Clone Name	basd1l13
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|U37703.1|HVU37703 Hordeum vulgare ORF 62 mRNA, chloroplast ge...	438	e-120
2	dbj|AB027572.1| Triticum aestivum chloroplast DNA, 21.1-kb fragm...	351	1e-93
3	dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome	351	1e-93
4	gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar N...	254	3e-64
5	gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA...	254	3e-64
6	gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-1...	254	3e-64
7	gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome...	254	3e-64
8	gb|AC130726.2| Oryza sativa (japonica cultivar-group) chromosome...	254	3e-64
9	gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3	254	3e-64
10	emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chlor...	254	3e-64
11	emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4,...	254	3e-64
12	gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome...	254	3e-64
13	gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar N...	254	3e-64
14	dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D...	254	3e-64
15	dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D...	254	3e-64
16	dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D...	254	3e-64
17	dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...	254	3e-64
18	dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...	254	3e-64
19	dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...	254	3e-64
20	gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic ...	254	3e-64
21	dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic D...	254	3e-64
22	dbj|AP005408.2| Oryza sativa (japonica cultivar-group) genomic D...	254	3e-64
23	gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome...	254	3e-64
24	dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome	254	3e-64
25	emb|X13366.1|CHSCPSBD Secale cereale chloroplast psbD, psbC and ...	252	1e-63
26	dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete ...	252	1e-63
27	dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...	246	6e-62
28	gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...	246	6e-62
29	emb|AL731758.4|CNS08C87 Oryza sativa chromosome 12, . BAC OSJNBa...	246	6e-62
30	emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome	244	2e-61
31	gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast,...	244	2e-61
32	gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome	244	2e-61
33	emb|X05295.1|CHZPTRNS Zea perennis cpDNA EcoRI-PstI fragment con...	244	2e-61
34	emb|X04184.1|CHZMTRNS Zea mays chloroplast tv-UGA gene for trans...	244	2e-61
35	emb|X02560.1|CHTATRN1 Wheat chloroplast genes for tRNA-Gly (GCC)...	192	8e-46
36	emb|AL606993.2|OSJN00121 Oryza sativa genomic DNA, chromosome 4,...	147	4e-32
37	gb|AC093544.8| Medicago truncatula chloroplast, complete genome,...	139	1e-29
38	gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, ...	137	4e-29
39	emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomi...	135	2e-28
40	gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloropl...	133	6e-28
41	emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complet...	133	6e-28
42	gb|AC140103.7| Medicago truncatula clone mth2-9i16, complete seq...	131	3e-27
43	emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast ...	131	3e-27
44	gb|M31490.1|SPICPCPSA Spinach chloroplast trnS1 gene, partial cds	131	3e-27
45	dbj|AB035902.1| Vigna angularis chloroplast trnS gene, complete ...	131	3e-27
46	dbj|AB035901.1| Vigna angularis chloroplast trnS, psbC genes	131	3e-27
47	gb|M27309.1|PEACPD2 Pisum sativum D2 photosystem II protein and ...	129	1e-26
48	gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, comple...	127	4e-26
49	gb|AY642484.1| Cypripedium parviflorum var. parviflorum tRNA-Ser...	125	2e-25
50	gb|AY642483.1| Cypripedium acaule tRNA-Ser (trnS) gene and trnS-...	125	2e-25
51	emb|AJ627251.1| Nymphaea alba chloroplast, complete genome	123	6e-25
52	gb|AY582139.1| Panax ginseng chloroplast, complete genome	123	6e-25
53	emb|AJ970307.1| Cucumis sativus chloroplast complete genome	121	2e-24
54	gb|AC145457.1| Cicer arietinum strain FLIP84-92C clone gl1-40c9,...	121	2e-24
55	gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid...	121	2e-24
56	dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome	121	2e-24
57	emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast ...	119	1e-23
58	gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, c...	119	1e-23
59	emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome	119	1e-23
60	gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloropla...	119	1e-23
61	gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, ...	119	1e-23
62	gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome	119	1e-23
63	gb|AY642482.1| Paphiopedilum niveum tRNA-Ser (trnS) gene and trn...	117	4e-23
64	gb|AY642481.1| Paphiopedilum micranthum tRNA-Ser (trnS) gene and...	117	4e-23
65	gb|AY642480.1| Paphiopedilum lowii tRNA-Ser (trnS) gene and trnS...	117	4e-23
66	gb|AY642479.1| Paphiopedilum supardii tRNA-Ser (trnS) gene and t...	117	4e-23
67	gb|AY642477.1| Paphiopedilum hybrid cultivar tRNA-Ser (trnS) gen...	117	4e-23
68	gb|AY642476.1| Paphiopedilum philippinense tRNA-Ser (trnS) gene ...	117	4e-23
69	gb|AY642475.1| Paphiopedilum lowii var. richardianum tRNA-Ser (t...	117	4e-23
70	gb|AY642474.1| Paphiopedilum tonsum var. braemii tRNA-Ser (trnS)...	117	4e-23
71	gb|AY642473.1| Paphiopedilum insigne var. sanderae tRNA-Ser (trn...	117	4e-23
72	gb|AY642472.1| Paphiopedilum adductum tRNA-Ser (trnS) gene and t...	117	4e-23
73	gb|AY642471.1| Paphiopedilum insigne tRNA-Ser (trnS) gene and tr...	117	4e-23
74	gb|AY642470.1| Paphiopedilum glaucophyllum tRNA-Ser (trnS) gene ...	117	4e-23
75	gb|AY642469.1| Phragmipedium lindenii tRNA-Ser (trnS) gene and t...	117	4e-23
76	gb|AY642468.1| Phragmipedium sargentianum tRNA-Ser (trnS) gene a...	117	4e-23
77	gb|AY642467.1| Phragmipedium boissierianum tRNA-Ser (trnS) gene ...	117	4e-23
78	gb|AY642466.1| Phragmipedium longifolium tRNA-Ser (trnS) gene an...	117	4e-23
79	gb|AY642465.1| Phragmipedium caudatum tRNA-Ser (trnS) gene and t...	117	4e-23
80	gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast...	117	4e-23
81	emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA	115	1e-22
82	gb|AY936348.1| Cuscuta sandwichiana PsaB (psaB) and Rps14 (rps14...	115	1e-22
83	gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, compl...	115	1e-22
84	dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete s...	115	1e-22
85	dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, compl...	115	1e-22
86	emb|AJ312393.1|CTR312393 Chloroplast transformation vector pRB95	115	1e-22
87	emb|AJ312392.1|CTR312392 Chloroplast transformation vector pRB94	115	1e-22
88	emb|AJ312391.1|CTR312391 Chloroplast transformation vector pRB70	115	1e-22
89	gb|M16911.1|TOBCPSA Tobacco Ser-tRNA gene	115	1e-22
90	emb|AJ879453.1| Acorus calamus chloroplast, complete genome	113	6e-22
91	gb|AY497341.1| Castanea sativa clone Cmcs2 psbC-trnS intergenic ...	111	2e-21
92	dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complet...	111	2e-21
93	gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, comp...	109	9e-21
94	dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, co...	109	9e-21
95	dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome	109	9e-21
96	gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence	107	4e-20
97	dbj|AB086179.1| Anthoceros formosae chloroplast DNA, complete ge...	103	6e-19
98	gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, ...	103	6e-19
99	gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome	98	3e-17
100	emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloropl...	96	1e-16
101	gb|M81884.1|EPFCPCG Epifagus virginiana chloroplast, complete ge...	88	3e-14
