ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd1l22 |
|---|---|
| Clone Library Name | barley_pub |
>FILA_MOUSE (P11088) Filaggrin (Fragment)| Length = 336 Score = 35.0 bits (79), Expect = 0.097 Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 11/74 (14%) Frame = +3 Query: 198 QGHEVEHQHQGRGGLPRLRHREQ-----GHWPGHQ------ALPRPVPPCASGAVQPGLP 344 +GH+ +HQHQ P HR+Q GH HQ A PR S + Sbjct: 176 RGHQHQHQHQHEHEQPESGHRQQQSSGRGHQGAHQEQGRDSARPRGSNQGHSSSRHQADS 235 Query: 345 GRVGAVDGEQGRGQ 386 RV A G GRGQ Sbjct: 236 PRVSARSGSGGRGQ 249
>ACSA_DROME (Q9VP61) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Acetate--CoA| ligase) (Acyl-activating enzyme) (Acetyl-CoA synthetase) (ACS) (AceCS) Length = 670 Score = 32.7 bits (73), Expect = 0.48 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +1 Query: 274 GQAIKHSLGQSHPVRLVPYNPDFLDESVLWTESRD 378 G +++ + SH R+ P PD ++E + WT+ RD Sbjct: 221 GHSVEKCIVVSHLKRVTPCQPDHVEEEIPWTDDRD 255
>SPD2_NEPCL (P46804) Spidroin 2 (Dragline silk fibroin 2) (Fragment)| Length = 627 Score = 32.3 bits (72), Expect = 0.63 Identities = 19/51 (37%), Positives = 23/51 (45%) Frame = +3 Query: 225 QGRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQPGLPGRVGAVDGEQG 377 QG GG + G+ PG Q L P A+ A PG G G G+QG Sbjct: 218 QGPGGYGPGQQGPGGYGPGQQGLSGPGSAAAAAAAGPGQQGPGGYGPGQQG 268
>SYK_HAEDU (Q7VLU5) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 498 Score = 32.0 bits (71), Expect = 0.82 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 11/83 (13%) Frame = +1 Query: 223 IKDEEGYPAFAIVNKATGQAIKHSLGQ-----SHPVRLVPY------NPDFLDESVLWTE 369 I+ ++ + A+VN + +H L Q +HP + P NP+ D L+ Sbjct: 354 IEVQKSWGLGAVVNAIFEEVAEHQLIQPTFLMAHPAEISPLARRNDENPEVTDRFELFIG 413 Query: 370 SRDVGNGFRCVRMVNNIYLNFDA 438 R++GNGF + + FDA Sbjct: 414 GREIGNGFSELNDAEDQAARFDA 436
>FOXA2_BRARE (Q07342) Forkhead box protein A2 (Axial protein)| Length = 409 Score = 31.6 bits (70), Expect = 1.1 Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 3/125 (2%) Frame = +1 Query: 28 YGMSQVNVDGNCGGRPMPPQPTVKIYCRANPNYA-MSVRNGKVVLAPAN--PKDDYQHWI 198 YG S +N R P+ + Y A P Y+ +S+ + +P+ + WI Sbjct: 129 YGQSNIN-------RSRDPKTYRRSYTHAKPPYSYISLITMAIQQSPSKMLTLSEIYQWI 181 Query: 199 KDMRWSTSIKDEEGYPAFAIVNKATGQAIKHSLGQSHPVRLVPYNPDFLDESVLWTESRD 378 D+ +P + + +I+HSL + VP +PD + WT D Sbjct: 182 MDL-----------FPFYRQNQQRWQNSIRHSLSFNDCFLKVPRSPDKPGKGSFWTLHPD 230 Query: 379 VGNGF 393 GN F Sbjct: 231 SGNMF 235
>ELN_RAT (Q99372) Elastin precursor (Tropoelastin)| Length = 870 Score = 31.2 bits (69), Expect = 1.4 Identities = 22/50 (44%), Positives = 22/50 (44%) Frame = +3 Query: 228 GRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQPGLPGRVGAVDGEQG 377 G GG L G PG ALP VP GAV LPG V V G G Sbjct: 490 GAGGAGTLGGLVPGAVPG--ALPGAVPGALPGAVPGALPGAVPGVPGTGG 537
