ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd1l23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_192422.1| Oryza sativa (japonica cultivar-group), predic... 408 e-111
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 252 1e-63
3dbj|AP003709.2| Oryza sativa (japonica cultivar-group) genomic D... 252 1e-63
4gb|AY111625.1| Zea mays CL55281_1 mRNA sequence 198 1e-47
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 50 0.008
6gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa... 50 0.008
7gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 genom... 50 0.008
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
9gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 42 1.9
10emb|BX936408.10| Zebrafish DNA sequence from clone CH211-195A15 ... 42 1.9
11emb|AL161773.21| Human DNA sequence from clone RP11-212E4 on chr... 42 1.9
12gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 42 1.9
13emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.9
14emb|BX640428.1| Bordetella parapertussis strain 12822, complete ... 42 1.9
15emb|BX640418.1| Bordetella pertussis strain Tohama I, complete g... 42 1.9
16emb|AL627222.10| Mouse DNA sequence from clone RP23-265A5 on chr... 42 1.9
17gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 42 1.9
18emb|BX569787.4| Zebrafish DNA sequence from clone CH211-208H1 in... 42 1.9
19emb|BX936463.13| Zebrafish DNA sequence from clone DKEY-4G17 in ... 42 1.9
20emb|BX511259.14| Zebrafish DNA sequence from clone CH211-125E6 i... 42 1.9
21gb|AC087181.9| Oryza sativa (japonica cultivar-group) chromosome... 40 7.7
22ref|XM_974851.1| PREDICTED: Mus musculus hypothetical protein LO... 40 7.7
23ref|XM_546571.2| PREDICTED: Canis familiaris similar to kinesin ... 40 7.7
24ref|XM_731623.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 7.7
25emb|AJ248285.1|CNSPAX03 Pyrococcus abyssi complete genome; segme... 40 7.7
26emb|CR925752.5| Mouse DNA sequence from clone RP24-106O24 on chr... 40 7.7
27gb|CP000249.1| Frankia sp. CcI3, complete genome 40 7.7
28dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
29dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 7.7
30dbj|AP003299.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
31dbj|AP003290.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
32gb|U62317.2|HUB384D8 Homo sapiens chromosome 22q13 BAC clone CIT... 40 7.7
33gb|AC165167.3| Mus musculus BAC clone RP23-27M6 from chromosome ... 40 7.7
34gb|BC089042.1| Homo sapiens protein tyrosine phosphatase, non-re... 40 7.7
35gb|AC134929.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.7

>ref|NM_192422.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1287

 Score =  408 bits (206), Expect = e-111
 Identities = 287/314 (91%)
 Strand = Plus / Plus

                                                                       
Query: 253 ggcgacaagggcgtggacatcgattgccacacggtggagttcgacgatgtgcggtatcat 312
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 331 ggcgacaagggcgtggacatcgattgccacacggtggaattcgacgatgtgcggtatcat 390

                                                                       
Query: 313 atacagttttcaatgaggaatccaaaggtaatggtgctatcagtggcattgcccctcgca 372
           || |||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 391 atccagttttctatgaggaatccaaaggtaatggtgctatcagtagcattgcccctccca 450

                                                                       
Query: 373 ccacctgaggctattctctacgacgggcttcctcttggtgctattgatgctataaaggcg 432
           || |||||||| || || || || || ||||| ||||||||||| || || |||||||| 
Sbjct: 451 cctcctgaggccatgctatatgatggacttccacttggtgctatcgaggcaataaaggca 510

                                                                       
Query: 433 gcttatgggacagtggttcaaattcttgatcctccaaaggattgctttgatctcacaatg 492
           ||||||||  |||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 511 gcttatggaccagtcgttcaaattcttgatcctccaaaggatggctttgatctcacaatg 570

                                                                       
Query: 493 aagataaacttaacaaagcttccgacagatgaagagcagcggaatgttgtcttgacacaa 552
           ||||||||||| |||||||||||| |||||||||||||  |||||| ||||||||| |||
Sbjct: 571 aagataaacttgacaaagcttccgccagatgaagagcaaaggaatgctgtcttgactcaa 630