102	emb|X61798.1|CHEVRPS E.virginiana plastid rps14, rps2 and tRNA g...	88	3e-14
103	emb|AJ427520.1|ENA427520 Eritrichium nanum chloroplast tRNA-Ser(...	88	3e-14
104	emb|AJ427519.1|ENA427519 Eritrichium nanum chloroplast tRNA-Ser(...	88	3e-14
105	emb|AJ427518.1|ENA427518 Eritrichium nanum chloroplast tRNA-Ser(...	88	3e-14
106	emb|AJ427517.1|ENA427517 Eritrichium nanum chloroplast tRNA-Ser(...	88	3e-14
107	emb|AJ427516.1|ENA427516 Eritrichium nanum chloroplast tRNA-Ser(...	88	3e-14
108	emb|AJ427515.1|ENA427515 Eritrichium nanum chloroplast tRNA-Ser(...	88	3e-14
109	emb|AJ427514.1|ENA427514 Eritrichium nanum chloroplast tRNA-Ser(...	88	3e-14
110	gb|AC099324.5| Oryza sativa chromosome 3 BAC OSJNBb0043P23 genom...	84	5e-13
111	gb|AY337650.1| Pandanus maximus isolate Sp_8 chloroplast trnS-yc...	82	2e-12
112	gb|AY337649.1| Pandanus odoratissimus isolate Sp_7 chloroplast t...	82	2e-12
113	gb|AF494278.1| Chaetosphaeridium globosum chloroplast, complete ...	82	2e-12
114	gb|AF301469.1|AF301469 Spiranthes vernalis tRNA-Ser gene, partia...	80	8e-12
115	gb|AF301468.1|AF301468 Spiranthes romanzoffiana tRNA-Ser gene, p...	80	8e-12
116	gb|AF301467.1|AF301467 Spiranthes magnicamporum tRNA-Ser gene, p...	80	8e-12
117	gb|AF301466.1|AF301466 Spiranthes diluvialis tRNA-Ser gene, part...	80	8e-12
118	gb|AF301465.1|AF301465 Spiranthes cernua tRNA-Ser gene, partial ...	80	8e-12
119	gb|AF301464.1|AF301464 Platanthera praeclara tRNA-Ser gene, part...	80	8e-12
120	gb|AY660566.1| Huperzia lucidula chloroplast, complete genome	80	8e-12
121	dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast ...	80	8e-12
122	dbj|AB084146.1| Prunus salicina PS-Se gene for Se-RNase, partial...	76	1e-10
123	gb|AY337664.1| Pandanus princeps isolate Sp_22 chloroplast trnS-...	74	5e-10
124	gb|AY337659.1| Sararanga philippinensis isolate Sp_17 chloroplas...	74	5e-10
125	gb|AY337651.1| Pandanus peyrierasii isolate Sp_9 chloroplast trn...	74	5e-10
126	gb|AY337648.1| Pandanus linguiformis isolate Sp_6 chloroplast tr...	74	5e-10
127	gb|AY337643.1| Pandanus microcarpus isolate Sp_1 chloroplast trn...	74	5e-10
128	dbj|AB234788.1| Chrysanthemum zawadskii chloroplast gene for psb...	72	2e-09
129	dbj|AB234787.1| Chrysanthemum zawadskii chloroplast gene for psb...	72	2e-09
130	dbj|AB234786.1| Chrysanthemum zawadskii chloroplast gene for psb...	72	2e-09
131	dbj|AB234785.1| Chrysanthemum zawadskii chloroplast gene for psb...	72	2e-09
132	dbj|AB234784.1| Chrysanthemum zawadskii chloroplast gene for psb...	72	2e-09
133	dbj|AB234824.1| Nipponanthemum nipponicum chloroplast gene for p...	72	2e-09
134	dbj|AB234823.1| Ajania shiwogiku var. kinokuniensis chloroplast ...	72	2e-09
135	dbj|AB234822.1| Chrysanthemum arisanense chloroplast gene for ps...	72	2e-09
136	dbj|AB234821.1| Chrysanthemum arisanense chloroplast gene for ps...	72	2e-09
137	dbj|AB234820.1| Chrysanthemum indicum chloroplast gene for psbC-...	72	2e-09
138	dbj|AB234819.1| Chrysanthemum boreale chloroplast gene for psbC-...	72	2e-09
139	dbj|AB234818.1| Chrysanthemum indicum chloroplast gene for psbC-...	72	2e-09
140	dbj|AB234817.1| Chrysanthemum indicum chloroplast gene for psbC-...	72	2e-09
141	dbj|AB234815.1| Chrysanthemum weyrichii chloroplast gene for psb...	72	2e-09
142	dbj|AB234814.1| Chrysanthemum rupestre chloroplast gene for psbC...	72	2e-09
143	dbj|AB234813.1| Chrysanthemum japonense chloroplast gene for psb...	72	2e-09
144	dbj|AB234812.1| Chrysanthemum japonense chloroplast gene for psb...	72	2e-09
145	dbj|AB234811.1| Chrysanthemum indicum chloroplast gene for psbC-...	72	2e-09
146	dbj|AB234810.1| Chrysanthemum boreale chloroplast gene for psbC-...	72	2e-09
147	dbj|AB234809.1| Chrysanthemum zawadskii chloroplast gene for psb...	72	2e-09
148	dbj|AB234808.1| Chrysanthemum zawadskii chloroplast gene for psb...	72	2e-09
149	dbj|AB234807.1| Chrysanthemum zawadskii chloroplast gene for psb...	72	2e-09
150	dbj|AB234806.1| Chrysanthemum indicum chloroplast gene for psbC-...	72	2e-09
151	dbj|AB234805.1| Chrysanthemum indicum chloroplast gene for psbC-...	72	2e-09
152	dbj|AB234804.1| Chrysanthemum indicum chloroplast gene for psbC-...	72	2e-09
153	dbj|AB234803.1| Chrysanthemum indicum chloroplast gene for psbC-...	72	2e-09
154	dbj|AB234802.1| Chrysanthemum indicum chloroplast gene for psbC-...	72	2e-09
155	dbj|AB234801.1| Chrysanthemum indicum chloroplast gene for psbC-...	72	2e-09
156	dbj|AB234800.1| Chrysanthemum boreale chloroplast gene for psbC-...	72	2e-09
157	dbj|AB234799.1| Chrysanthemum boreale chloroplast gene for psbC-...	72	2e-09
158	dbj|AB234798.1| Chrysanthemum boreale chloroplast gene for psbC-...	72	2e-09
159	dbj|AB234797.1| Chrysanthemum boreale chloroplast gene for psbC-...	72	2e-09
160	dbj|AB234796.1| Chrysanthemum boreale chloroplast gene for psbC-...	72	2e-09
161	dbj|AB234795.1| Chrysanthemum boreale chloroplast gene for psbC-...	72	2e-09
162	dbj|AB234794.1| Chrysanthemum boreale chloroplast gene for psbC-...	72	2e-09
163	dbj|AB234793.1| Chrysanthemum boreale chloroplast gene for psbC-...	72	2e-09
164	dbj|AB234792.1| Chrysanthemum boreale chloroplast gene for psbC-...	72	2e-09
165	dbj|AB234791.1| Chrysanthemum boreale chloroplast gene for psbC-...	72	2e-09
166	dbj|AB234790.1| Chrysanthemum boreale chloroplast gene for psbC-...	72	2e-09
167	dbj|AB234789.1| Chrysanthemum boreale chloroplast gene for psbC-...	72	2e-09
168	gb|AY337663.1| Asplundia sp. MWC-2003 isolate Sp_21 chloroplast ...	70	8e-09
169	emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA	70	8e-09
170	emb|X01647.1|CHMPTRN Marchantia polymorpha chloroplast DNA for t...	70	8e-09
171	gb|AY839888.1| Camellia sinensis cultivar Taiwan Sun Cha tRNA-Se...	68	3e-08
172	gb|AY839887.1| Camellia sinensis cultivar Chin Shin Dah Pan tRNA...	68	3e-08
173	gb|AY839886.1| Camellia tenuifolia cultivar Don San tRNA-Ser and...	68	3e-08
174	gb|AY839885.1| Camellia sinensis cultivar Shy Jin Chuen tRNA-Ser...	68	3e-08
175	gb|AY839884.1| Camellia sinensis var. assamica cultivar Shan tRN...	68	3e-08
176	gb|AY839883.1| Camellia sinensis var. assamica cultivar TTES No....	68	3e-08
177	gb|AY839882.1| Camellia sinensis cultivar Gau Lu tRNA-Ser and tr...	68	3e-08
178	gb|AY839881.1| Camellia sinensis cultivar Shiang Yuan tRNA-Ser a...	68	3e-08
179	gb|AY839880.1| Camellia sinensis cultivar Chin Shin Oolong tRNA-...	68	3e-08
180	gb|AY839879.1| Camellia sinensis var. assamica cultivar Burma tR...	68	3e-08
181	gb|AY839878.1| Camellia sinensis cultivar Bair Mau Hour tRNA-Ser...	68	3e-08
182	gb|AY839877.1| Camellia sinensis cultivar Tiee Guan In tRNA-Ser ...	68	3e-08
183	gb|AY839876.1| Camellia sinensis cultivar TTES No. 12 tRNA-Ser a...	68	3e-08
184	gb|AY839875.1| Camellia furfuracea cultivar Chyh Ya Sun Cha tRNA...	68	3e-08
185	gb|AY839874.1| Camellia sinensis cultivar TTES No. 13 tRNA-Ser a...	68	3e-08
186	gb|AY363054.1| Spiranthes romanzoffiana trnS gene and trnS-trnfM...	68	3e-08
187	gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete seq...	68	3e-08
188	gb|AF433647.1| Prunus salicina S5-RNase (s-rnase) gene, s-rnase-...	68	3e-08
189	dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo...	68	3e-08
190	dbj|AB234816.1| Chrysanthemum arcticum chloroplast gene for psbC...	68	3e-08
191	dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, compl...	68	3e-08
192	dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo...	68	3e-08
193	gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete s...	68	3e-08
194	dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete genome	68	3e-08
195	gb|AY337644.1| Pandanus eydouxia isolate Sp_2 chloroplast trnS-y...	66	1e-07
196	emb|X60434.1|PUPSAE P.purpurea chloroplast DNA for tRNA-Ser and ...	66	1e-07
197	dbj|BA000038.2| Vibrio vulnificus YJ016 DNA, chromosome II, comp...	66	1e-07
198	gb|U38804.1|PPU38804 Porphyra purpurea chloroplast, complete genome	66	1e-07