>HNF3B_ORYLA (O42097) Hepatocyte nuclear factor 3-beta (HNF-3B) (Me-HNF3B)| (Forkhead box protein A2) Length = 415 Score = 30.8 bits (68), Expect = 1.8 Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 3/125 (2%) Frame = +1 Query: 28 YGMSQVNVDGNCGGRPMPPQPTVKIYCRANPNYA-MSVRNGKVVLAPANPKD--DYQHWI 198 YG S +N R P+ + Y A P Y+ +S+ + +P+ + WI Sbjct: 128 YGQSNIN-------RSRDPKTYRRSYTHAKPPYSYISLITMAIQQSPSKMLTLAEIYQWI 180 Query: 199 KDMRWSTSIKDEEGYPAFAIVNKATGQAIKHSLGQSHPVRLVPYNPDFLDESVLWTESRD 378 D+ +P + + +I+HSL + VP +PD + WT D Sbjct: 181 MDL-----------FPFYRQNQQRWQNSIRHSLSFNDCFLKVPRSPDKPGKGSFWTLHPD 229 Query: 379 VGNGF 393 GN F Sbjct: 230 SGNMF 234
>CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodpasture antigen)| Length = 1670 Score = 30.8 bits (68), Expect = 1.8 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = -3 Query: 376 PCSPSTAPTRPGSPGCTAPDAQGGTGRGSA*WPG 275 P PS P PGSPG + P +G G WPG Sbjct: 370 PQGPSGPPGVPGSPGSSRPGLRGAPG-----WPG 398
>IF2_LEIXX (Q6AG49) Translation initiation factor IF-2| Length = 916 Score = 30.8 bits (68), Expect = 1.8 Identities = 18/39 (46%), Positives = 19/39 (48%) Frame = -3 Query: 391 SRCPRPCSPSTAPTRPGSPGCTAPDAQGGTGRGSA*WPG 275 S PRP AP RPGSP AP GG +G PG Sbjct: 195 SNIPRP-----APPRPGSPRIGAPRPGGGQRQGGGGRPG 228
>FRAT1_MOUSE (P70339) Proto-oncogene FRAT1 (Frequently rearranged in advanced| T-cell lymphomas) (Frat-1) Length = 274 Score = 30.4 bits (67), Expect = 2.4 Identities = 20/39 (51%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = +3 Query: 18 PGAVRHVAGERRRQLRRSAD---AAAAYGEDLLPRQPQL 125 PGAVR V GER R RSA A + G LP+QP L Sbjct: 104 PGAVRCVLGERGRVRGRSAPYCVAEISPGASALPQQPGL 142
>IF2_MYCTU (P65131) Translation initiation factor IF-2| Length = 900 Score = 30.4 bits (67), Expect = 2.4 Identities = 16/33 (48%), Positives = 19/33 (57%) Frame = -3 Query: 391 SRCPRPCSPSTAPTRPGSPGCTAPDAQGGTGRG 293 +R PRP +P RPG+PG DA GG RG Sbjct: 203 ARPPRPGAPRPGG-RPGAPGAGRSDAGGGNYRG 234
>IF2_MYCBO (P65132) Translation initiation factor IF-2| Length = 900 Score = 30.4 bits (67), Expect = 2.4 Identities = 16/33 (48%), Positives = 19/33 (57%) Frame = -3 Query: 391 SRCPRPCSPSTAPTRPGSPGCTAPDAQGGTGRG 293 +R PRP +P RPG+PG DA GG RG Sbjct: 203 ARPPRPGAPRPGG-RPGAPGAGRSDAGGGNYRG 234
>SPR2F_MOUSE (O70557) Small proline-rich protein 2F| Length = 76 Score = 30.0 bits (66), Expect = 3.1 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = -3 Query: 388 RCPRPCSPSTAPTRPGSPGCTAP 320 +CP PCSPS P P C P Sbjct: 22 KCPEPCSPSVCPEPCPPPKCPEP 44
>YNM4_YEAST (P53919) Hypothetical 54.9 kDa protein in SPC98-TOM70 intergenic| region Length = 492 Score = 30.0 bits (66), Expect = 3.1 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = +1 Query: 16 PPVPYGMSQVNVDGNCGGRPMPPQPTVKIYCRANPNYAMSVRNGKVVLAPANPKDDYQH 192 PP+PYG+ +N N PM QP + + N N+ + +++L + YQH Sbjct: 430 PPLPYGVPPMNQMQN----PMYIQPPPQAPPQGNGNFQQVMELHQILLQQQQQQHQYQH 484
>COL2_CAEEL (P17656) Cuticle collagen 2 precursor| Length = 301 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Frame = -3 Query: 382 PRPCSPSTAPTRPGSPGCT-APDAQGGTGRGSA 287 P P P +P +PG PG AP A G G+G++ Sbjct: 104 PGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGAS 136
>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor| Length = 1466 Score = 30.0 bits (66), Expect = 3.1 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = +3 Query: 198 QGHEVEHQHQGRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQ--PGLPGRVGAVDGE 371 +G + + +G G P L+ + PG P P+ P + + PGLPG GA + Sbjct: 266 RGFDGRNGEKGETGAPGLKG--ENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGND 323 Query: 372 QGRG 383 RG Sbjct: 324 GARG 327
