ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd1l23 |
|---|---|
| Clone Library Name | barley_pub |
>ARPC2_SCHPO (O14241) ARP2/3 complex 34 kDa subunit (p34-ARC)| Length = 317 Score = 43.9 bits (102), Expect = 3e-04 Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 1/121 (0%) Frame = +1 Query: 190 MILLQSPSRFILQILKDRVSSGDKGVDIDCHTVEFDDVRYHIQFSMRNPKVMVLSVALPL 369 M+ L + FI ++L +R SS + ID +FD V +HI K+++ S+++ Sbjct: 1 MLSLDYNNIFIYELLTERFSSENPS-SIDQVVTDFDGVTFHISTPEEKTKILI-SLSMK- 57 Query: 370 APPEAILYDGLPLGAIDAIKAAYGTVVQILDPPKDCFDLTMKINLTKLP-TDEEQRNVVL 546 PE + Y G +D +K YG V P+ ++ ++ I+L +LP TDEE+ + + Sbjct: 58 CYPELVNY-----GTLDLLKQIYGAYVH---EPEMGYNFSILIDLQQLPATDEEKEQLAM 109 Query: 547 T 549 + Sbjct: 110 S 110
>ARPC2_DROME (Q9VIM5) Probable actin-related protein 2/3 complex subunit 2| (ARP2/3 complex 34 kDa subunit) (p34-ARC) Length = 301 Score = 37.4 bits (85), Expect = 0.030 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 4/118 (3%) Frame = +1 Query: 190 MILLQSPSRFILQILKDRVSSGDKGV---DIDCHTVEFDDVRYHIQFSMRNPKVMVLSVA 360 MILL+ +R I + L + + G+ ID +FD V YHI + + +S++ Sbjct: 1 MILLEINNRIIEETLLVKYRNAQAGLKPESIDIRIADFDGVLYHISNVNGDKTKVRISIS 60 Query: 361 LPLAPPEAILYDGL-PLGAIDAIKAAYGTVVQILDPPKDCFDLTMKINLTKLPTDEEQ 531 L Y L GA + +K YG+ +L ++ +++++ INL ++P D EQ Sbjct: 61 LK-------FYKQLQEHGADELLKREYGS---LLTDTEEGYNVSVLINLEEIPEDCEQ 108
>ARPC2_ANOGA (Q7PVX8) Probable actin-related protein 2/3 complex subunit 2| (ARP2/3 complex 34 kDa subunit) (p34-ARC) Length = 304 Score = 34.3 bits (77), Expect = 0.25 Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 4/118 (3%) Frame = +1 Query: 190 MILLQSPSRFILQILKDRVSS---GDKGVDIDCHTVEFDDVRYHIQFSMRNPKVMVLSVA 360 MILL+ +R + + L + + G+K ID +FD V +HI + + S++ Sbjct: 1 MILLEINNRIVEETLTVKFKNAIAGNKAESIDVTVADFDGVLFHISNINGDKTKVRTSIS 60 Query: 361 LPLAPPEAILYDGL-PLGAIDAIKAAYGTVVQILDPPKDCFDLTMKINLTKLPTDEEQ 531 L Y L GA + +K YG +L P+D +++++ ++L +P + E+ Sbjct: 61 LK-------FYKQLQEHGADELLKREYG---DLLVAPEDGYNVSVLVDLENIPENWEE 108
>ARPC2_PONPY (Q5R5Z5) Actin-related protein 2/3 complex subunit 2 (ARP2/3| complex 34 kDa subunit) (p34-ARC) Length = 300 Score = 33.9 bits (76), Expect = 0.33 Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 4/117 (3%) Frame = +1 Query: 190 MILLQSPSRFILQILK---DRVSSGDKGVDIDCHTVEFDDVRYHIQFSMRNPKVMVLSVA 360 MILL+ +R I + L + ++G+K ++ +FD V YHI + +++S++ Sbjct: 1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60 Query: 361 LPLAPPEAILYDGLPL-GAIDAIKAAYGTVVQILDPPKDCFDLTMKINLTKLPTDEE 528 L Y L GA + +K YG+ L P+ +++++ +L LP ++ Sbjct: 61 LK-------FYKELQAHGADELLKRVYGS---FLVNPESGYNVSLLYDLENLPASKD 107