199	gb|AE004278.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom...	64	5e-07
200	gb|AE004106.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom...	64	5e-07
201	gb|M20966.1|MPOCPTRSC Liverwort chloroplast Ser-tRNA-tga	64	5e-07
202	dbj|AP006715.1| Porphyra yezoensis chloroplast DNA, complete genome	64	5e-07
203	gb|AC126013.12| Medicago truncatula clone mth2-32e10, complete s...	60	8e-06
204	gb|AC130811.22| Medicago truncatula clone mth2-26b4, complete se...	60	8e-06
205	gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome	58	3e-05
206	emb|CR378680.1| Photobacterium profundum SS9 chromosome 2; segme...	58	3e-05
207	emb|CR378679.1| Photobacterium profundum SS9 chromosome 2; segme...	58	3e-05
208	emb|CR378677.1| Photobacterium profundum SS9 chromosome 2; segme...	58	3e-05
209	emb|CR378670.1| Photobacterium profundum SS9; segment 8/12	58	3e-05
210	dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome	58	3e-05
211	gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete g...	56	1e-04
212	gb|AY178864.1| Adiantum capillus-veneris chloroplast, complete g...	56	1e-04
213	gb|CP000148.1| Geobacter metallireducens GS-15, complete genome	56	1e-04
214	gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence	56	1e-04
215	gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Ph...	56	1e-04
216	gb|AE017197.1| Rickettsia typhi str. Wilmington complete genome	56	1e-04
217	gb|AE008662.1| Rickettsia conorii str. Malish 7, section 94 of 1...	56	1e-04
218	gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome	56	1e-04
219	gb|AY337662.1| Carludovica palmata isolate Sp_20 chloroplast trn...	56	1e-04
220	gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome	56	1e-04
221	gb|CP000107.1| Ehrlichia canis str. Jake, complete genome	56	1e-04
222	gb|DQ366739.1| Uncultured Prochlorococcus marinus clone HOT0M-7B...	56	1e-04
223	gb|CP000087.1| Rickettsia bellii RML369-C, complete genome	56	1e-04
224	emb|CR628337.1| Legionella pneumophila str. Lens complete genome	56	1e-04
225	emb|CR628336.1| Legionella pneumophila str. Paris complete genome	56	1e-04
226	emb|CR378668.1| Photobacterium profundum SS9; segment 6/12	56	1e-04
227	emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome	56	1e-04
228	emb|BX897699.1| Bartonella henselae strain Houston-1, complete g...	56	1e-04
229	emb|BX572608.1| Rhodopseudomonas palustris CGA009 complete genom...	56	1e-04
230	emb|BX572092.1| Prochlorococcus marinus MED4 complete genome; se...	56	1e-04
231	emb|BX321863.1| Nitrosomonas europaea ATCC 19718, complete genom...	56	1e-04
232	emb|AJ235273.1|RPXX04 Rickettsia prowazekii strain Madrid E, com...	56	1e-04
233	gb|AF454951.1|AF454951 Brucella melitensis biovar Abortus flanki...	56	1e-04
234	gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome	56	1e-04
235	gb|CP000235.1| Anaplasma phagocytophilum HZ, complete genome	56	1e-04
236	gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome	56	1e-04
237	dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...	56	1e-04
238	gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome	56	1e-04
239	gb|AE009662.1| Brucella melitensis 16M chromosome II, section 24...	56	1e-04
240	gb|AF028594.1|AF028594 Pseudomonas pseudoalcaligenes hydroxylami...	56	1e-04
241	gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome I...	56	1e-04
242	dbj|AP003846.2| Oryza sativa (japonica cultivar-group) genomic D...	56	1e-04
243	emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II...	56	1e-04
244	gb|CP000030.1| Anaplasma marginale str. St. Maries, complete genome	56	1e-04
245	gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome	56	1e-04
246	gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome	54	5e-04
247	gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge...	54	5e-04
248	gb|AE016828.2| Coxiella burnetii RSA 493, complete genome	54	5e-04
249	gb|DQ291132.1| Oltmannsiellopsis viridis chloroplast, complete g...	54	5e-04
250	gb|AF180559.1|AF180559 Viscum cruciatum chloroplast trnS(UGA)-tr...	54	5e-04
251	dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome	54	5e-04
252	gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome	54	5e-04
253	gb|U20361.1|TFU20361 Thiobacillus ferrooxidans thioredoxin (trxA...	54	5e-04
254	gb|AY958086.1| Zygnema circumcarinatum chloroplast, complete genome	52	0.002
255	emb|BX571659.1| Wolinella succinogenes, complete genome; segment...	52	0.002
256	gb|AE005777.1| Caulobacter crescentus CB15 section 103 of 359 of...	52	0.002
257	gb|AF419260.1| Viscum album subsp. creticum chloroplast trnS-trn...	52	0.002
258	gb|AE006470.1| Chlorobium tepidum TLS, complete genome	52	0.002
259	gb|AF180558.1|AF180558 Viscum album subsp. album haplotype G chl...	52	0.002
260	gb|AF180557.1|AF180557 Viscum album subsp. austriacum haplotype ...	52	0.002
261	gb|AF180556.1|AF180556 Viscum album subsp. austriacum haplotype ...	52	0.002
262	gb|AF180555.1|AF180555 Viscum album subsp. album haplotype H chl...	52	0.002
263	gb|AF180554.1|AF180554 Viscum album subsp. album haplotype F chl...	52	0.002
264	gb|AF180552.1|AF180552 Viscum album subsp. abietis haplotype B c...	52	0.002
265	gb|AF180551.1|AF180551 Viscum album subsp. abietis haplotype A c...	52	0.002
266	dbj|AP003143.2| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
267	gb|AE001439.1| Helicobacter pylori J99, complete genome	52	0.002
268	emb|AM085629.1| Minuartia biflora chloroplast psbZ gene for phot...	52	0.002
269	emb|AM085628.1| Minuartia biflora chloroplast psbZ gene for phot...	52	0.002
270	emb|AM085627.1| Minuartia biflora chloroplast psbZ gene for phot...	52	0.002
271	emb|AM085626.1| Minuartia biflora chloroplast psbZ gene for phot...	52	0.002
272	emb|AM085625.1| Minuartia biflora chloroplast psbZ gene for phot...	52	0.002
273	gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome	52	0.002
274	gb|AE000511.1| Helicobacter pylori 26695, complete genome	52	0.002
275	gb|M94625.1|PTECPTRA Porphyra umbilicalis chloroplast transfer R...	52	0.002
276	dbj|AB020796.2| Tsuga diversifolia chloroplast DNA, trnS, psaM a...	52	0.002
277	dbj|AB020795.1| Tsuga diversifolia chloroplast DNA, pseudo-trnG,...	52	0.002
278	gb|AY958085.1| Staurastrum punctulatum chloroplast, complete genome	50	0.007
279	gb|CP000110.1| Synechococcus sp. CC9605, complete genome	50	0.007
280	gb|CP000097.1| Synechococcus sp. CC9902, complete genome	50	0.007
281	gb|AE006134.1| Pasteurella multocida subsp. multocida str. Pm70 ...	50	0.007
282	gb|AE012978.1| Thermoanaerobacter tengcongensis MB4, section 5 o...	50	0.007
283	gb|DQ396875.1| Scenedesmus obliquus strain UTEX 393 chloroplast,...	50	0.007
284	gb|CP000051.1| Chlamydia trachomatis A/HAR-13, complete genome	50	0.007
285	gb|CP000238.1| Baumannia cicadellinicola str. Hc (Homalodisca co...	50	0.007
286	emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ...	50	0.007
287	emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chrom...	50	0.007
288	emb|X16571.1|CHPMSER P.menziesii chloroplast DNA for tRNA-Ser an...	50	0.007
289	emb|CR543861.1| Acinetobacter sp. ADP1 complete genome	50	0.007
290	gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome	50	0.007
291	emb|BX572097.1| Prochlorococcus marinus MIT9313 complete genome;...	50	0.007
292	emb|BX569692.1| Synechococcus sp. WH8102 complete genome; segmen...	50	0.007
293	emb|AJ250120.1|FHY250120 Funaria hygrometrica rps 4 gene for sma...	50	0.007
294	dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c...	50	0.007
295	gb|AE011806.1| Xanthomonas axonopodis pv. citri str. 306, secti...	50	0.007
296	gb|AY835431.1| Pseudendoclonium akinetum chloroplast, complete g...	50	0.007
297	gb|AE012274.1| Xanthomonas campestris pv. campestris str. ATCC 3...	50	0.007
298	dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g...	50	0.007