>AGO2_DROME (Q9VUQ5) Argonaute 2 protein| Length = 1214 Score = 30.0 bits (66), Expect = 3.1 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%) Frame = +3 Query: 198 QGHEVEHQHQGRGGLPRL-----RHREQGHWPGHQALPRPVPPCASGAVQPGLPGRVGAV 362 QG E +Q + G P +++ +G QA P P+PP +G+++ G G+ G V Sbjct: 357 QGQEGGYQQRPPGQQPNQTQSQGQYQSRGPPQQQQAAPLPLPPQPAGSIKRGTIGKPGQV 416
>MUC1_HUMAN (P15941) Mucin-1 precursor (MUC-1) (Polymorphic epithelial mucin)| (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) (H23AG) (Peanut-reactive urinary mucin) (PUM) Length = 1255 Score = 25.0 bits (53), Expect(2) = 3.9 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 10/36 (27%) Frame = -3 Query: 379 RPCSPSTAP----------TRPGSPGCTAPDAQGGT 302 RP STAP TRP +PG TAP A G T Sbjct: 905 RPAPGSTAPPAHGVTSAPDTRP-APGSTAPPAHGVT 939 Score = 23.1 bits (48), Expect(2) = 3.9 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = -1 Query: 315 HRVGLAEGVLDGLASGLVHDG 253 H V A G G AS LVH+G Sbjct: 956 HNVTSASGSASGSASTLVHNG 976
>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor| Length = 1463 Score = 29.6 bits (65), Expect = 4.1 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = +3 Query: 198 QGHEVEHQHQGRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQ--PGLPGRVGAVDGE 371 +G + + +G G P L+ + PG P P+ P + + PGLPG GA + Sbjct: 265 RGFDGRNGEKGETGAPGLKG--ENGLPGDNGAPGPMGPRGAPGERGRPGLPGAAGARGND 322 Query: 372 QGRG 383 RG Sbjct: 323 GARG 326
>CO8A1_RABIT (P14282) Collagen alpha-1(VIII) chain precursor (Endothelial| collagen) Length = 744 Score = 29.6 bits (65), Expect = 4.1 Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 16/78 (20%) Frame = +3 Query: 225 QGRGGLPRLRHREQGHWPGHQALPR----------PVPPCASGAVQPGLPG-----RVGA 359 QG GLP + Q PG P P PP G +PG PG +G Sbjct: 307 QGPPGLPGVGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGVGKPGFPGPKGDRGIGG 366 Query: 360 VDGEQG-RGQRLQVRAHG 410 V G G RG++ V A G Sbjct: 367 VPGALGPRGEKGPVGAPG 384
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor| Length = 1464 Score = 29.6 bits (65), Expect = 4.1 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = +3 Query: 198 QGHEVEHQHQGRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQ--PGLPGRVGAVDGE 371 +G + + +G G P L+ + PG P P+ P + + PGLPG GA + Sbjct: 265 RGFDGRNGEKGETGAPGLKG--ENGLPGDNGAPGPMGPRGAPGERGRPGLPGAAGARGND 322 Query: 372 QGRG 383 RG Sbjct: 323 GARG 326
>LEG3_RABIT (P47845) Galectin-3 (Galactose-specific lectin 3) (Mac-2 antigen)| (IgE-binding protein) (35 kDa lectin) (Carbohydrate-binding protein 35) (CBP 35) (Laminin-binding protein) (Lectin L-29) Length = 241 Score = 29.6 bits (65), Expect = 4.1 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 7/55 (12%) Frame = +3 Query: 216 HQHQGRGGLPRLRHREQGHWPGH-------QALPRPVPPCASGAVQPGLPGRVGA 359 +Q G GG P + G +PGH QA P P P + PG PG GA Sbjct: 27 NQPAGPGGYPGAAY--PGAYPGHAPGAYPGQAPPGPYPGPGAHGAYPGQPGGPGA 79
