattggggtgagcgggcaagcatcttccgccattggcgtgccac 381 |||| || ||||| |||||||| || ||||||||||||||||||||||| |||||| Sbjct: 20305190 ctgttgaggaacctggcattggaacaagtgggcaagcatcttccgccattggagtgccat 20305131 Query: 382 tggcagctcttctgtccaccccattcaagattttcgctgccggtccgctgggaatggcca 441 ||||||||||||||||||| ||| | ||| |||| ||||| ||||| || |||||||||| Sbjct: 20305130 tggcagctcttctgtccactccacttaagctttttgctgctggtccacttggaatggcca 20305071 Query: 442 ccgtcacagccgggatgtactgtgccggtagatacatcaccgacataggagtaagaaa 499 | |||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct: 20305070 ctgtcacagctgggatgtactgtgctggtagatacatcactgacataggagtaagaaa 20305013
>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1439_F07 Length = 153743 Score = 464 bits (234), Expect = e-127 Identities = 417/478 (87%) Strand = Plus / Minus Query: 22 cttcatcagagtgcccaacattcccagactgtggttttcagctggacgatagtggtgtcg 81 ||||||||||||||||||| |||||||| ||||| ||||||||| ||||||||||||| Sbjct: 84617 cttcatcagagtgcccaacgttcccagattgtgggtttcagctgcctgatagtggtgtcg 84558 Query: 82 tactcacctgcttggattgcttccttggcaatggctccctctactgctttgagtatggag 141 | |||||||||||||||||||||||| | |||||||| || |||||||| ||||| |||| Sbjct: 84557 tcctcacctgcttggattgcttccttcggaatggctctctatactgcttcgagtacggag 84498 Query: 142 tgccaccagcaattttccttgcaaaatttcgtgggggaacctgcaccattgcccaatccg 201 ||||| |||| ||||||||||||| | ||||||||||||||||||||||||||||| | Sbjct: 84497 tgccatcagccgttttccttgcaaagctgcgtgggggaacctgcaccattgcccaatcag 84438 Query: 202 acccatcagaggctgtggttcggagagctatgcacttgcttcaaaatgggtttggcaact 261 | |||||||| | |||||| | ||||| ||| |||| ||||||||||| ||||| || | Sbjct: 84437 atccatcagaagttgtggtacacagagccatgtacttacttcaaaatggctttggaaatt 84378 Query: 262 acgacatattcgagaagaattgcgaggactttgcactctactgcaagactggacttgtac 321 | |||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||| | | Sbjct: 84377 atgacatatttgagaacaattgcgaggactttgcactctactgcaaaactgggcttcttc 84318 Query: 322 ctgtggatgaaccaggcattggggtgagcgggcaagcatcttccgccattggcgtgccac 381 |||| || ||||| |||||||| || ||||||||||||||||||||||| |||||| Sbjct: 84317 ctgttgaggaacctggcattggaacaagtgggcaagcatcttccgccattggagtgccat 84258 Query: 382 tggcagctcttctgtccaccccattcaagattttcgctgccggtccgctgggaatggcca 441 ||||||||||||||||||| ||| | ||| |||| ||||| ||||| || |||||||||| Sbjct: 84257 tggcagctcttctgtccactccacttaagctttttgctgctggtccacttggaatggcca 84198 Query: 442 ccgtcacagccgggatgtactgtgccggtagatacatcaccgacataggagtaagaaa 499 | |||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct: 84197 ctgtcacagctgggatgtactgtgctggtagatacatcactgacataggagtaagaaa 84140
>dbj|AK105121.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-B12, full insert sequence Length = 1099 Score = 464 bits (234), Expect = e-127 Identities = 417/478 (87%) Strand = Plus / Plus Query: 22 cttcatcagagtgcccaacattcccagactgtggttttcagctggacgatagtggtgtcg 81 ||||||||||||||||||| |||||||| ||||| ||||||||| ||||||||||||| Sbjct: 276 cttcatcagagtgcccaacgttcccagattgtgggtttcagctgcctgatagtggtgtcg 335 Query: 82 tactcacctgcttggattgcttccttggcaatggctccctctactgctttgagtatggag 141 | |||||||||||||||||||||||| | |||||||| || |||||||| ||||| |||| Sbjct: 336 tcctcacctgcttggattgcttccttcggaatggctctctatactgcttcgagtacggag 395 Query: 142 tgccaccagcaattttccttgcaaaatttcgtgggggaacctgcaccattgcccaatccg 201 ||||| |||| ||||||||||||| | ||||||||||||||||||||||||||||| | Sbjct: 396 tgccatcagccgttttccttgcaaagctgcgtgggggaacctgcaccattgcccaatcag 