299	gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome	50	0.007
300	gb|AE002160.2| Chlamydia muridarum Nigg, complete genome	50	0.007
301	gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde...	50	0.007
302	gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ...	50	0.007
303	gb|AF130454.1|AF130454 Xylella fastidiosa tRNA-Ser gene, complet...	50	0.007
304	gb|AY055382.1| Salmonella typhimurium phage ST64B complete sequence	50	0.007
305	tpg|BK000554.2| TPA: TPA_inf: Chlamydomonas reinhardtii chloropl...	50	0.007
306	gb|AF180553.1|AF180553 Viscum album subsp. album haplotype E chl...	50	0.007
307	gb|AE001273.1| Chlamydia trachomatis D/UW-3/CX, complete genome	50	0.007
308	dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete...	50	0.007
309	dbj|AB001684.1| Chlorella vulgaris C-27 chloroplast DNA, complet...	50	0.007
310	gb|CP000021.1| Vibrio fischeri ES114 chromosome II, complete seq...	50	0.007
311	gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequ...	50	0.007
312	gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete...	50	0.007
313	gb|AE015927.1| Clostridium tetani E88, complete genome	50	0.007
314	gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1...	50	0.007
315	gb|AE000520.1| Treponema pallidum subsp. pallidum str. Nichols c...	50	0.007
316	gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome	50	0.007
317	gb|AE015925.1| Chlamydophila caviae GPIC, complete genome	50	0.007
318	gb|AE017226.1| Treponema denticola ATCC 35405, complete genome	50	0.007
319	dbj|BA000021.3| Wigglesworthia glossinidia endosymbiont of Gloss...	50	0.007
320	dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp...	50	0.007
321	gb|L20417.1|PSOTRNAB Pseudotsuga menziesii transfer RNA-Asp, tra...	50	0.007
322	gb|L20418.1|PSOTRNAC Pseudotsuga japonica transfer RNA-Asp, tran...	50	0.007
323	gb|L20416.1|PSOTRNAA Pseudotsuga menziesii transfer RNA-Asp, tra...	50	0.007
324	gb|U40346.1|CRU40346 Chlamydomonas reinhardtii tRNA-Ser(GCU) gen...	50	0.007
325	gb|DQ163457.1| Candidatus Hamiltonella defensa clone P090090 gen...	50	0.007
326	gb|DQ163446.1| Candidatus Hamiltonella defensa clone P090069 gen...	50	0.007
327	gb|U30821.1|CPU30821 Cyanophora paradoxa cyanelle, complete genome	50	0.007
328	emb|X51421.1|CYCPTRNA Cyanophora paradoxa cyanelle DNA for tRNA ...	50	0.007
329	emb|X07924.1|CPTRNS Cyanophora paradoxa plastid gene for transfe...	50	0.007
330	gb|M20965.1|MPOCPTRSB Liverwort chloroplast Ser-tRNA-gga	50	0.007
331	gb|M20964.1|MPOCPTRSA Liverwort chloroplast Ser-tRNA-gct	50	0.007
332	gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome	50	0.007
333	dbj|AB020794.1| Abies sachalinensis chloroplast DNA, trnS, psaM ...	50	0.007
334	dbj|AB020793.1| Abies sachalinensis chloroplast DNA, pseudo-trnG...	50	0.007
335	dbj|AB020792.1| Abies mariesii chloroplast DNA, trnS, psaM and t...	50	0.007
336	dbj|AB020791.1| Abies mariesii chloroplast DNA, pseudo-trnG, psa...	50	0.007
337	dbj|AB020790.1| Abies homolepis chloroplast DNA, trnS, psaM and ...	50	0.007
338	dbj|AB020789.1| Abies homolepis chloroplast DNA, pseudo-trnG, ps...	50	0.007
339	dbj|AB020788.1| Abies veitchii chloroplast DNA, trnS, psaM and t...	50	0.007
340	dbj|AB020787.1| Abies veitchii chloroplast DNA, pseudo-trnG, psa...	50	0.007
341	dbj|AB020786.1| Abies firma chloroplast DNA, trnS, psaM and trnG...	50	0.007
342	dbj|AB020785.1| Abies firma chloroplast DNA, pseudo-trnG, psaM a...	50	0.007
343	dbj|D29968.1|SYODNAK3 Synechococcus sp. dnaK3 gene for heat shoc...	50	0.007
344	gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete ...	48	0.029
345	gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete g...	48	0.029
346	gb|AE006147.1| Pasteurella multocida subsp. multocida str. Pm70 ...	48	0.029
347	gb|DQ398104.1| Helicosporidium sp. ex Simulium jonesii plastid, ...	48	0.029
348	gb|AY337645.1| Martellidendron kariangensis isolate Sp_3 chlorop...	48	0.029
349	gb|CP000284.1| Methylobacillus flagellatus KT, complete genome	48	0.029
350	gb|DQ115870.1| Cyanobacteria phage AS-1 contig_63 genomic sequence	48	0.029
351	emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete...	48	0.029
352	emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome	48	0.029
353	emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, comple...	48	0.029
354	emb|BX571863.1| Photorhabdus luminescens subsp. laumondii TTO1 c...	48	0.029
355	dbj|AB206607.1| Pieris formosa chloroplast DNA, trnS-trnfM inter...	48	0.029
356	dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ...	48	0.029
357	gb|CP000237.1| Neorickettsia sennetsu strain Miyayama, complete ...	48	0.029
358	gb|AE016826.1| Buchnera aphidicola str. Bp (Baizongia pistaciae)...	48	0.029
359	gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome	48	0.029
360	gb|AE013218.1| Buchnera aphidicola str. Sg (Schizaphis graminum)...	48	0.029
361	dbj|BA000003.2| Buchnera aphidicola str. APS (Acyrthosiphon pisu...	48	0.029
362	dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ...	48	0.029
363	dbj|AB116593.1| Cycas panzhihuaensis chloroplast DNA, intergenic...	48	0.029
364	dbj|AB116592.1| Cycas taitungensis chloroplast DNA, intergenic s...	48	0.029
365	dbj|AB101678.2| Cycas revoluta chloroplast gene for tRNA-Ser, in...	48	0.029
366	dbj|AB100596.2| Cycas revoluta chloroplast gene for tRNA-Ser, in...	48	0.029
367	gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge...	48	0.029
368	gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete...	48	0.029
369	gb|L42023.1| Haemophilus influenzae Rd KW20, complete genome	48	0.029
370	emb|AL591782.1|SME591782 Sinorhizobium meliloti 1021 complete ch...	48	0.029
371	dbj|AB038354.1| Methylobacillus glycogenes genes for Ala-tRNA sy...	48	0.029
372	gb|AY787792.1| Photobacterium phosphoreum beta-lactamase (ampC) ...	46	0.11
373	gb|AC167537.7| Mus musculus chromosome 8, clone RP23-99B10, comp...	46	0.11
374	gb|AC134443.3| Mus musculus BAC clone RP24-107B13 from chromosom...	46	0.11
375	emb|CR555306.1| Azoarcus sp. EbN1 complete genome	46	0.11
376	dbj|AB206609.1| Pieris floribunda chloroplast DNA, trnS-trnfM in...	46	0.11
377	dbj|AB206608.1| Pieris phillyreifolia chloroplast DNA, trnS-trnf...	46	0.11
378	dbj|AB206606.1| Pieris formosa var. forrestii chloroplast DNA, t...	46	0.11
379	dbj|AB206605.1| Pieris taiwanensis chloroplast DNA, trnS-trnfM i...	46	0.11
380	dbj|AB206604.1| Pieris koidzumiana chloroplast DNA, trnS-trnfM i...	46	0.11
381	dbj|AB206603.1| Pieris koidzumiana chloroplast DNA, trnS-trnfM i...	46	0.11
382	dbj|AB206602.1| Pieris japonica var. yakushimensis chloroplast D...	46	0.11
383	dbj|AB206601.1| Pieris japonica chloroplast DNA, trnS-trnfM inte...	46	0.11
384	dbj|D10997.1|CHLC27 Chlorella ellipsoidea rbcL, rps14, trnM, trn...	46	0.11
385	gb|AF166114.1|AF166114 Mesostigma viride chloroplast DNA, comple...	46	0.11
386	gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malay...	46	0.11
387	gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster...	46	0.11
388	gb|AC168046.7| Mus musculus chromosome 8, clone RP24-335A7, comp...	46	0.11
389	gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome	44	0.45
390	gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome	44	0.45
391	gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome	44	0.45
392	gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome	44	0.45
393	gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl...	44	0.45
394	gb|AC161808.8| Mus musculus chromosome 5, clone RP24-386J15, com...	44	0.45
395	gb|AY673996.1| Gracilaria tenuistipitata var. liui chloroplast, ...	44	0.45
396	gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome	44	0.45
397	gb|AY396187.1| Luffa graveolens photosystem II protein (psbC) ge...	44	0.45
398	gb|AY396186.1| Luffa echinata photosystem II protein (psbC) gene...	44	0.45
399	gb|AY396180.1| Luffa quinquefida photosystem II protein (psbC) g...	44	0.45