>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain| Length = 1049 Score = 29.6 bits (65), Expect = 4.1 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = +3 Query: 198 QGHEVEHQHQGRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQ--PGLPGRVGAVDGE 371 +G + + +G G P L+ + PG P P+ P + + PGLPG GA + Sbjct: 110 RGFDGRNGEKGEPGAPGLKG--ENGVPGEDGAPGPMGPRGAPGERGRPGLPGAAGARGND 167 Query: 372 QGRG 383 RG Sbjct: 168 GARG 171
>RL21_ARCFU (O28743) 50S ribosomal protein L21e| Length = 97 Score = 29.3 bits (64), Expect = 5.3 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +3 Query: 306 PPCASGAVQPGLPGRVGAVDGEQGRGQRLQVRAHGE 413 P G P GR G V G++GR +QVR G+ Sbjct: 46 PASQKGMPHPRFQGRTGVVIGQRGRAYLVQVRDGGK 81
>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 29.3 bits (64), Expect = 5.3 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Frame = +3 Query: 276 PGHQALPRPV-PPCASGAV-QPGLPGRVGAVDGEQGRGQR 389 PG Q LP P PP +G + G+PG +GA RG+R Sbjct: 629 PGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGER 668
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 29.3 bits (64), Expect = 5.3 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Frame = +3 Query: 276 PGHQALPRPV-PPCASGAV-QPGLPGRVGAVDGEQGRGQR 389 PG Q LP P PP +G + G+PG +GA RG+R Sbjct: 629 PGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGER 668
>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 29.3 bits (64), Expect = 5.3 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = +3 Query: 276 PGHQALPRPV-PPCASGAV-QPGLPGRVGAVDGEQGRGQR 389 PG Q LP P PP +G + G+PG GA RG+R Sbjct: 629 PGFQGLPGPAGPPGEAGKPGEQGVPGNAGAPGPAGARGER 668
>CDX2_MESAU (Q04649) Homeobox protein CDX-2 (Caudal-type homeobox protein 2)| Length = 313 Score = 29.3 bits (64), Expect = 5.3 Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 5/50 (10%) Frame = +3 Query: 255 HREQGHWPGHQALPRPVPPCASGAVQ---PGLPG--RVGAVDGEQGRGQR 389 H H P H P P CASG +Q PG PG GA + GQR Sbjct: 115 HHHPHHHPHH---PAAAPSCASGLLQTLNPGPPGPAATGAAEQLSPSGQR 161
>CDX2_HUMAN (Q99626) Homeobox protein CDX-2 (Caudal-type homeobox protein 2)| (CDX-3) Length = 313 Score = 29.3 bits (64), Expect = 5.3 Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 3/43 (6%) Frame = +3 Query: 255 HREQGHWPGHQALPRPVPPCASGAVQ---PGLPGRVGAVDGEQ 374 H H P H P P CASG +Q PG PG EQ Sbjct: 116 HHHPHHHPHH---PAAAPSCASGLLQTLNPGPPGPAATAAAEQ 155
>SYV_HAEDU (Q7VN93) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 961 Score = 29.3 bits (64), Expect = 5.3 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 18/124 (14%) Frame = +1 Query: 55 GNCGGRPMPPQPTVKIYCRANPNYAMS---VRNGKVVLAPANPKDDYQHWIKDMR-WSTS 222 G+ GG P+ P T + Y P ++ V NG++ P ++ Y W++D++ W S Sbjct: 373 GDRGGVPIEPMLTDQWYVSVKPLAEVATKAVENGEIQFVPKQYENLYFSWMRDIQDWCIS 432 Query: 223 IK-----------DEEGYPAFAIVNKATGQAIKHSLGQSHPVRLVPYNPDFLD---ESVL 360 + DE G + IKH+L P + + D LD S L Sbjct: 433 RQLWWGHRIPAWYDESG--NVYVARTEAEVRIKHNLPLDLP---LTQDEDVLDTWFSSGL 487 Query: 361 WTES 372 WT S Sbjct: 488 WTFS 491
>CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor| Length = 1759 Score = 29.3 bits (64), Expect = 5.3 Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = +3 Query: 276 PGHQALPRPVPPCASGAV-QPGLPGRVGAVDGEQG 377 PGH LP PV P G V PG PG+ G +DG G Sbjct: 387 PGHDGLPGPVGP--RGPVGAPGAPGQPG-IDGMPG 418
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 29.3 bits (64), Expect = 5.3 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Frame = +3 Query: 276 PGHQALPRPV-PPCASGAV-QPGLPGRVGAVDGEQGRGQR 389 PG Q LP P PP +G + G+PG +GA RG+R Sbjct: 640 PGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGER 679
>CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)| Length = 779 Score = 29.3 bits (64), Expect = 5.3 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Frame = +3 Query: 276 PGHQALPRPV-PPCASGAV-QPGLPGRVGAVDGEQGRGQR 389 PG Q LP P PP +G + G+PG +GA RG+R Sbjct: 205 PGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGER 244
>Y4762_ARATH (Q8RY73) Protein At4g17620, chloroplast precursor| Length = 544 Score = 29.3 bits (64), Expect = 5.3 Identities = 26/71 (36%), Positives = 30/71 (42%) Frame = +3 Query: 183 LPALDQGHEVEHQHQGRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQPGLPGRVGAV 362 +P L G ++ H GRGG+ R R PG LPRP P PGR G Sbjct: 135 IPVLPAGWSNDN-HGGRGGMGRGRWSNGRGGPG--LLPRPGP----------YPGRGGNR 181 Query: 363 DGEQGRGQRLQ 395 G GR Q Q Sbjct: 182 GGFGGRYQNYQ 192
>IGHG3_HUMAN (P01860) Ig gamma-3 chain C region (Heavy chain disease protein)| (HDC) Length = 290 Score = 29.3 bits (64), Expect = 5.3 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = -3 Query: 385 CPRPCSPSTAPTRPGSPGCTAPDAQGG 305 CPR P + T P P C AP+ GG Sbjct: 54 CPRCPEPKSCDTPPPCPRCPAPELLGG 80
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 29.3 bits (64), Expect = 5.3 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Frame = +3 Query: 276 PGHQALPRPV-PPCASGAV-QPGLPGRVGAVDGEQGRGQR 389 PG Q LP P PP +G + G+PG +GA RG+R Sbjct: 636 PGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGER 675
>APA_MYCAV (Q48919) Alanine and proline-rich secreted protein apa precursor| (45/47 kDa antigen) (Fibronectin attachment protein) (FAP-A) Length = 381 Score = 29.3 bits (64), Expect = 5.3 Identities = 13/31 (41%), Positives = 14/31 (45%) Frame = -3 Query: 367 PSTAPTRPGSPGCTAPDAQGGTGRGSA*WPG 275 P P PG PG AP A G G+ PG Sbjct: 304 PPAPPAAPGGPGAPAPGAPGAPAPGAPAAPG 334
>SYV_NOCFA (Q5Z048) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 893 Score = 29.3 bits (64), Expect = 5.3 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%) Frame = +1 Query: 133 SVRNGKVVLAPANPKDDYQHWIKDMR-WSTSIKDEEGYPAFAIVNKATGQAIKHSLGQSH 309 +VRNG+VV+ PA+ + + W+ +M W+ S + G+ I G+ + G++ Sbjct: 388 AVRNGQVVIHPASQEPRWFEWVDNMHDWTISRQLWWGH-RIPIWYGPDGEVVCLGPGETP 446 Query: 310 PVRLVPYNPDFLD---ESVLW 363 P V +PD LD S LW Sbjct: 447 PEGWV-QDPDVLDTWFSSGLW 466
>SASH1_MOUSE (P59808) SAM and SH3 domain-containing protein 1| Length = 1230 Score = 29.3 bits (64), Expect = 5.3 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%) Frame = -3 Query: 391 SRCPRPCSPS-TAPTRPGSPGCTAP 320 S CP P P ++ T PGSP CT P Sbjct: 1016 SDCPSPREPRPSSGTEPGSPACTRP 1040