                         
Query: 553 attgcatctgtgag 566
           ||||||||||||||
Sbjct: 631 attgcatctgtgag 644



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                      
Query: 188 ggatgatactgctccagtccccatccaggtttatactccagatcctgaaggatcgcgtc 246
           |||||||||| |||||||| || ||||||||  | |||||||||||| |||||||||||
Sbjct: 183 ggatgatacttctccagtcgccgtccaggttcctgctccagatcctgcaggatcgcgtc 241



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  252 bits (127), Expect = 1e-63
 Identities = 190/211 (90%)
 Strand = Plus / Plus

                                                                            
Query: 316      cagttttcaatgaggaatccaaaggtaatggtgctatcagtggcattgcccctcgcacca 375
                |||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| 
Sbjct: 26521807 cagttttctatgaggaatccaaaggtaatggtgctatcagtagcattgcccctcccacct 26521866

                                                                            
Query: 376      cctgaggctattctctacgacgggcttcctcttggtgctattgatgctataaaggcggct 435
                |||||||| || || || || || ||||| ||||||||||| || || |||||||| |||
Sbjct: 26521867 cctgaggccatgctatatgatggacttccacttggtgctatcgaggcaataaaggcagct 26521926

                                                                            
Query: 436      tatgggacagtggttcaaattcttgatcctccaaaggattgctttgatctcacaatgaag 495
                |||||  |||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 26521927 tatggaccagtcgttcaaattcttgatcctccaaaggatggctttgatctcacaatgaag 26521986

                                               
Query: 496      ataaacttaacaaagcttccgacagatgaag 526
                |||||||| |||||||||||| |||||||||
Sbjct: 26521987 ataaacttgacaaagcttccgccagatgaag 26522017



 Score =  115 bits (58), Expect = 2e-22
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                            
Query: 253      ggcgacaagggcgtggacatcgattgccacacggtggagttcgacgatgtgcggtatcat 312
                |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 26521114 ggcgacaagggcgtggacatcgattgccacacggtggaattcgacgatgtgcggtatcat 26521173

                  
Query: 313      at 314
                ||
Sbjct: 26521174 at 26521175



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                           
Query: 188      ggatgatactgctccagtccccatccaggtttatactccagatcctgaaggatcgcgtc 246
                |||||||||| |||||||| || ||||||||  | |||||||||||| |||||||||||
Sbjct: 26520966 ggatgatacttctccagtcgccgtccaggttcctgctccagatcctgcaggatcgcgtc 26521024



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                  
Query: 533      ggaatgttgtcttgacacaaattgcatctgtgag 566
                |||||| ||||||||| |||||||||||||||||
Sbjct: 26522560 ggaatgctgtcttgactcaaattgcatctgtgag 26522593



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 173      agaagggatacgggaggatgatac 196
                |||||||||| |||||||||||||
Sbjct: 33651661 agaagggataagggaggatgatac 33651684



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>dbj|AP003709.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBb0006H05
          Length = 154821

 Score =  252 bits (127), Expect = 1e-63
 Identities = 190/211 (90%)
 Strand = Plus / Plus

                                                                          
Query: 316    cagttttcaatgaggaatccaaaggtaatggtgctatcagtggcattgcccctcgcacca 375
              |||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| 
Sbjct: 130426 cagttttctatgaggaatccaaaggtaatggtgctatcagtagcattgcccctcccacct 130485

                                                                          
Query: 376    cctgaggctattctctacgacgggcttcctcttggtgctattgatgctataaaggcggct 435
              |||||||| || || || || || ||||| ||||||||||| || || |||||||| |||
Sbjct: 130486 cctgaggccatgctatatgatggacttccacttggtgctatcgaggcaataaaggcagct 130545

                                                                          
Query: 436    tatgggacagtggttcaaattcttgatcctccaaaggattgctttgatctcacaatgaag 495
              |||||  |||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 130546 tatggaccagtcgttcaaattcttgatcctccaaaggatggctttgatctcacaatgaag 130605