400	gb|CP000114.1| Streptococcus agalactiae A909, complete genome	44	0.45
401	gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome	44	0.45
402	gb|AY337658.1| Freycinetia funicularis isolate Sp_16 chloroplast...	44	0.45
403	gb|AY337657.1| Freycinetia angustissima isolate Sp_15 chloroplas...	44	0.45
404	gb|AY337656.1| Freycinetia javanica isolate Sp_14 chloroplast tr...	44	0.45
405	gb|AY337655.1| Freycinetia cumingiana isolate Sp_13 chloroplast ...	44	0.45
406	gb|DQ366745.1| Uncultured Prochlorococcus marinus clone HOT0M-9F...	44	0.45
407	gb|DQ366741.1| Uncultured Prochlorococcus marinus clone HOT0M-8C...	44	0.45
408	gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome	44	0.45
409	gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome	44	0.45
410	gb|AE014202.1| Streptococcus agalactiae 2603V/R section 12 of 10...	44	0.45
411	gb|AE014195.1| Streptococcus agalactiae 2603V/R section 5 of 100...	44	0.45
412	emb|Z83933.1|CVZ83933 Chlorobium vibrioforme 15 kb genomic DNA f...	44	0.45
413	emb|CR378671.1| Photobacterium profundum SS9; segment 9/12	44	0.45
414	emb|BX842646.1| Bdellovibrio bacteriovorus complete genome, stra...	44	0.45
415	emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genom...	44	0.45
416	emb|BX572100.1| Prochlorococcus marinus MIT9313 complete genome;...	44	0.45
417	emb|BX572094.1| Prochlorococcus marinus MED4 complete genome; se...	44	0.45
418	emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segmen...	44	0.45
419	emb|AL766844.1|SAG766844 Streptococcus agalactiae NEM316 complet...	44	0.45
420	emb|AL766843.1|SAG766843 Streptococcus agalactiae NEM316 complet...	44	0.45
421	emb|AJ294725.1|ALO294725 Astasia longa complete chloroplast genome	44	0.45
422	emb|AJ251066.1|JAU251066 Jamesoniella autumnalis rps4 gene for s...	44	0.45
423	emb|AJ250183.1|SSP250183 Splachnum sphaericum rps4 gene for smal...	44	0.45
424	emb|AJ250181.1|PAD250181 Plagiochila adiantoides rps4 gene for s...	44	0.45
425	gb|AF330621.1| Helicobacter bizzozeronii tRNA ribosyltransferase...	44	0.45
426	gb|AC120367.8| Mus musculus chromosome 7, clone RP24-325B21, com...	44	0.45
427	dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co...	44	0.45
428	gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome	44	0.45
429	gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome	44	0.45
430	gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome	44	0.45
431	gb|AF302131.1| Streptococcus agalactiae strain L48 23S ribosomal...	44	0.45
432	gb|AF302130.1| Streptococcus agalactiae strain L41 23S ribosomal...	44	0.45
433	dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, co...	44	0.45
434	gb|AC007729.3| Arabidopsis thaliana chromosome 2 BAC T18C6 genom...	44	0.45
435	gb|AC006225.3| Arabidopsis thaliana chromosome 2 BAC T5E7 genomi...	44	0.45
436	gb|AF401669.1| Lactobacillus sakei rrnG operon, partial sequence...	44	0.45
437	dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticu...	44	0.45
438	gb|AE008452.1|AE008452 Streptococcus pneumoniae R6 section 68 of...	44	0.45
439	gb|AC008218.5| Drosophila melanogaster, chromosome 3R, region 99...	44	0.45
440	gb|AC132139.4| Mus musculus BAC clone RP23-181A24 from chromosom...	44	0.45
441	gb|AY734696.1| Jensenia spinosa small ribosomal protein 4 (rps4)...	44	0.45
442	gb|AY734695.1| Jensenia decipiens small ribosomal protein 4 (rps...	44	0.45
443	gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome	44	0.45
444	gb|AC007856.7|AC007856 Drosophila melanogaster, chromosome 3R, r...	44	0.45
445	gb|AF285760.1|AF285760 Staphylococcus aureus enterotoxin gene cl...	44	0.45
446	gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome	44	0.45
447	dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge...	44	0.45
448	dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome	44	0.45
449	dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic...	44	0.45
450	gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome	44	0.45
451	emb|CR936503.1| Lactobacillus sakei strain 23K complete genome	44	0.45
452	emb|Y08501.2|MIATGENA Arabidopsis thaliana mitochondrial genome	44	0.45
453	emb|CT573019.12| Mouse DNA sequence from clone RP24-94G12 on chr...	44	0.45
454	gb|AE003770.2| Drosophila melanogaster chromosome 3R, section 10...	44	0.45
455	emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA2...	44	0.45
456	dbj|AB031215.1| Bacillus halodurans ygaG, orf, ygxA, rrnH-16S, r...	44	0.45
457	gb|AE015924.1| Porphyromonas gingivalis W83, complete genome	44	0.45
458	gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete g...	44	0.45
459	dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome	44	0.45
460	dbj|AP006444.1| Brassica napus mitochondrial DNA, complete genome	44	0.45
461	gb|AC172860.1| Brassica rapa subsp. pekinensis clone KBrB042G11,...	44	0.45
462	gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete ge...	44	0.45
463	gb|M36833.1|SPICPCHLA Spinach chloroplast 44 kD chlorophyII alph...	44	0.45
464	gb|M37111.1|CPACYNADA Cyanophora paradoxa cyanelle quinolinate s...	44	0.45
465	gb|M58320.1|ATHMTSA Arabidopsis thaliana mitochondrial Ser-tRNA-...	44	0.45
466	gb|AC110907.7| Mus musculus chromosome 7, clone RP24-180J10, com...	42	1.8
467	gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete...	42	1.8
468	gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence	42	1.8
469	gb|AE017128.1| Yersinia pestis biovar Medievalis str. 91001 sect...	42	1.8
470	gb|AF137379.1| Nephroselmis olivacea chloroplast DNA, complete g...	42	1.8
471	gb|AE017134.1| Yersinia pestis biovar Medievalis str. 91001 sect...	42	1.8
472	gb|AC157598.4| Mus musculus BAC clone RP23-193D3 from chromosome...	42	1.8
473	gb|AC148876.2| Pan troglodytes BAC clone CH251-50I16 from Y, com...	42	1.8
474	gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome	42	1.8
475	gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co...	42	1.8
476	gb|AC146453.3| Pan troglodytes BAC clone CH251-510F17 from Y, co...	42	1.8
477	gb|AC147675.2| Pan troglodytes BAC clone CH251-6P20 from Y, comp...	42	1.8
478	gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome	42	1.8
479	gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl...	42	1.8
480	gb|AE009952.1| Yersinia pestis KIM, complete genome	42	1.8
481	gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete...	42	1.8
482	gb|BT013543.1| Lycopersicon esculentum clone 132263F, mRNA sequence	42	1.8
483	gb|BT013143.1| Lycopersicon esculentum clone 134137F, mRNA sequence	42	1.8
484	gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple...	42	1.8
485	gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp...	42	1.8
486	gb|AY337660.1| Sararanga sinuosa isolate Sp_18 chloroplast trnS-...	42	1.8
487	gb|AY337654.1| Martellidendron hornei isolate Sp_12 chloroplast ...	42	1.8
488	gb|AY337653.1| Pandanus palustris isolate Sp_11 chloroplast trnS...	42	1.8
489	gb|AY337652.1| Martellidendron hornei isolate Sp_10 chloroplast ...	42	1.8
490	gb|AY337647.1| Martellidendron gallinarum isolate Sp_5 chloropla...	42	1.8
491	gb|AY337646.1| Martellidendron cruciatum isolate Sp_4 chloroplas...	42	1.8
492	gb|AC122252.4| Mus musculus BAC clone RP23-170E7 from chromosome...	42	1.8
493	emb|Z75532.1|CEC54G10 Caenorhabditis elegans Cosmid C54G10, comp...	42	1.8
494	gb|AY245599.1| Macaranga bancana specimen-voucher 283 chloroplas...	42	1.8
495	gb|AY245598.1| Macaranga angulata specimen-voucher 497 chloropla...	42	1.8
496	gb|AY245597.1| Macaranga glandibracteolata specimen-voucher 499 ...	42	1.8
497	gb|AY245596.1| Macaranga depressa specimen-voucher 291 chloropla...	42	1.8
498	gb|AY245595.1| Macaranga motleyana specimen-voucher 127 chloropl...	42	1.8
499	gb|AY245594.1| Macaranga indistincta specimen-voucher 288 chloro...	42	1.8
500	gb|AY245593.1| Macaranga depressa specimen-voucher 177 chloropla...	42	1.8