>M3K12_HUMAN (Q12852) Mitogen-activated protein kinase kinase kinase 12 (EC| 2.7.11.25) (Mixed lineage kinase) (Leucine-zipper protein kinase) (ZPK) (Dual leucine zipper bearing kinase) (DLK) (MAPK-upstream kinase) (MUK) Length = 859 Score = 28.9 bits (63), Expect = 6.9 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -3 Query: 382 PRPCSPSTAPTRPGSPGCTAPDAQGG 305 P P T P+ +PG T+PD+ GG Sbjct: 635 PPPARGDTPPSEGSAPGSTSPDSPGG 660
>PHLPP_MOUSE (Q8CHE4) PH domain leucine-rich repeat-containing protein| phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat protein phosphatase) (Pleckstrin homology domain-containing family E protein 1) (Suprachiasmatic nucleus circadian oscillatory Length = 1687 Score = 28.9 bits (63), Expect = 6.9 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 3/37 (8%) Frame = +3 Query: 270 HWPGHQALPRPVPPCASGAVQPGLPGRV---GAVDGE 371 H PG A PRP P S +QP P V G + GE Sbjct: 356 HRPGRPAQPRPPSPKTSALLQPKAPTGVDSTGVIAGE 392
>SYV_PARUW (Q6MAM1) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 949 Score = 28.9 bits (63), Expect = 6.9 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%) Frame = +1 Query: 136 VRNGKVVLAPANPKDDYQHWIKDMR-WSTS 222 V+NG+V L P++ + Y HWI ++R W S Sbjct: 376 VQNGQVKLIPSHWESTYFHWIDNLRDWCIS 405
>GUN5_THEFU (Q01786) Endoglucanase E-5 precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase E-4) (Cellulase E-5) (Cellulase E5) Length = 466 Score = 28.9 bits (63), Expect = 6.9 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%) Frame = -3 Query: 376 PCSPSTAPTRPGSPGCTAPD--AQGGTG 299 PC + P PG PG +PD Q GTG Sbjct: 135 PCDEGSEPGGPGGPGTPSPDPGTQPGTG 162
>ZN646_HUMAN (O15015) Zinc finger protein 646| Length = 1829 Score = 28.9 bits (63), Expect = 6.9 Identities = 14/36 (38%), Positives = 16/36 (44%) Frame = +3 Query: 240 LPRLRHREQGHWPGHQALPRPVPPCASGAVQPGLPG 347 LP LR Q H PG +P C G + PG G Sbjct: 860 LPALRSHFQNHRPGEATSAQPFLCCLCGMIFPGRAG 895
>SYK_PASMU (P57822) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 501 Score = 28.9 bits (63), Expect = 6.9 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 11/83 (13%) Frame = +1 Query: 223 IKDEEGYPAFAIVNKATGQAIKHSLGQ-----SHPVRLVPY------NPDFLDESVLWTE 369 I+ ++ + ++VN + +H L Q +HP + P NP+ D L+ Sbjct: 357 IEVQKSWGLGSLVNVIFEEVAEHHLIQPTFLMAHPAEISPLARRNDENPEVTDRFELFIG 416 Query: 370 SRDVGNGFRCVRMVNNIYLNFDA 438 R++GNGF + + FDA Sbjct: 417 GREIGNGFSELNDAEDQNERFDA 439
>RELA_STRAT (O85709) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP| 3'-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase) Length = 841 Score = 28.9 bits (63), Expect = 6.9 Identities = 19/49 (38%), Positives = 20/49 (40%) Frame = +3 Query: 189 ALDQGHEVEHQHQGRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQP 335 A D G VEH P R R + P PRP PP A A QP Sbjct: 27 AQDGGGPVEHDRSAPADKPAERTRPK---PAPPERPRPPPPRARAAGQP 72
>AGALC_ASPNG (Q9UUZ4) Alpha-galactosidase C precursor (EC 3.2.1.22) (Melibiase)| Length = 747 Score = 28.9 bits (63), Expect = 6.9 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +3 Query: 291 LPRPVPPCASGAVQPGLPGRVGAVDGEQGRG 383 +P PV P +G V G+PGR+ +QGRG Sbjct: 74 IPSPVEPAVNGWV--GMPGRIRREFPDQGRG 102