                                             
Query: 496    ataaacttaacaaagcttccgacagatgaag 526
              |||||||| |||||||||||| |||||||||
Sbjct: 130606 ataaacttgacaaagcttccgccagatgaag 130636



 Score =  115 bits (58), Expect = 2e-22
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                          
Query: 253    ggcgacaagggcgtggacatcgattgccacacggtggagttcgacgatgtgcggtatcat 312
              |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 129733 ggcgacaagggcgtggacatcgattgccacacggtggaattcgacgatgtgcggtatcat 129792

                
Query: 313    at 314
              ||
Sbjct: 129793 at 129794



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                         
Query: 188    ggatgatactgctccagtccccatccaggtttatactccagatcctgaaggatcgcgtc 246
              |||||||||| |||||||| || ||||||||  | |||||||||||| |||||||||||
Sbjct: 129585 ggatgatacttctccagtcgccgtccaggttcctgctccagatcctgcaggatcgcgtc 129643



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                
Query: 533    ggaatgttgtcttgacacaaattgcatctgtgag 566
              |||||| ||||||||| |||||||||||||||||
Sbjct: 131179 ggaatgctgtcttgactcaaattgcatctgtgag 131212



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>gb|AY111625.1| Zea mays CL55281_1 mRNA sequence
          Length = 637

 Score =  198 bits (100), Expect = 1e-47
 Identities = 223/264 (84%)
 Strand = Plus / Plus

                                                                       
Query: 253 ggcgacaagggcgtggacatcgattgccacacggtggagttcgacgatgtgcggtatcat 312
           ||||| |||||| ||||||| || || |||||||| |||||||| ||||| |||||||||
Sbjct: 368 ggcgagaagggcatggacattgactgtcacacggtagagttcgatgatgtccggtatcat 427

                                                                       
Query: 313 atacagttttcaatgaggaatccaaaggtaatggtgctatcagtggcattgcccctcgca 372
           || |||||||| |||||||||||||||||||||||| | ||||| || ||||| ||  ||
Sbjct: 428 atccagttttctatgaggaatccaaaggtaatggtgttgtcagttgctttgcctctgcca 487

                                                                       
Query: 373 ccacctgaggctattctctacgacgggcttcctcttggtgctattgatgctataaaggcg 432
           || ||||| || ||||| || || ||||| || || ||||| ||||| |||||||| || 
Sbjct: 488 cctcctgaagcgattctgtatgatgggctaccactaggtgccattgaagctataaaagca 547

                                                                       
Query: 433 gcttatgggacagtggttcaaattcttgatcctccaaaggattgctttgatctcacaatg 492
           || |||||| |||| || || ||||||||||||||||||||  | |||||||||||||||
Sbjct: 548 gcatatgggccagttgtgcagattcttgatcctccaaaggacgggtttgatctcacaatg 607

                                   
Query: 493 aagataaacttaacaaagcttccg 516
           |||||||| || ||||| ||||||
Sbjct: 608 aagataaatttgacaaaacttccg 631



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 189 gatgatactgctccagtccccatccaggtt 218
           |||||||||||||||||||||||| |||||
Sbjct: 304 gatgatactgctccagtccccatcgaggtt 333



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 73       aagcccccagcgagcgcggccgcaccacc 101
                ||||||||| |||||||||||||||||||
Sbjct: 29892907 aagcccccaccgagcgcggccgcaccacc 29892879



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 112      tctttctccacccgttcgat 131
                ||||||||||||||||||||
Sbjct: 28330969 tctttctccacccgttcgat 28330988



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>gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa0084L17, complete
              sequence
          Length = 159661

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                           
Query: 73     aagcccccagcgagcgcggccgcaccacc 101
              ||||||||| |||||||||||||||||||
Sbjct: 117699 aagcccccaccgagcgcggccgcaccacc 117727



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>gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 genomic sequence, complete
             sequence
          Length = 139946

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 73    aagcccccagcgagcgcggccgcaccacc 101
             ||||||||| |||||||||||||||||||
Sbjct: 58848 aagcccccaccgagcgcggccgcaccacc 58820