---

>gb|U37703.1|HVU37703 Hordeum vulgare ORF 62 mRNA, chloroplast gene, encoding chloroplast
           protein, complete cds
          Length = 697

 Score =  438 bits (221), Expect = e-120
 Identities = 245/257 (95%)
 Strand = Plus / Plus

                                                                       
Query: 267 ccttattttactcctacaaatagaacatagccatatnnnnnnnnnnnntatttattaacc 326
           ||||||||||||||||||||||||||||||||||||            ||||||||||||
Sbjct: 1   ccttattttactcctacaaatagaacatagccatataaaaaataaaaatatttattaacc 60

                                                                       
Query: 327 tctagaaagatatcagatacaagttccttttcgatatatctctgtatactgtatacacgg 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tctagaaagatatcagatacaagttccttttcgatatatctctgtatactgtatacacgg 120

                                                                       
Query: 387 atacaggatccgctatacccgcttgtgaaataaagactaaataacctcctctcaccccca 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atacaggatccgctatacccgcttgtgaaataaagactaaataacctcctctcaccccca 180

                                                                       
Query: 447 tatccaaataaaaaagaggttaagtaataaattttaattaaagagaagaatcaatggatt 506
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tatccaaataaaaaagaggttaagtaataaattttaattaaagagaagaatcaatggatt 240

                            
Query: 507 catgattaaacccctcc 523
           |||||||||||||||||
Sbjct: 241 catgattaaacccctcc 257

---

>dbj|AB027572.1| Triticum aestivum chloroplast DNA, 21.1-kb fragment bearing RNA
           polymerase subunit (rpo) genes
          Length = 21245

 Score =  351 bits (177), Expect = 1e-93
 Identities = 202/209 (96%), Gaps = 1/209 (0%)
 Strand = Plus / Plus

                                                                       
Query: 316 atttattaacctctagaaagatatcagatacaagttccttttcgatatatctctgtatac 375
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atttattagcctctagaaagatatcagatacaagttccttttcgatatatctctgtatac 425

                                                                       
Query: 376 tgtatacacggatacaggatccgctatacccgcttgtgaaataaagactaaataacctcc 435
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| 
Sbjct: 426 tgtatacacggatacaggatccgctatacccgcttgtgaaataaagagtaaataatctct 485

                                                                       
Query: 436 tctcacccccatatccaaataaaaaagagg-ttaagtaataaattttaattaaagagaag 494
           ||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct: 486 tctcacccccatatccaaataaaaaagcggtttaagtaataaatttgaattaaagagaag 545

                                        
Query: 495 aatcaatggattcatgattaaacccctcc 523
           |||||||||||||||||||||||||||||
Sbjct: 546 aatcaatggattcatgattaaacccctcc 574



 Score =  309 bits (156), Expect = 5e-81
 Identities = 162/164 (98%)
 Strand = Plus / Plus

                                                                       
Query: 139 tgaaagaaacaaacgtattcaataagcaaaaggagagagagggattcgaaccctcgatag 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tgaaagaaacaaacgtattcaataagcaaaaggagagagagggattcgaaccctcgatag 248

                                                                       
Query: 199 ttcctagaactataccggttttcaagaccggagctatcaaccactcagctatctctccac 258
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 249 ttcctagaactataccggttttcaagaccggagctatcaaccactcagccatctctccac 308

                                                       
Query: 259 cgcctaatccttattttactcctacaaatagaacatagccatat 302
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agcctaatccttattttactcctacaaatagaacatagccatat 352



 Score =  184 bits (93), Expect = 2e-43
 Identities = 117/126 (92%), Gaps = 1/126 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   acatgaaccctcttaactaagnattttcttatttatacctgttctacnnnnnnnctgttc 61
           ||||||||||||||||||||| |||||||||||||||||||||||||       ||||||
Sbjct: 52  acatgaaccctcttaactaag-attttcttatttatacctgttctactttttttctgttc 110

                                                                       
Query: 62  tggctcggttattctatctagccgagccattcattcctttttatgaaagaaagataaggg 121
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 tggctcggttattccatctagccgagccattcattcctttttatgaaagaaagataaggg 170

                 
Query: 122 acagaa 127
           ||||||
Sbjct: 171 acagaa 176

---

>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome
          Length = 134545

 Score =  351 bits (177), Expect = 1e-93
 Identities = 202/209 (96%), Gaps = 1/209 (0%)
 Strand = Plus / Plus

                                                                         
Query: 316   atttattaacctctagaaagatatcagatacaagttccttttcgatatatctctgtatac 375
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11720 atttattagcctctagaaagatatcagatacaagttccttttcgatatatctctgtatac 11779

                                                                         
Query: 376   tgtatacacggatacaggatccgctatacccgcttgtgaaataaagactaaataacctcc 435
             ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| 
Sbjct: 11780 tgtatacacggatacaggatccgctatacccgcttgtgaaataaagagtaaataatctct 11839

                                                                         
Query: 436   tctcacccccatatccaaataaaaaagagg-ttaagtaataaattttaattaaagagaag 494
             ||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct: 11840 tctcacccccatatccaaataaaaaagcggtttaagtaataaatttgaattaaagagaag 11899

                                          
Query: 495   aatcaatggattcatgattaaacccctcc 523
             |||||||||||||||||||||||||||||
Sbjct: 11900 aatcaatggattcatgattaaacccctcc 11928



 Score =  309 bits (156), Expect = 5e-81
 Identities = 162/164 (98%)
 Strand = Plus / Plus

                                                                         
Query: 139   tgaaagaaacaaacgtattcaataagcaaaaggagagagagggattcgaaccctcgatag 198
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11543 tgaaagaaacaaacgtattcaataagcaaaaggagagagagggattcgaaccctcgatag 11602

