>ITA5_HUMAN (P08648) Integrin alpha-5 precursor (Fibronectin receptor alpha|
           subunit) (Integrin alpha-F) (VLA-5) (CD49e antigen)
           [Contains: Integrin alpha-5 heavy chain; Integrin
           alpha-5 light chain]
          Length = 1049

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 25/80 (31%), Positives = 33/80 (41%)
 Frame = +3

Query: 24  PLGILYLPTCVGFGYRYPFVEGRSSFSWEYGIGYILQRRSAWYEPRGEAIASPRGSYFSA 203
           P+G  YL T   F     +   RS FSW  G GY     SA +   G  +    GSYF  
Sbjct: 172 PVGTCYLSTD-NFTRILEYAPCRSDFSWAAGQGYCQGGFSAEFTKTGRVVLGGPGSYFWQ 230

Query: 204 AALGTRTSARGIFSTPSYPE 263
             + + T  +   +   YPE
Sbjct: 231 GQILSATQEQ--IAESYYPE 248

>DMBT1_PIG (Q4A3R3) Deleted in malignant brain tumors 1 protein precursor|
          Length = 1204

 Score = 31.6 bits (70), Expect = 0.87
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +3

Query: 123 YILQRRSAWYEPRGEAIASPRGSYFSAAALGTRTSARGIFSTPSYP 260
           Y       W+ P     ASP     S+   G  TSA G FS+PSYP
Sbjct: 494 YTTTPSQTWWHPTTTTAASP-----SSPCGGFLTSASGTFSSPSYP 534

>CP74A_ARATH (Q96242) Cytochrome P450 74A, chloroplast precursor (EC 4.2.1.92)|
           (Allene oxide synthase) (Hydroperoxide dehydrase)
          Length = 518

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +1

Query: 61  SGTGTLLLKVVRAFPGSMASVTYFSAVAPGMSLVEKQLL--VHGAHTSALQRLVLGPRLE 234
           S  GT    + RAF G+  + T   A APG  L+ K +L  +H   +  L R++  P + 
Sbjct: 212 SSDGTAFNFLARAFYGTNPADTKLKADAPG--LITKWVLFNLHPLLSIGLPRVIEEPLIH 269

Query: 235 AFSLPLLTLK 264
            FSLP   +K
Sbjct: 270 TFSLPPALVK 279

>SYP2L_HUMAN (Q9H987) Synaptopodin 2-like protein|
          Length = 977

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 22/67 (32%), Positives = 29/67 (43%)
 Frame = -1

Query: 253 EGVEKMPRAEVRVPSAAALKYEPRGLAIASPRGSYQALRR*SM*PMPYSQEKLERPSTKG 74
           EG++  PRA+   P AA L   P    +ASPR         +  P P    +  RP T G
Sbjct: 417 EGLQSPPRAQSAPPEAAVLPPSPLPAPVASPRPFQPGGGAPT--PAPSIFNRSARPFTPG 474

Query: 73  YLYPKPT 53
               +PT
Sbjct: 475 LQGQRPT 481

>COX1_CHLRE (P08681) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 505

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
 Frame = +1

Query: 34  FSTYPPVSVSGTGTLL-LKVVRAFPGSMAS--------VTYFSAVAPGMSLVEKQLLVHG 186
           ++ YPP+SV  +GT + L ++      ++S        VT     APGM L+   L V  
Sbjct: 125 WTAYPPLSVQHSGTSVDLAILSLHLNGLSSILGAVNMLVTVAGLRAPGMKLLHMPLFVWA 184

Query: 187 AHTSALQRLVLGPRLEAFSLPLLT 258
              +A+  ++  P L A  + LLT
Sbjct: 185 IALTAVLVILAVPVLAAALVMLLT 208

>VL2_HPV58 (P26538) Minor capsid protein L2|
          Length = 472

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 280 VSLNL*PSFG*PSLLRPSVPTRGSTGILTCCPSTT 384
           VS +L PSF  PS+LRP  P   S  ++   P+ +
Sbjct: 155 VSTHLNPSFTEPSVLRPPAPAEASGHLIFSSPTVS 189

>ITA5_MOUSE (P11688) Integrin alpha-5 precursor (Fibronectin receptor alpha|
           subunit) (Integrin alpha-F) (VLA-5) (CD49e antigen)
           [Contains: Integrin alpha-5 heavy chain; Integrin
           alpha-5 light chain]
          Length = 1053

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 25/85 (29%), Positives = 33/85 (38%)
 Frame = +3

Query: 24  PLGILYLPTCVGFGYRYPFVEGRSSFSWEYGIGYILQRRSAWYEPRGEAIASPRGSYFSA 203
           P+G  YL T   F     +   RS F    G GY     SA +   G  +    GSYF  
Sbjct: 175 PVGTCYLST-ENFTRILEYAPCRSDFGSAAGQGYCQGGFSAEFTKTGRVVLGGPGSYFWQ 233

Query: 204 AALGTRTSARGIFSTPSYPEKAGSP 278
             + + T  +   S   YPE   +P
Sbjct: 234 GQILSATQEQ--ISESYYPEYLINP 256

>RRP45_YEAST (Q05636) Exosome complex exonuclease RRP45 (EC 3.1.13.-) (Ribosomal|
           RNA-processing protein 45)
          Length = 305

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 6   HEEKGCPLGILYLPTCVGFGYRYP 77
           +E +  PLGIL++P CV F +  P
Sbjct: 180 NEREPVPLGILHIPICVTFSFFNP 203

>GUN9_ARATH (Q9C9H5) Probable family 9 endoglucanase At1g71380 precursor (EC|
           3.2.1.4)
          Length = 484

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 313 PSLLRPSVPTRGSTGILTCCPSTTPFGLILGPDSPSVDEPC 435
           P L    V  R +T  L  C   TP  L +G   P+VD  C
Sbjct: 105 PELENARVNIRWATDYLLKCARATPGKLYVGVGDPNVDHKC 145

>YBIC_ECOLI (P30178) Hypothetical oxidoreductase ybiC (EC 1.1.1.-)|
          Length = 361

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 134 LKYVTDAILPGKARTTFNKRVPVP 63
           L Y T AI  GK R  ++K VPVP
Sbjct: 179 LDYATSAIAFGKTRVAWHKGVPVP 202

>YBIC_ECO57 (P58409) Hypothetical oxidoreductase ybiC (EC 1.1.1.-)|
          Length = 361

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 134 LKYVTDAILPGKARTTFNKRVPVP 63
           L Y T AI  GK R  ++K VPVP
Sbjct: 179 LDYATSAIAFGKTRVAWHKGVPVP 202


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,124,266
Number of Sequences: 219361
Number of extensions: 1618254
Number of successful extensions: 3918
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3913
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)