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 73       aagcccccagcgagcgcggccgcaccacc 101
                ||||||||| |||||||||||||||||||
Sbjct: 29984329 aagcccccaccgagcgcggccgcaccacc 29984301



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 112      tctttctccacccgttcgat 131
                ||||||||||||||||||||
Sbjct: 28422293 tctttctccacccgttcgat 28422312



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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 247     tccagcggcgacaagggcgtggaca 271
               ||||||||||||||| |||||||||
Sbjct: 1951646 tccagcggcgacaagcgcgtggaca 1951622



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>emb|BX936408.10| Zebrafish DNA sequence from clone CH211-195A15 in linkage group 17,
              complete sequence
          Length = 198387

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 536    atgttgtcttgacacaaattg 556
              |||||||||||||||||||||
Sbjct: 131536 atgttgtcttgacacaaattg 131516



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>emb|AL161773.21| Human DNA sequence from clone RP11-212E4 on chromosome 13 Contains the
             5' end of the COL4A1 gene for collagen type IV alpha 1,
             the 5' end of the COL4A2 gene for collagen type IV alpha 2
             and three CpG islands, complete sequence
          Length = 154195

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 487   acaatgaagataaacttaacaaagc 511
             |||||||||||||||||| ||||||
Sbjct: 64601 acaatgaagataaacttaccaaagc 64577



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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 82     gcgagcgcggccgcaccaccg 102
              |||||||||||||||||||||
Sbjct: 302356 gcgagcgcggccgcaccaccg 302336



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>emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete genome; segment 11/16
          Length = 349442

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 51     tgcgcagcgccaccgccgacg 71
              |||||||||||||||||||||
Sbjct: 147110 tgcgcagcgccaccgccgacg 147090



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>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14
          Length = 348525

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 51    tgcgcagcgccaccgccgacg 71
             |||||||||||||||||||||
Sbjct: 91008 tgcgcagcgccaccgccgacg 91028



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>emb|BX640418.1| Bordetella pertussis strain Tohama I, complete genome; segment 8/12
          Length = 349346

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 51    tgcgcagcgccaccgccgacg 71
             |||||||||||||||||||||
Sbjct: 22718 tgcgcagcgccaccgccgacg 22698



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>emb|AL627222.10| Mouse DNA sequence from clone RP23-265A5 on chromosome 11 Contains a
             novel gene, the Tac4 gene for tachykinin, the Myst2 gene
             for MYST histone acetyltransferase 2,  two novel genes,
             the 5' end of the gene for the likely ortholog of H.
             sapiens C/EBP-induced protein (5730593F17Rik) and a CpG
             island, complete sequence
          Length = 185645

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 221   tactccagatcctgaaggatc 241
             |||||||||||||||||||||
Sbjct: 68674 tactccagatcctgaaggatc 68694



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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 369    cgcaccacctgaggctattct 389
              |||||||||||||||||||||
Sbjct: 437211 cgcaccacctgaggctattct 437191



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>emb|BX569787.4| Zebrafish DNA sequence from clone CH211-208H1 in linkage group 6,
              complete sequence
          Length = 214158

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 536    atgttgtcttgacacaaattg 556
              |||||||||||||||||||||
Sbjct: 123843 atgttgtcttgacacaaattg 123823



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>emb|BX936463.13| Zebrafish DNA sequence from clone DKEY-4G17 in linkage group 17,
             complete sequence
          Length = 232846

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 536   atgttgtcttgacacaaattg 556
             |||||||||||||||||||||
Sbjct: 71738 atgttgtcttgacacaaattg 71758



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>emb|BX511259.14| Zebrafish DNA sequence from clone CH211-125E6 in linkage group 9,
              complete sequence
          Length = 182412

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 536    atgttgtcttgacacaaattg 556
              |||||||||||||||||||||
Sbjct: 151844 atgttgtcttgacacaaattg 151864



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>gb|AC087181.9| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0018H01
             map R1538, complete sequence
          Length = 142712