455 Query: 202 acccatcagaggctgtggttcggagagctatgcacttgcttcaaaatgggtttggcaact 261 | |||||||| | |||||| | ||||| ||| |||| ||||||||||| ||||| || | Sbjct: 456 atccatcagaagttgtggtacacagagccatgtacttacttcaaaatggctttggaaatt 515 Query: 262 acgacatattcgagaagaattgcgaggactttgcactctactgcaagactggacttgtac 321 | |||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||| | | Sbjct: 516 atgacatatttgagaacaattgcgaggactttgcactctactgcaaaactgggcttcttc 575 Query: 322 ctgtggatgaaccaggcattggggtgagcgggcaagcatcttccgccattggcgtgccac 381 |||| || ||||| |||||||| || ||||||||||||||||||||||| |||||| Sbjct: 576 ctgttgaggaacctggcattggaacaagtgggcaagcatcttccgccattggagtgccat 635 Query: 382 tggcagctcttctgtccaccccattcaagattttcgctgccggtccgctgggaatggcca 441 ||||||||||||||||||| ||| | ||| |||| ||||| ||||| || |||||||||| Sbjct: 636 tggcagctcttctgtccactccacttaagctttttgctgctggtccacttggaatggcca 695 Query: 442 ccgtcacagccgggatgtactgtgccggtagatacatcaccgacataggagtaagaaa 499 | |||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct: 696 ctgtcacagctgggatgtactgtgctggtagatacatcactgacataggagtaagaaa 753
>dbj|AK072174.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135P13, full insert sequence Length = 3195 Score = 464 bits (234), Expect = e-127 Identities = 417/478 (87%) Strand = Plus / Plus Query: 22 cttcatcagagtgcccaacattcccagactgtggttttcagctggacgatagtggtgtcg 81 ||||||||||||||||||| |||||||| ||||| ||||||||| ||||||||||||| Sbjct: 2182 cttcatcagagtgcccaacgttcccagattgtgggtttcagctgcctgatagtggtgtcg 2241 Query: 82 tactcacctgcttggattgcttccttggcaatggctccctctactgctttgagtatggag 141 | |||||||||||||||||||||||| | |||||||| || |||||||| ||||| |||| Sbjct: 2242 tcctcacctgcttggattgcttccttcggaatggctctctatactgcttcgagtacggag 2301 Query: 142 tgccaccagcaattttccttgcaaaatttcgtgggggaacctgcaccattgcccaatccg 201 ||||| |||| ||||||||||||| | ||||||||||||||||||||||||||||| | Sbjct: 2302 tgccatcagccgttttccttgcaaagctgcgtgggggaacctgcaccattgcccaatcag 2361 Query: 202 acccatcagaggctgtggttcggagagctatgcacttgcttcaaaatgggtttggcaact 261 | |||||||| | |||||| | ||||| ||| |||| ||||||||||| ||||| || | Sbjct: 2362 atccatcagaagttgtggtacacagagccatgtacttacttcaaaatggctttggaaatt 2421 Query: 262 acgacatattcgagaagaattgcgaggactttgcactctactgcaagactggacttgtac 321 | |||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||| | | Sbjct: 2422 atgacatatttgagaacaattgcgaggactttgcactctactgcaaaactgggcttcttc 2481 Query: 322 ctgtggatgaaccaggcattggggtgagcgggcaagcatcttccgccattggcgtgccac 381 |||| || ||||| |||||||| || ||||||||||||||||||||||| |||||| Sbjct: 2482 ctgttgaggaacctggcattggaacaagtgggcaagcatcttccgccattggagtgccat 2541 Query: 382 tggcagctcttctgtccaccccattcaagattttcgctgccggtccgctgggaatggcca 441 ||||||||||||||||||| ||| | ||| |||| ||||| ||||| || |||||||||| Sbjct: 2542 tggcagctcttctgtccactccacttaagctttttgctgctggtccacttggaatggcca 2601 Query: 442 ccgtcacagccgggatgtactgtgccggtagatacatcaccgacataggagtaagaaa 499 | |||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct: 2602 ctgtcacagctgggatgtactgtgctggtagatacatcactgacataggagtaagaaa 2659