>ARPC2_HUMAN (O15144) Actin-related protein 2/3 complex subunit 2 (ARP2/3| complex 34 kDa subunit) (p34-ARC) Length = 300 Score = 33.9 bits (76), Expect = 0.33 Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 4/117 (3%) Frame = +1 Query: 190 MILLQSPSRFILQILK---DRVSSGDKGVDIDCHTVEFDDVRYHIQFSMRNPKVMVLSVA 360 MILL+ +R I + L + ++G+K ++ +FD V YHI + +++S++ Sbjct: 1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS 60 Query: 361 LPLAPPEAILYDGLPL-GAIDAIKAAYGTVVQILDPPKDCFDLTMKINLTKLPTDEE 528 L Y L GA + +K YG+ L P+ +++++ +L LP ++ Sbjct: 61 LK-------FYKELQAHGADELLKRVYGS---FLVNPESGYNVSLLYDLENLPASKD 107
>MUTA_MOUSE (P16332) Methylmalonyl-CoA mutase, mitochondrial precursor (EC| 5.4.99.2) (MCM) (Methylmalonyl-CoA isomerase) Length = 748 Score = 32.3 bits (72), Expect = 0.96 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 4/79 (5%) Frame = +1 Query: 235 KDRVSSGDKGVDIDCHTVEFDDVRYHIQFSMRNPKVM----VLSVALPLAPPEAILYDGL 402 KD + +G +G+ + D+ H + NP+V + VA+ IL+DG+ Sbjct: 122 KDNIKAGQQGLSVAF------DLATHRGYDSDNPRVRGDVGMAGVAIDTVEDTKILFDGI 175 Query: 403 PLGAIDAIKAAYGTVVQIL 459 PL + G V+ +L Sbjct: 176 PLEKMSVSMTMNGAVIPVL 194
>MUTA_MACFA (Q8HXX1) Methylmalonyl-CoA mutase, mitochondrial precursor (EC| 5.4.99.2) (MCM) (Methylmalonyl-CoA isomerase) Length = 750 Score = 32.3 bits (72), Expect = 0.96 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 4/79 (5%) Frame = +1 Query: 235 KDRVSSGDKGVDIDCHTVEFDDVRYHIQFSMRNPKVM----VLSVALPLAPPEAILYDGL 402 KD + +G +G+ + D+ H + NP+V + VA+ IL+DG+ Sbjct: 124 KDNIKAGQQGLSVAF------DLATHRGYDSDNPRVRGDVGMAGVAIDTVEDTKILFDGI 177 Query: 403 PLGAIDAIKAAYGTVVQIL 459 PL + G V+ +L Sbjct: 178 PLEKMSVSMTMNGAVIPVL 196
>MUTA_HUMAN (P22033) Methylmalonyl-CoA mutase, mitochondrial precursor (EC| 5.4.99.2) (MCM) (Methylmalonyl-CoA isomerase) Length = 750 Score = 32.3 bits (72), Expect = 0.96 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 4/79 (5%) Frame = +1 Query: 235 KDRVSSGDKGVDIDCHTVEFDDVRYHIQFSMRNPKVM----VLSVALPLAPPEAILYDGL 402 KD + +G +G+ + D+ H + NP+V + VA+ IL+DG+ Sbjct: 124 KDNIKAGQQGLSVAF------DLATHRGYDSDNPRVRGDVGMAGVAIDTVEDTKILFDGI 177 Query: 403 PLGAIDAIKAAYGTVVQIL 459 PL + G V+ +L Sbjct: 178 PLEKMSVSMTMNGAVIPVL 196
>NOL9_HUMAN (Q5SY16) Nucleolar protein 9| Length = 702 Score = 32.3 bits (72), Expect = 0.96 Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Frame = -1 Query: 180 SLLLRTSPARPRLPKSDRTGGERGASRWCG--RARWGLPSAVA 58 S LR ARP+L S R G+ RWCG R RW L A A Sbjct: 15 STWLRVRKARPQLILSRRPRRRLGSLRWCGRRRLRWRLLQAQA 57
>UVRC_PSEPK (Q88FJ7) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 607 Score = 31.2 bits (69), Expect = 2.1 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%) Frame = -1 Query: 204 LEQYHPPVSLLLRTSPARPRLPKSD----RTGGERGASRWCGRARWGLPSAVALR 52 ++++ PP ++LLR + P + SD R G RGA + GR PSA A+R Sbjct: 85 IKEWRPPYNILLRDDKSYPYVFLSDGEFPRLGIHRGAKKAKGRYFGPYPSAGAIR 139
>MUTA_PIG (Q8MI68) Methylmalonyl-CoA mutase, mitochondrial precursor (EC| 5.4.99.2) (MCM) (Methylmalonyl-CoA isomerase) Length = 750 Score = 30.8 bits (68), Expect = 2.8 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 4/79 (5%) Frame = +1 Query: 235 KDRVSSGDKGVDIDCHTVEFDDVRYHIQFSMRNPKVM----VLSVALPLAPPEAILYDGL 402 KD + +G +G+ + D+ H + NP+V + VA+ IL+DG+ Sbjct: 124 KDIIKAGQQGLSVAF------DLATHRGYDSDNPRVHGDVGMAGVAIDTVEDTKILFDGI 177 Query: 403 PLGAIDAIKAAYGTVVQIL 459 PL + G V+ +L Sbjct: 178 PLEKMSVSMTMNGAVIPVL 196