                                                                         
Query: 199   ttcctagaactataccggttttcaagaccggagctatcaaccactcagctatctctccac 258
             ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 11603 ttcctagaactataccggttttcaagaccggagctatcaaccactcagccatctctccac 11662

                                                         
Query: 259   cgcctaatccttattttactcctacaaatagaacatagccatat 302
              |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11663 agcctaatccttattttactcctacaaatagaacatagccatat 11706



 Score =  184 bits (93), Expect = 2e-43
 Identities = 117/126 (92%), Gaps = 1/126 (0%)
 Strand = Plus / Plus

                                                                         
Query: 2     acatgaaccctcttaactaagnattttcttatttatacctgttctacnnnnnnnctgttc 61
             ||||||||||||||||||||| |||||||||||||||||||||||||       ||||||
Sbjct: 11406 acatgaaccctcttaactaag-attttcttatttatacctgttctactttttttctgttc 11464

                                                                         
Query: 62    tggctcggttattctatctagccgagccattcattcctttttatgaaagaaagataaggg 121
             |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11465 tggctcggttattccatctagccgagccattcattcctttttatgaaagaaagataaggg 11524

                   
Query: 122   acagaa 127
             ||||||
Sbjct: 11525 acagaa 11530



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 45120 agagagggattcgaaccctcg 45100



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 7913 agagagggattcgaaccctcg 7933

---

>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast,
             complete genome
          Length = 134551

 Score =  254 bits (128), Expect = 3e-64
 Identities = 137/140 (97%)
 Strand = Plus / Plus

                                                                         
Query: 162   aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 221
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11498 aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 11557

                                                                         
Query: 222   aagaccggagctatcaaccactcagctatctctccaccgcctaatccttattttactcct 281
             |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 11558 aagaccggagctatcaaccactcagccatctctccacagcctaatccttattttattcct 11617

                                 
Query: 282   acaaatagaacatagccata 301
             ||||||||||||||||||||
Sbjct: 11618 acaaatagaacatagccata 11637



 Score =  165 bits (83), Expect = 2e-37
 Identities = 174/202 (86%), Gaps = 8/202 (3%)
 Strand = Plus / Plus

                                                                         
Query: 322   taacctctagaaagatatcagatacaagttccttttcgatatatctctgtatactgtata 381
             ||||||||||||| || ||| |||||| | |||||||||||||| |||||||||||||| 
Sbjct: 11651 taacctctagaaacatctcaaatacaaatcccttttcgatatatttctgtatactgtatc 11710

                                                                         
Query: 382   cacggatacaggatccgctatacccgcttgtgaaataaagactaaataacctcctctcac 441
             || | ||||||||||||||||| |||||||||||||||||  |||  |||  || |||| 
Sbjct: 11711 catgtatacaggatccgctatatccgcttgtgaaataaagcataa--aac--cccctcaa 11766

                                                                         
Query: 442   ccccatatccaaataaaaaagaggttaagtaataaattttaattaaagagaagaatcaat 501
             ||||||||||||||||||||   | | |||||||| ||    ||||||||||||||||||
Sbjct: 11767 ccccatatccaaataaaaaaagtggtgagtaataagtt----ttaaagagaagaatcaat 11822

                                   
Query: 502   ggattcatgattaaacccctcc 523
             ||||||||||||||||||||||
Sbjct: 11823 ggattcatgattaaacccctcc 11844



 Score =  147 bits (74), Expect = 4e-32
 Identities = 110/122 (90%), Gaps = 3/122 (2%)
 Strand = Plus / Plus

                                                                         
Query: 2     acatgaaccctcttaactaagnattttcttatttatacctgttctacnnnnnnn--ctgt 59
             |||||| |||||||||||||| |||||||||||||||||||||||||         ||||
Sbjct: 11313 acatgacccctcttaactaag-attttcttatttatacctgttctactgtttttttctgt 11371

                                                                         
Query: 60    tctggctcggttattctatctagccgagccattcattcctttttatgaaagaaagataag 119
             |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 11372 tctggctcggttattctatctagccgagccattcattcctttctatgaaagaaagataag 11431

               
Query: 120   gg 121
             ||
Sbjct: 11432 gg 11433



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                    
Query: 141   aaagaaacaaacgtattcaataagcaaaaggagagagag 179
             |||||||||||||||||||||| ||||||| | ||||||
Sbjct: 11455 aaagaaacaaacgtattcaatacgcaaaagaaaagagag 11493



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 44511 agagagggattcgaaccctcg 44491



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 7835 agagagggattcgaaccctcg 7855

---

>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast,
             complete genome
          Length = 134551

 Score =  254 bits (128), Expect = 3e-64
 Identities = 137/140 (97%)
 Strand = Plus / Plus

                                                                         
Query: 162   aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 221
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11498 aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 11557

                                                                         
Query: 222   aagaccggagctatcaaccactcagctatctctccaccgcctaatccttattttactcct 281
             |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 11558 aagaccggagctatcaaccactcagccatctctccacagcctaatccttattttattcct 11617

                                 
Query: 282   acaaatagaacatagccata 301
             ||||||||||||||||||||
Sbjct: 11618 acaaatagaacatagccata 11637



 Score =  165 bits (83), Expect = 2e-37
 Identities = 174/202 (86%), Gaps = 8/202 (3%)
 Strand = Plus / Plus

                                                                         
Query: 322   taacctctagaaagatatcagatacaagttccttttcgatatatctctgtatactgtata 381
             ||||||||||||| || ||| |||||| | |||||||||||||| |||||||||||||| 
Sbjct: 11651 taacctctagaaacatctcaaatacaaatcccttttcgatatatttctgtatactgtatc 11710

                                                                         
Query: 382   cacggatacaggatccgctatacccgcttgtgaaataaagactaaataacctcctctcac 441
             || | ||||||||||||||||| |||||||||||||||||  |||  |||  || |||| 
Sbjct: 11711 catgtatacaggatccgctatatccgcttgtgaaataaagcataa--aac--cccctcaa 11766

                                                                         
Query: 442   ccccatatccaaataaaaaagaggttaagtaataaattttaattaaagagaagaatcaat 501
             ||||||||||||||||||||   | | |||||||| ||    ||||||||||||||||||
Sbjct: 11767 ccccatatccaaataaaaaaagtggtgagtaataagtt----ttaaagagaagaatcaat 11822

                                   
Query: 502   ggattcatgattaaacccctcc 523
             ||||||||||||||||||||||
Sbjct: 11823 ggattcatgattaaacccctcc 11844



 Score =  147 bits (74), Expect = 4e-32
 Identities = 110/122 (90%), Gaps = 3/122 (2%)
 Strand = Plus / Plus

                                                                         
Query: 2     acatgaaccctcttaactaagnattttcttatttatacctgttctacnnnnnnn--ctgt 59
             |||||| |||||||||||||| |||||||||||||||||||||||||         ||||
Sbjct: 11313 acatgacccctcttaactaag-attttcttatttatacctgttctactgtttttttctgt 11371

                                                                         
Query: 60    tctggctcggttattctatctagccgagccattcattcctttttatgaaagaaagataag 119
             |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 11372 tctggctcggttattctatctagccgagccattcattcctttctatgaaagaaagataag 11431

               
Query: 120   gg 121
             ||
Sbjct: 11432 gg 11433



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                    
Query: 141   aaagaaacaaacgtattcaataagcaaaaggagagagag 179
             |||||||||||||||||||||| ||||||| | ||||||
Sbjct: 11455 aaagaaacaaacgtattcaatacgcaaaagaaaagagag 11493



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 44511 agagagggattcgaaccctcg 44491



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 7835 agagagggattcgaaccctcg 7855

---

>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast,
             complete genome
          Length = 134496

 Score =  254 bits (128), Expect = 3e-64
 Identities = 137/140 (97%)
 Strand = Plus / Plus

                                                                         
Query: 162   aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 221
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11435 aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 11494

                                                                         
Query: 222   aagaccggagctatcaaccactcagctatctctccaccgcctaatccttattttactcct 281
             |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 11495 aagaccggagctatcaaccactcagccatctctccacagcctaatccttattttattcct 11554

                                 
Query: 282   acaaatagaacatagccata 301
             ||||||||||||||||||||
Sbjct: 11555 acaaatagaacatagccata 11574