>dbj|AK060048.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-H07, full insert sequence Length = 1044 Score = 464 bits (234), Expect = e-127 Identities = 417/478 (87%) Strand = Plus / Plus Query: 22 cttcatcagagtgcccaacattcccagactgtggttttcagctggacgatagtggtgtcg 81 ||||||||||||||||||| |||||||| ||||| ||||||||| ||||||||||||| Sbjct: 272 cttcatcagagtgcccaacgttcccagattgtgggtttcagctgcctgatagtggtgtcg 331 Query: 82 tactcacctgcttggattgcttccttggcaatggctccctctactgctttgagtatggag 141 | |||||||||||||||||||||||| | |||||||| || |||||||| ||||| |||| Sbjct: 332 tcctcacctgcttggattgcttccttcggaatggctctctatactgcttcgagtacggag 391 Query: 142 tgccaccagcaattttccttgcaaaatttcgtgggggaacctgcaccattgcccaatccg 201 ||||| |||| ||||||||||||| | ||||||||||||||||||||||||||||| | Sbjct: 392 tgccatcagccgttttccttgcaaagctgcgtgggggaacctgcaccattgcccaatcag 451 Query: 202 acccatcagaggctgtggttcggagagctatgcacttgcttcaaaatgggtttggcaact 261 | |||||||| | |||||| | ||||| ||| |||| ||||||||||| ||||| || | Sbjct: 452 atccatcagaagttgtggtacacagagccatgtacttacttcaaaatggctttggaaatt 511 Query: 262 acgacatattcgagaagaattgcgaggactttgcactctactgcaagactggacttgtac 321 | |||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||| | | Sbjct: 512 atgacatatttgagaacaattgcgaggactttgcactctactgcaaaactgggcttcttc 571 Query: 322 ctgtggatgaaccaggcattggggtgagcgggcaagcatcttccgccattggcgtgccac 381 |||| || ||||| |||||||| || ||||||||||||||||||||||| |||||| Sbjct: 572 ctgttgaggaacctggcattggaacaagtgggcaagcatcttccgccattggagtgccat 631 Query: 382 tggcagctcttctgtccaccccattcaagattttcgctgccggtccgctgggaatggcca 441 ||||||||||||||||||| ||| | ||| |||| ||||| ||||| || |||||||||| Sbjct: 632 tggcagctcttctgtccactccacttaagctttttgctgctggtccacttggaatggcca 691 Query: 442 ccgtcacagccgggatgtactgtgccggtagatacatcaccgacataggagtaagaaa 499 | |||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct: 692 ctgtcacagctgggatgtactgtgctggtagatacatcactgacataggagtaagaaa 749
>gb|AY110920.1| Zea mays CL34388_1 mRNA sequence Length = 598 Score = 168 bits (85), Expect = 1e-38 Identities = 178/209 (85%) Strand = Plus / Plus Query: 288 gactttgcactctactgcaagactggacttgtacctgtggatgaaccaggcattggggtg 347 ||||| |||||||||||||||||||| ||| ||||||| || || || ||||||||| Sbjct: 7 gacttcgcactctactgcaagactgggcttctacctgttgaggagcctggcattgggact 66 Query: 348 agcgggcaagcatcttccgccattggcgtgccactggcagctcttctgtccaccccattc 407 || |||||||| ||||| || ||||| ||||| ||||||||||||||||||| || ||| Sbjct: 67 agtgggcaagcttcttctgctattggtgtgccgttggcagctcttctgtccactccgttc 126 Query: 408 aagattttcgctgccggtccgctgggaatggccaccgtcacagccgggatgtactgtgcc 467 ||| || | ||||| |||||||| ||||||||||| ||||| || |||||||||||||| Sbjct: 127 aagcttctggctgctggtccgcttggaatggccactgtcacggctgggatgtactgtgct 186 Query: 468 ggtagatacatcaccgacataggagtaag 496 || |||||||| || |||||||||||||| Sbjct: 187 ggcagatacattactgacataggagtaag 215
>ref|XM_483638.1| Oryza sativa (japonica cultivar-group), mRNA Length = 909 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 435 atggccaccgtcacagccgggatgtactgtgccggtagatacatcaccgacat 487 |||||| ||||||| |||||||||||||| ||||| || |||||||||||||| Sbjct: 664 atggccgccgtcaccgccgggatgtactgcgccggcaggtacatcaccgacat 716 Score = 63.9 bits (32), Expect = 5e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 231 atgcacttgcttcaaaatgggtttggcaactacgacatattcgagaagaattgcgaggac 290 |||||| |||| || || ||||| |||| ||||||| | |||||||| || ||||||||| Sbjct: 457 atgcacctgctccagaacgggttcggcagctacgacgtgttcgagaacaactgcgaggac 516 Query: 291 tttgcactctactgcaagac 310 || || |||||||||||||| Sbjct: 517 ttcgcgctctactgcaagac 536