>SLAP1_CLOTM (Q06852) Cell surface glycoprotein 1 precursor (Outer layer protein| B) (S-layer protein 1) Length = 1664 Score = 29.6 bits (65), Expect = 6.2 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = -3 Query: 232 GSGV*TWMGTGAVSSSRIPSPANQPRSTP-PTEI 134 GSG G G V +S P+P ++P STP PTEI Sbjct: 1402 GSGGGGGGGGGTVPTSPTPTPTSKPTSTPAPTEI 1435
>HUTH_BACSK (Q5WAZ6) Histidine ammonia-lyase (EC 4.3.1.3) (Histidase)| Length = 500 Score = 29.6 bits (65), Expect = 6.2 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 10/85 (11%) Frame = +1 Query: 340 VMVLSVALPLAPPEAILYDGLPLG----AIDAIKAAYGTVVQILDPPKDCFDLT------ 489 V++ +L L EAILY G+ +G I+ I+A+ V +I+ + + + Sbjct: 2 VILTGRSLTLDDMEAILYKGVKVGLSQSCINEIEASRRAVEKIVQDGRTVYGINTGFGKF 61 Query: 490 MKINLTKLPTDEEQRNVVLTQIASV 564 + + T+E QRN++L+ V Sbjct: 62 SDVQIAAADTEELQRNLILSHACGV 86
>ABLM3_MOUSE (Q69ZX8) Actin-binding LIM protein 3 (Actin-binding LIM protein| family member 3) (abLIM3) Length = 682 Score = 29.6 bits (65), Expect = 6.2 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%) Frame = -1 Query: 210 WGLEQYHP-PVSLLLRTSPARPRLPKS-DRTGGERGASR 100 WG+ +Y P LLL T+ R RLPK DRT ER S+ Sbjct: 612 WGMREYKIYPYELLLVTTRGRNRLPKDVDRTRLERHLSQ 650
>ABLM3_HUMAN (O94929) Actin-binding LIM protein 3 (Actin-binding LIM protein| family member 3) (abLIM3) Length = 683 Score = 29.6 bits (65), Expect = 6.2 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%) Frame = -1 Query: 210 WGLEQYHP-PVSLLLRTSPARPRLPKS-DRTGGERGASR 100 WG+ +Y P LLL T+ R RLPK DRT ER S+ Sbjct: 613 WGMREYKIYPYELLLVTTRGRNRLPKDVDRTRLERHLSQ 651
>BHLH3_RAT (O35779) Class B basic helix-loop-helix protein 3 (bHLHB3)| (Enhancer-of-split and hairy-related protein 1) (SHARP-1) Length = 410 Score = 29.3 bits (64), Expect = 8.1 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +1 Query: 370 APPEAILYDGLPLGAIDAIKAAYGTVVQILDPPKD 474 A P +LY G+P A A AA+ + +L PP + Sbjct: 323 AAPFPLLYPGIPAAAAAAAAAAFPCLSSVLSPPPE 357
>BHLH3_MOUSE (Q99PV5) Class B basic helix-loop-helix protein 3 (bHLHB3)| (Differentially expressed in chondrocytes protein 2) (mDEC2) Length = 410 Score = 29.3 bits (64), Expect = 8.1 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +1 Query: 370 APPEAILYDGLPLGAIDAIKAAYGTVVQILDPPKD 474 A P +LY G+P A A AA+ + +L PP + Sbjct: 323 AAPFPLLYPGIPAAAAAAAAAAFPCLSSVLSPPPE 357 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,032,844 Number of Sequences: 219361 Number of extensions: 1808922 Number of successful extensions: 5658 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5422 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5649 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