>BCL9_MOUSE (Q9D219) B-cell lymphoma 9 protein (Bcl-9)| Length = 1425 Score = 28.5 bits (62), Expect = 9.1 Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 3/97 (3%) Frame = +1 Query: 4 GTRAPPVPYGMSQVNVDGNCGGR---PMPPQPTVKIYCRANPNYAMSVRNGKVVLAPANP 174 G PP + VN+ G+ PMPP+PT+ NP M R K + + P Sbjct: 967 GGPPPPTASQPASVNIPGSLPSSTPYPMPPEPTLS----QNPLSIMMSRMSKFAMPSSTP 1022 Query: 175 KDDYQHWIKDMRWSTSIKDEEGYPAFAIVNKATGQAI 285 Y IK + S P +N G I Sbjct: 1023 L--YHDAIKTVASSDDDSPPARSPNLPSMNSMPGMGI 1057
>COBA1_MOUSE (Q61245) Collagen alpha-1(XI) chain precursor| Length = 1804 Score = 28.5 bits (62), Expect = 9.1 Identities = 29/74 (39%), Positives = 34/74 (45%), Gaps = 9/74 (12%) Frame = +3 Query: 183 LPAL--DQGHEVEHQHQGRGGLP-----RLRHREQG--HWPGHQALPRPVPPCASGAVQP 335 LP L D+GH E QG GLP R E G PG +A PR + P Sbjct: 603 LPGLPGDKGHRGERGPQGPPGLPGDDGMRGEDGEIGPRGLPG-EAGPRGLLGPRGTPGPP 661 Query: 336 GLPGRVGAVDGEQG 377 G PG +G +DG QG Sbjct: 662 GQPG-IGGIDGPQG 674
>YAO2_SCHPO (Q10081) Hypothetical UPF0039 protein C11D3.02c in chromosome I| Length = 150 Score = 28.5 bits (62), Expect = 9.1 Identities = 17/66 (25%), Positives = 29/66 (43%) Frame = +1 Query: 103 YCRANPNYAMSVRNGKVVLAPANPKDDYQHWIKDMRWSTSIKDEEGYPAFAIVNKATGQA 282 Y R P +VR G+VV+ P K+ Y + TS ++ F + ++ Q Sbjct: 63 YARLIPEQQQTVRIGRVVVDPDERKNGYGRKLMLQALETSKQEFSSSKTFVLSSQEYAQP 122 Query: 283 IKHSLG 300 + S+G Sbjct: 123 LYRSVG 128
>STNB_DROME (Q24212) Protein stoned-B (StonedB) (Stn-B)| Length = 1262 Score = 28.5 bits (62), Expect = 9.1 Identities = 12/21 (57%), Positives = 12/21 (57%) Frame = -3 Query: 382 PRPCSPSTAPTRPGSPGCTAP 320 PRP P AP RP PG AP Sbjct: 236 PRPPPPRPAPPRPAPPGQAAP 256
>MBD1_HUMAN (Q9UIS9) Methyl-CpG-binding domain protein 1 (Methyl-CpG-binding| protein MBD1) (Protein containing methyl-CpG-binding domain 1) Length = 605 Score = 28.5 bits (62), Expect = 9.1 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 6/41 (14%) Frame = +3 Query: 240 LPRLRHRE---QGHW-PGHQALPRPV--PPCASGAVQPGLP 344 LP+++ + Q W PG L PV P C S AV PGLP Sbjct: 495 LPQVKQEKADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLP 535
>MYCN_BRARE (Q9PSJ0) N-myc protein (zN-Myc) (Fragment)| Length = 93 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = +3 Query: 273 WPGHQALPRPVPPCASGAVQPGLPGRVGAVDGE 371 W + LP P P S A PG PG +GAV G+ Sbjct: 4 WKKFELLPTP-PLSPSRAALPGDPGELGAVAGD 35
>LCE2B_HUMAN (O14633) Late cornified envelope protein 2B (Late envelope protein| 10) (Small proline-rich-like epidermal differentiation complex protein 1B) (Skin-specific protein Xp5) Length = 110 Score = 28.5 bits (62), Expect = 9.1 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Frame = -3 Query: 388 RCPRPCSPSTAP-TRPGSPGCTAPDAQGGTGRGS 290 +CP PCSP+ + P S GC P + G G+ Sbjct: 35 QCPAPCSPAVSSCCGPISGGCCGPSSGGCCNSGA 68 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,412,335 Number of Sequences: 219361 Number of extensions: 1242415 Number of successful extensions: 6723 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 5640 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6669 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
