ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC131191.4| Mus musculus BAC clone RP24-464B16 from chromosom... 44 0.17
2gb|AC130714.3| Mus musculus BAC clone RP23-367L18 from chromosom... 44 0.17
3gb|AC138156.3| Carollia perspicillata clone 41M6, complete sequence 42 0.68
4gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold 42 0.68
5emb|Z99756.7|HS100N22 Human DNA sequence from clone RP1-100N22 o... 40 2.7
6gb|AC099050.2| Homo sapiens chromosome 3 clone RP11-413B21, comp... 40 2.7
7gb|AC013268.5| Homo sapiens BAC clone RP11-322F4 from 2, complet... 40 2.7
8gb|AC154646.2| Mus musculus BAC clone RP23-283B12 from chromosom... 40 2.7
9gb|AC104564.11| Homo sapiens chromosome 17, clone RP11-68I3, com... 40 2.7

>gb|AC131191.4| Mus musculus BAC clone RP24-464B16 from chromosome 18, complete
             sequence
          Length = 136832

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 88    ctccctcccttcactcccctcc 109
             ||||||||||||||||||||||
Sbjct: 56079 ctccctcccttcactcccctcc 56058



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>gb|AC130714.3| Mus musculus BAC clone RP23-367L18 from chromosome 18, complete sequence
          Length = 193184

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 88     ctccctcccttcactcccctcc 109
              ||||||||||||||||||||||
Sbjct: 161518 ctccctcccttcactcccctcc 161497



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>gb|AC138156.3| Carollia perspicillata clone 41M6, complete sequence
          Length = 123894

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 89    tccctcccttcactcccctcc 109
             |||||||||||||||||||||
Sbjct: 72418 tccctcccttcactcccctcc 72438



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>gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold
          Length = 1501503

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 89    tccctcccttcactcccctcc 109
             |||||||||||||||||||||
Sbjct: 72418 tccctcccttcactcccctcc 72438



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>emb|Z99756.7|HS100N22 Human DNA sequence from clone RP1-100N22 on chromosome 22q13.31-13.33,
             complete sequence
          Length = 81961

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 29    cgagccggccggccacgcccacac 52
             ||||||||||||||| ||||||||
Sbjct: 68741 cgagccggccggccaggcccacac 68718



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>gb|AC099050.2| Homo sapiens chromosome 3 clone RP11-413B21, complete sequence
          Length = 174036

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 86    ttctccctcccttcactcccctcc 109
             |||||||| |||||||||||||||
Sbjct: 40429 ttctcccttccttcactcccctcc 40406



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>gb|AC013268.5| Homo sapiens BAC clone RP11-322F4 from 2, complete sequence
          Length = 206457

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     tccctcccttcactcccctc 108
              ||||||||||||||||||||
Sbjct: 169792 tccctcccttcactcccctc 169773



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>gb|AC154646.2| Mus musculus BAC clone RP23-283B12 from chromosome 14, complete
             sequence
          Length = 189102

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    ctttctccctcccttcactc 103
             ||||||||||||||||||||
Sbjct: 42483 ctttctccctcccttcactc 42502



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>gb|AC104564.11| Homo sapiens chromosome 17, clone RP11-68I3, complete sequence
          Length = 173058

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 84     ctttctccctcccttcactc 103
              ||||||||||||||||||||
Sbjct: 122347 ctttctccctcccttcactc 122366


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,530,688
Number of Sequences: 3902068
Number of extensions: 1530688
Number of successful extensions: 121885
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121815
Number of HSP's gapped (non-prelim): 70
length of query: 212
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 190
effective length of database: 17,147,199,772
effective search space: 3257967956680
effective search space used: 3257967956680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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