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   tctttctccacccgttcgat 131
             ||||||||||||||||||||
Sbjct: 82073 tctttctccacccgttcgat 82054



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>ref|XM_974851.1| PREDICTED: Mus musculus hypothetical protein LOC665147 (LOC665147),
           mRNA
          Length = 1053

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 83  cgagcgcggccgcaccaccg 102
           ||||||||||||||||||||
Sbjct: 749 cgagcgcggccgcaccaccg 730



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>ref|XM_546571.2| PREDICTED: Canis familiaris similar to kinesin family member 1C
            (LOC489453), mRNA
          Length = 4189

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   ggaagcccccagcgagcgcg 90
            ||||||||||||||||||||
Sbjct: 2961 ggaagcccccagcgagcgcg 2980



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>ref|XM_731623.1| Plasmodium chabaudi chabaudi hypothetical protein (PC300286.00.0)
           partial mRNA
          Length = 846

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 487 acaatgaagataaacttaacaaag 510
           ||||||||||||||||||| ||||
Sbjct: 161 acaatgaagataaacttaaaaaag 184



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>emb|AJ248285.1|CNSPAX03 Pyrococcus abyssi complete genome; segment 3/6
          Length = 307120

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 367   ctcgcaccacctgaggctattctc 390
             ||||| ||||||||||||||||||
Sbjct: 28071 ctcgctccacctgaggctattctc 28094



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>emb|CR925752.5| Mouse DNA sequence from clone RP24-106O24 on chromosome 4, complete
             sequence
          Length = 103739

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    cgagcgcggccgcaccaccg 102
             ||||||||||||||||||||
Sbjct: 92621 cgagcgcggccgcaccaccg 92602



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     cagcgccaccgccgacggaa 74
              ||||||||||||||||||||
Sbjct: 979108 cagcgccaccgccgacggaa 979127



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 110      cctctttctccacccgttcgatca 133
                |||||||||||||||| |||||||
Sbjct: 28830366 cctctttctccacccgatcgatca 28830343



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 83      cgagcgcggccgcaccaccg 102
               ||||||||||||||||||||
Sbjct: 2178507 cgagcgcggccgcaccaccg 2178488



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>dbj|AP003299.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0699H05
          Length = 144850

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 173  agaagggatacgggaggatgatac 196
            |||||||||| |||||||||||||
Sbjct: 4731 agaagggataagggaggatgatac 4754



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>dbj|AP003290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0684C02
          Length = 80086

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 173   agaagggatacgggaggatgatac 196
             |||||||||| |||||||||||||
Sbjct: 66533 agaagggataagggaggatgatac 66556



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>gb|U62317.2|HUB384D8 Homo sapiens chromosome 22q13 BAC clone CIT987SK-384D8 complete
             sequence
          Length = 139934

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   gcctctttctccacccgttc 128
             ||||||||||||||||||||
Sbjct: 78996 gcctctttctccacccgttc 79015



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>gb|AC165167.3| Mus musculus BAC clone RP23-27M6 from chromosome 17, complete sequence
          Length = 235787

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 411   tgctattgatgctataaagg 430
             ||||||||||||||||||||
Sbjct: 27564 tgctattgatgctataaagg 27583



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>gb|BC089042.1| Homo sapiens protein tyrosine phosphatase, non-receptor type 23,
          mRNA (cDNA clone MGC:99484 IMAGE:6579163), complete cds
          Length = 5215

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  ttcggcacgaggggccggcg 20
          ||||||||||||||||||||
Sbjct: 1  ttcggcacgaggggccggcg 20



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>gb|AC134929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0035N21, complete sequence
          Length = 128331

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 110   cctctttctccacccgttcgatca 133
             |||||||||||||||| |||||||
Sbjct: 43101 cctctttctccacccgatcgatca 43124


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,826,188
Number of Sequences: 3902068
Number of extensions: 3826188
Number of successful extensions: 71541
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71008
Number of HSP's gapped (non-prelim): 533
length of query: 567
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 544
effective length of database: 17,143,297,704
effective search space: 9325953950976
effective search space used: 9325953950976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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