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 435 atggccaccgtcacagccgggatgtactgtgccggtagatacatcaccgacat 487 |||||| ||||||| |||||||||||||| ||||| || |||||||||||||| Sbjct: 27386525 atggccgccgtcaccgccgggatgtactgcgccggcaggtacatcaccgacat 27386473 Score = 63.9 bits (32), Expect = 5e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 231 atgcacttgcttcaaaatgggtttggcaactacgacatattcgagaagaattgcgaggac 290 |||||| |||| || || ||||| |||| ||||||| | |||||||| || ||||||||| Sbjct: 27386732 atgcacctgctccagaacgggttcggcagctacgacgtgttcgagaacaactgcgaggac 27386673 Query: 291 tttgcactctactgcaagac 310 || || |||||||||||||| Sbjct: 27386672 ttcgcgctctactgcaagac 27386653
>dbj|AP004704.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0544G09 Length = 137481 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 435 atggccaccgtcacagccgggatgtactgtgccggtagatacatcaccgacat 487 |||||| ||||||| |||||||||||||| ||||| || |||||||||||||| Sbjct: 13320 atggccgccgtcaccgccgggatgtactgcgccggcaggtacatcaccgacat 13268 Score = 63.9 bits (32), Expect = 5e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 231 atgcacttgcttcaaaatgggtttggcaactacgacatattcgagaagaattgcgaggac 290 |||||| |||| || || ||||| |||| ||||||| | |||||||| || ||||||||| Sbjct: 13527 atgcacctgctccagaacgggttcggcagctacgacgtgttcgagaacaactgcgaggac 13468 Query: 291 tttgcactctactgcaagac 310 || || |||||||||||||| Sbjct: 13467 ttcgcgctctactgcaagac 13448
>dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1323_A06 Length = 95665 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 435 atggccaccgtcacagccgggatgtactgtgccggtagatacatcaccgacat 487 |||||| ||||||| |||||||||||||| ||||| || |||||||||||||| Sbjct: 88052 atggccgccgtcaccgccgggatgtactgcgccggcaggtacatcaccgacat 88000 Score = 63.9 bits (32), Expect = 5e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 231 atgcacttgcttcaaaatgggtttggcaactacgacatattcgagaagaattgcgaggac 290 |||||| |||| || || ||||| |||| ||||||| | |||||||| || ||||||||| Sbjct: 88259 atgcacctgctccagaacgggttcggcagctacgacgtgttcgagaacaactgcgaggac 88200 Query: 291 tttgcactctactgcaagac 310 || || |||||||||||||| Sbjct: 88199 ttcgcgctctactgcaagac 88180
>ref|NM_100005.2| Arabidopsis thaliana unknown protein AT1G01225 mRNA, complete cds Length = 1025 Score = 48.1 bits (24), Expect = 0.028 Identities = 57/68 (83%) Strand = Plus / Plus Query: 243 caaaatgggtttggcaactacgacatattcgagaagaattgcgaggactttgcactctac 302 ||||| || ||||||||||||||||| ||| |||| || || ||||| || || ||||| Sbjct: 483 caaaacggatttggcaactacgacattttcaagaacaactgtgaggatttcgcgctctat 542 Query: 303 tgcaagac 310 |||||||| Sbjct: 543 tgcaagac 550
>gb|BT024776.1| Arabidopsis thaliana At1g01225 mRNA, complete cds Length = 783 Score = 48.1 bits (24), Expect = 0.028 Identities = 57/68 (83%) Strand = Plus / Plus Query: 243 caaaatgggtttggcaactacgacatattcgagaagaattgcgaggactttgcactctac 302 ||||| || ||||||||||||||||| ||| |||| || || ||||| || || ||||| Sbjct: 406 caaaacggatttggcaactacgacattttcaagaacaactgtgaggatttcgcgctctat 465 Query: 303 tgcaagac 310 |||||||| Sbjct: 466 tgcaagac 473
>emb|BX818287.1|CNS0AAMT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL70ZH04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1021 Score = 48.1 bits (24), Expect = 0.028 Identities = 57/68 (83%) Strand = Plus / Plus Query: 243 caaaatgggtttggcaactacgacatattcgagaagaattgcgaggactttgcactctac 302 ||||| || ||||||||||||||||| ||| |||| || || ||||| || || ||||| Sbjct: 483 caaaacggatttggcaactacgacattttcaagaacaactgtgaggatttcgcgctctat 542 Query: 303 tgcaagac 310 |||||||| Sbjct: 543 tgcaagac 550
