ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2a21 |
|---|---|
| Clone Library Name | barley_pub |
>UPPP1_BACHD (Q9KFL5) Undecaprenyl-diphosphatase 1 (EC 3.6.1.27) (Undecaprenyl| pyrophosphate phosphatase 1) (Bacitracin resistance protein 1) Length = 274 Score = 31.6 bits (70), Expect = 2.1 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%) Frame = +3 Query: 495 LGPSVLLVTGIVP-----TLWLPLPSVFLGPNIAGLLSLVGLDCIFNMGAMLFFLM 647 LG VL ++ IV LW+P F+G IA +SL+ I G +++F + Sbjct: 205 LGSGVLAISDIVQDPHFTALWIPYTIAFIGSFIASYVSLLWFMNIMRHGKLIYFAL 260
>HAIR_MOUSE (Q61645) Protein hairless| Length = 1182 Score = 27.7 bits (60), Expect(2) = 2.7 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +3 Query: 396 APEIPILQSDQDVVDVQNEPSRQLATFKLPMWLLGPSVLLVTGIVPTLWLPLPSV 560 AP P L SD + ++ + Q+ K+ LGP + +G+ L LPL V Sbjct: 776 APVTPALPSDDRITNILDSIIAQVVERKIQEKALGPGLRAGSGLRKGLSLPLSPV 830 Score = 21.9 bits (45), Expect(2) = 2.7 Identities = 11/35 (31%), Positives = 17/35 (48%) Frame = +1 Query: 250 PCSQAILKTLHCDALRICLGRPLFRMLLQRTMPAL 354 PC ++ + L A+++CLG M PAL Sbjct: 749 PCP-SLCELLASTAVKLCLGHDRIHMAFAPVTPAL 782
>ACHA9_CHICK (Q9PTS8) Neuronal acetylcholine receptor protein, alpha-9 subunit| precursor (Nicotinic acetylcholine receptor subunit alpha 9) (NACHR alpha 9) Length = 484 Score = 31.2 bits (69), Expect = 2.8 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Frame = +3 Query: 279 ALRCTKNLPWEASLP-YASAEDDASIIMGTNVVEAIDTEEAPEIPILQSDQDVVDVQNEP 455 ++R NL W + Y A+DD S + TNVV D + + P + VVDV P Sbjct: 106 SIRIPSNLVWRPDIVLYNKADDDFSEPVNTNVVLRYDGKITWDAPAITKSSCVVDVSYFP 165
>LRC40_BRARE (Q7SXW3) Leucine-rich repeat-containing protein 40| Length = 601 Score = 31.2 bits (69), Expect = 2.8 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 7/62 (11%) Frame = +3 Query: 75 PEELRPARSRGKSDQCWNSTSCTMASLLCSQ-------IKLNRAYVRRQVHENRLTRLPR 233 P+E + S G D+ W T T L ++ +KL A V +H+N+L+ LP Sbjct: 61 PQEAKQNVSFGAEDRWWEQTDLTKLLLSSNKLQSIPDDVKLLPALVVLDIHDNQLSSLPD 120 Query: 234 SL 239 S+ Sbjct: 121 SI 122
>KCNK9_HUMAN (Q9NPC2) Potassium channel subfamily K member 9 (Acid-sensitive| potassium channel protein TASK-3) (TWIK-related acid-sensitive K(+) channel 3) (Two pore potassium channel KT3.2) Length = 374 Score = 31.2 bits (69), Expect = 2.8 Identities = 18/38 (47%), Positives = 23/38 (60%) Frame = +3 Query: 3 RHEAQXRASAAGEKNKNCSEASSPPEELRPARSRGKSD 116 R +A+ RAS AG +N S PEE RP+R R K+D Sbjct: 255 RRDAEERASLAGNRN---SMVIHIPEEPRPSRPRYKAD 289