>gb|AY087072.1| Arabidopsis thaliana clone 31323 mRNA, complete sequence Length = 982 Score = 48.1 bits (24), Expect = 0.028 Identities = 57/68 (83%) Strand = Plus / Plus Query: 243 caaaatgggtttggcaactacgacatattcgagaagaattgcgaggactttgcactctac 302 ||||| || ||||||||||||||||| ||| |||| || || ||||| || || ||||| Sbjct: 450 caaaacggatttggcaactacgacattttcaagaacaactgtgaggatttcgcgctctat 509 Query: 303 tgcaagac 310 |||||||| Sbjct: 510 tgcaagac 517
>gb|AC023628.3|AC023628 Arabidopsis thaliana chromosome I BAC F6F3 genomic sequence, complete sequence Length = 104001 Score = 48.1 bits (24), Expect = 0.028 Identities = 57/68 (83%) Strand = Plus / Plus Query: 243 caaaatgggtttggcaactacgacatattcgagaagaattgcgaggactttgcactctac 302 ||||| || ||||||||||||||||| ||| |||| || || ||||| || || ||||| Sbjct: 37773 caaaacggatttggcaactacgacattttcaagaacaactgtgaggatttcgcgctctat 37832 Query: 303 tgcaagac 310 |||||||| Sbjct: 37833 tgcaagac 37840
>gb|AC132490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0570A02, complete sequence Length = 146541 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Minus Query: 274 agaagaattgcgaggactttgcactctactgcaagac 310 |||| ||||||||||||||||| | ||||||||||| Sbjct: 113060 agaacaattgcgaggactttgcgatatactgcaagac 113024
>gb|AC010947.6| Homo sapiens chromosome 18, clone RP11-25L3, complete sequence Length = 185470 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 381 ctggcagctcttctgtccacc 401 ||||||||||||||||||||| Sbjct: 166587 ctggcagctcttctgtccacc 166607
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Minus Query: 274 agaagaattgcgaggactttgcactctactgcaagac 310 |||| ||||||||||||||||| | ||||||||||| Sbjct: 14032983 agaacaattgcgaggactttgcgatatactgcaagac 14032947
>gb|AC009973.10| Homo sapiens BAC clone RP11-457P23 from 2, complete sequence Length = 202383 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 150 gcaattttccttgcaaaattt 170 ||||||||||||||||||||| Sbjct: 114732 gcaattttccttgcaaaattt 114752
>dbj|AK068459.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151C17, full insert sequence Length = 3464 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Minus Query: 274 agaagaattgcgaggactttgcactctactgcaagac 310 |||| ||||||||||||||||| | ||||||||||| Sbjct: 2617 agaacaattgcgaggactttgcgatatactgcaagac 2581
>gb|AC183678.2| Pan troglodytes BAC clone CH251-485O9 from chromosome 22, complete sequence Length = 209755 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 actggacttgtacctgtgga 328 |||||||||||||||||||| Sbjct: 201594 actggacttgtacctgtgga 201613
>gb|AY596539.1| Saccharum officinarum clone SCCCLR2C03C11, complete sequence Length = 1456 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 282 tgcgaggactttgcactctactgcaagactgg 313 |||||||||||||| | |||||||||||||| Sbjct: 747 tgcgaggactttgccatatactgcaagactgg 778
>gb|AC140286.3| Mus musculus BAC clone RP24-573E14 from chromosome 5, complete sequence Length = 164620 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 agactggacttgtacctgtggatg 330 ||||||| |||||||||||||||| Sbjct: 7666 agactggccttgtacctgtggatg 7689
>gb|AC113483.7| Mus musculus chromosome 1, clone RP23-343E12, complete sequence Length = 207188 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 actgcaagactggacttgta 320 |||||||||||||||||||| Sbjct: 20306 actgcaagactggacttgta 20325
>gb|AC114821.4| Mus musculus BAC clone RP23-72K1 from chromosome 1, complete sequence Length = 197978 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 tgtacctgtggatgaaccag 336 |||||||||||||||||||| Sbjct: 38082 tgtacctgtggatgaaccag 38101