>YACH_ECOLI (P36682) Hypothetical protein yacH| Length = 617 Score = 30.8 bits (68), Expect = 3.6 Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 3/135 (2%) Frame = +3 Query: 75 PEELRPARSRGKSDQCWNSTSCTMASLLCSQIKLNRAYVRRQVHENRLTRLPRSLHWS-- 248 P ++ A S + DQ W + L SQ+ + Y T + +++ WS Sbjct: 66 PAVVKSAFSTAQIDQ-WVAPVALYPDALLSQVLMASTYP---------TNVAQAVQWSHD 115 Query: 249 -PLQSGHFKNIALRCTKNLPWEASLPYASAEDDASIIMGTNVVEAIDTEEAPEIPILQSD 425 PL+ G + A++ + PW+AS+ A +MG N + +A L Sbjct: 116 NPLKQG---DAAIQAVSDQPWDASVKSLVAFPQLMALMGENPQWVQNLGDA----FLAQP 168 Query: 426 QDVVDVQNEPSRQLA 470 QDV+D + RQLA Sbjct: 169 QDVMD-SVQRLRQLA 182
>LEP_BUCAI (P57347) Signal peptidase I (EC 3.4.21.89) (SPase I) (Leader| peptidase I) Length = 314 Score = 30.4 bits (67), Expect = 4.7 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -1 Query: 449 ILHVHNILITLEDWNFWSFFCINSFNN 369 IL + ++ TL FWSF+CI SF N Sbjct: 4 ILTIFLLISTLVTGIFWSFYCIKSFKN 30
>KCNQ5_HUMAN (Q9NR82) Potassium voltage-gated channel subfamily KQT member 5| (Voltage-gated potassium channel subunit Kv7.5) (Potassium channel alpha subunit KvLQT5) (KQT-like 5) Length = 897 Score = 30.0 bits (66), Expect = 6.2 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Frame = +3 Query: 393 EAPEIPILQSDQDVVDVQNEPSRQLATFKLPMWLLGPSVLLVTGIVPTL-WLPLPSVFLG 569 +A ++PI QSD V N + Q+ T P P+ L + +P + LP P L Sbjct: 677 QATQVPISQSDGSAVAATNTIANQINTAPKP---AAPTTLQIPPPLPAIKHLPRPET-LH 732 Query: 570 PNIAGL 587 PN AGL Sbjct: 733 PNPAGL 738
>CAIE_SALTY (Q8ZRX6) Carnitine operon protein caiE| Length = 198 Score = 30.0 bits (66), Expect = 6.2 Identities = 14/49 (28%), Positives = 26/49 (53%) Frame = +3 Query: 231 RSLHWSPLQSGHFKNIALRCTKNLPWEASLPYASAEDDASIIMGTNVVE 377 + LHW L + ++++A+RC L + P AE++ + GT V+ Sbjct: 147 QELHWKHLNTKEYQDLAIRCRTGL--SETKPLTQAEENRPRLKGTTDVK 193
>YCFS_ECOLI (P75954) Hypothetical protein ycfS precursor| Length = 320 Score = 29.6 bits (65), Expect = 8.0 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +2 Query: 536 FVAAIAFSVPWPKHCWPSIPSGSRL 610 F AA+A ++P + WP P+GSRL Sbjct: 16 FAAAVALALPAKANTWPLPPAGSRL 40
>POLG_BVDVN (P19711) Genome polyprotein [Contains: N-terminal protease (EC| 3.4.22.-) (N-pro) (Autoprotease p20); Capsid protein C; E(rns) glycoprotein (gp44/48); Envelope glycoprotein E1 (gp33); Envelope glycoprotein E2 (gp55); p7; Nonstructural protein 2 Length = 3988 Score = 29.6 bits (65), Expect = 8.0 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = +3 Query: 432 VVDVQNEPSRQLATFKLPMWLLGPSVLLVTGIVPTL 539 VVD+ +P Q+ T ++ + ++G L+ TG+ P L Sbjct: 3033 VVDINLQPEVQVDTSEVGITIIGRETLMTTGVTPVL 3068 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,107,466 Number of Sequences: 219361 Number of extensions: 2127743 Number of successful extensions: 6320 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 6043 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6319 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