>gb|AC122323.3| Mus musculus BAC clone RP23-326N21 from chromosome 8, complete sequence Length = 212949 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 cagctcttctgtccacccca 404 |||||||||||||||||||| Sbjct: 94042 cagctcttctgtccacccca 94023
>emb|Z99124.2|BSUB0021 Bacillus subtilis complete genome (section 21 of 21): from 4010730 to 4214630 Length = 203901 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 cagcaattttccttgcaaaa 167 |||||||||||||||||||| Sbjct: 158675 cagcaattttccttgcaaaa 158656
>gb|AC156549.8| Mus musculus chromosome 1, clone RP24-104O22, complete sequence Length = 164489 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 actgcaagactggacttgta 320 |||||||||||||||||||| Sbjct: 32378 actgcaagactggacttgta 32359
>emb|BX571981.5| Zebrafish DNA sequence from clone DKEY-31J3 in linkage group 14, complete sequence Length = 258091 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ttcccagactgtggttttca 61 |||||||||||||||||||| Sbjct: 220504 ttcccagactgtggttttca 220523
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 ccttggcaatggctccctct 123 |||||||||||||||||||| Sbjct: 1587001 ccttggcaatggctccctct 1586982
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 425 tccgctgggaatggccaccgtcac 448 |||||||||||||||||| ||||| Sbjct: 7729594 tccgctgggaatggccacggtcac 7729571
>emb|Z72503.1|CEC26C6 Caenorhabditis elegans Cosmid C26C6, complete sequence Length = 42472 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 caattttccttgcaaaattt 170 |||||||||||||||||||| Sbjct: 11179 caattttccttgcaaaattt 11198
>gb|AC120412.12| Mus musculus chromosome 5, clone RP24-447P14, complete sequence Length = 149454 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 agactggacttgtacctgtggatg 330 ||||||| |||||||||||||||| Sbjct: 25656 agactggccttgtacctgtggatg 25679
>gb|AC140553.3| Mus musculus BAC clone RP24-71M17 from 1, complete sequence Length = 217538 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 tgtacctgtggatgaaccag 336 |||||||||||||||||||| Sbjct: 159008 tgtacctgtggatgaaccag 159027
>emb|X91430.1|BSPX91430 Uncultured bacterium partial 16S rRNA gene (clone group A7hq) Length = 855 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 tcatcagagtgcccaacatt 43 |||||||||||||||||||| Sbjct: 619 tcatcagagtgcccaacatt 600
>gb|AC119202.6| Mus musculus chromosome 8, clone RP24-185N3, complete sequence Length = 159765 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 agtgccaccagcaattttcc 159 |||||||||||||||||||| Sbjct: 47591 agtgccaccagcaattttcc 47572
>dbj|D26185.1|BAC180K B. subtilis DNA, 180 kilobase region of replication origin Length = 180136 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 cagcaattttccttgcaaaa 167 |||||||||||||||||||| Sbjct: 18376 cagcaattttccttgcaaaa 18357 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,417,853 Number of Sequences: 3902068 Number of extensions: 3417853 Number of successful extensions: 56064 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55936 Number of HSP's gapped (non-prelim): 123 length of query: 499 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 477 effective length of database: 17,147,199,772 effective search space: 8179214291244 effective search space used: 8179214291244 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)