 Score =  165 bits (83), Expect = 2e-37
 Identities = 174/202 (86%), Gaps = 8/202 (3%)
 Strand = Plus / Plus

                                                                         
Query: 322   taacctctagaaagatatcagatacaagttccttttcgatatatctctgtatactgtata 381
             ||||||||||||| || ||| |||||| | |||||||||||||| |||||||||||||| 
Sbjct: 11588 taacctctagaaacatctcaaatacaaatcccttttcgatatatttctgtatactgtatc 11647

                                                                         
Query: 382   cacggatacaggatccgctatacccgcttgtgaaataaagactaaataacctcctctcac 441
             || | ||||||||||||||||| |||||||||||||||||  |||  |||  || |||| 
Sbjct: 11648 catgtatacaggatccgctatatccgcttgtgaaataaagcataa--aac--cccctcaa 11703

                                                                         
Query: 442   ccccatatccaaataaaaaagaggttaagtaataaattttaattaaagagaagaatcaat 501
             ||||||||||||||||||||   | | |||||||| ||    ||||||||||||||||||
Sbjct: 11704 ccccatatccaaataaaaaaagtggtgagtaataagtt----ttaaagagaagaatcaat 11759

                                   
Query: 502   ggattcatgattaaacccctcc 523
             ||||||||||||||||||||||
Sbjct: 11760 ggattcatgattaaacccctcc 11781



 Score =  147 bits (74), Expect = 4e-32
 Identities = 110/122 (90%), Gaps = 3/122 (2%)
 Strand = Plus / Plus

                                                                         
Query: 2     acatgaaccctcttaactaagnattttcttatttatacctgttctacnnnnnnn--ctgt 59
             |||||| |||||||||||||| |||||||||||||||||||||||||         ||||
Sbjct: 11250 acatgacccctcttaactaag-attttcttatttatacctgttctactgtttttttctgt 11308

                                                                         
Query: 60    tctggctcggttattctatctagccgagccattcattcctttttatgaaagaaagataag 119
             |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 11309 tctggctcggttattctatctagccgagccattcattcctttctatgaaagaaagataag 11368

               
Query: 120   gg 121
             ||
Sbjct: 11369 gg 11370



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                    
Query: 141   aaagaaacaaacgtattcaataagcaaaaggagagagag 179
             |||||||||||||||||||||| ||||||| | ||||||
Sbjct: 11392 aaagaaacaaacgtattcaatacgcaaaagaaaagagag 11430



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 44470 agagagggattcgaaccctcg 44450



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 7841 agagagggattcgaaccctcg 7861

---

>gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
              OSJNBa0034M22, complete sequence
          Length = 149435

 Score =  254 bits (128), Expect = 3e-64
 Identities = 137/140 (97%)
 Strand = Plus / Plus

                                                                          
Query: 162    aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 221
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142527 aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 142586

                                                                          
Query: 222    aagaccggagctatcaaccactcagctatctctccaccgcctaatccttattttactcct 281
              |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 142587 aagaccggagctatcaaccactcagccatctctccacagcctaatccttattttattcct 142646

                                  
Query: 282    acaaatagaacatagccata 301
              ||||||||||||||||||||
Sbjct: 142647 acaaatagaacatagccata 142666



 Score =  165 bits (83), Expect = 2e-37
 Identities = 174/202 (86%), Gaps = 8/202 (3%)
 Strand = Plus / Plus

                                                                          
Query: 322    taacctctagaaagatatcagatacaagttccttttcgatatatctctgtatactgtata 381
              ||||||||||||| || ||| |||||| | |||||||||||||| |||||||||||||| 
Sbjct: 142680 taacctctagaaacatctcaaatacaaatcccttttcgatatatttctgtatactgtatc 142739

                                                                          
Query: 382    cacggatacaggatccgctatacccgcttgtgaaataaagactaaataacctcctctcac 441
              || | ||||||||||||||||| |||||||||||||||||  |||  |||  || |||| 
Sbjct: 142740 catgtatacaggatccgctatatccgcttgtgaaataaagcataa--aac--cccctcaa 142795

                                                                          
Query: 442    ccccatatccaaataaaaaagaggttaagtaataaattttaattaaagagaagaatcaat 501
              ||||||||||||||||||||   | | |||||||| ||    ||||||||||||||||||
Sbjct: 142796 ccccatatccaaataaaaaaagtggtgagtaataagtt----ttaaagagaagaatcaat 142851

                                    
Query: 502    ggattcatgattaaacccctcc 523
              ||||||||||||||||||||||
Sbjct: 142852 ggattcatgattaaacccctcc 142873



 Score =  143 bits (72), Expect = 7e-31
 Identities = 110/123 (89%), Gaps = 4/123 (3%)
 Strand = Plus / Plus

                                                                          
Query: 2      acatgaaccctcttaactaagnattttcttatttatacctgttctacnnnnnnn---ctg 58
              |||||| |||||||||||||| |||||||||||||||||||||||||          |||
Sbjct: 142341 acatgacccctcttaactaag-attttcttatttatacctgttctactgttttttttctg 142399

                                                                          
Query: 59     ttctggctcggttattctatctagccgagccattcattcctttttatgaaagaaagataa 118
              ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 142400 ttctggctcggttattctatctagccgagccattcattcctttctatgaaagaaagataa 142459

                 
Query: 119    ggg 121
              |||
Sbjct: 142460 ggg 142462



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                     
Query: 141    aaagaaacaaacgtattcaataagcaaaaggagagagag 179
              ||||||||||| |||||||||| ||||||| | ||||||
Sbjct: 142484 aaagaaacaaatgtattcaatacgcaaaagaaaagagag 142522

---

>gb|AC130726.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone
            P0508G08, complete sequence
          Length = 141383

 Score =  254 bits (128), Expect = 3e-64
 Identities = 137/140 (97%)
 Strand = Plus / Plus

                                                                        
Query: 162  aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 221
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5614 aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 5673

                                                                        
Query: 222  aagaccggagctatcaaccactcagctatctctccaccgcctaatccttattttactcct 281
            |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 5674 aagaccggagctatcaaccactcagccatctctccacagcctaatccttattttattcct 5733

                                
Query: 282  acaaatagaacatagccata 301
            ||||||||||||||||||||
Sbjct: 5734 acaaatagaacatagccata 5753



 Score =  165 bits (83), Expect = 2e-37
 Identities = 174/202 (86%), Gaps = 8/202 (3%)
 Strand = Plus / Plus

                                                                        
Query: 322  taacctctagaaagatatcagatacaagttccttttcgatatatctctgtatactgtata 381
            ||||||||||||| || ||| |||||| | |||||||||||||| |||||||||||||| 
Sbjct: 5767 taacctctagaaacatctcaaatacaaatcccttttcgatatatttctgtatactgtatc 5826

                                                                        
Query: 382  cacggatacaggatccgctatacccgcttgtgaaataaagactaaataacctcctctcac 441
            || | ||||||||||||||||| |||||||||||||||||  |||  |||  || |||| 
Sbjct: 5827 catgtatacaggatccgctatatccgcttgtgaaataaagcataa--aac--cccctcaa 5882

                                                                        
Query: 442  ccccatatccaaataaaaaagaggttaagtaataaattttaattaaagagaagaatcaat 501
            ||||||||||||||||||||   | | |||||||| ||    ||||||||||||||||||
Sbjct: 5883 ccccatatccaaataaaaaaagtggtgagtaataagtt----ttaaagagaagaatcaat 5938

                                  
Query: 502  ggattcatgattaaacccctcc 523
            ||||||||||||||||||||||
Sbjct: 5939 ggattcatgattaaacccctcc 5960



 Score =  143 bits (72), Expect = 7e-31
 Identities = 110/123 (89%), Gaps = 4/123 (3%)
 Strand = Plus / Plus

                                                                        
Query: 2    acatgaaccctcttaactaagnattttcttatttatacctgttctacnnnnnnn---ctg 58
            |||||| |||||||||||||| |||||||||||||||||||||||||          |||
Sbjct: 5428 acatgacccctcttaactaag-attttcttatttatacctgttctactgttttttttctg 5486

                                                                        
Query: 59   ttctggctcggttattctatctagccgagccattcattcctttttatgaaagaaagataa 118
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 5487 ttctggctcggttattctatctagccgagccattcattcctttctatgaaagaaagataa 5546

               
Query: 119  ggg 121
            |||
Sbjct: 5547 ggg 5549



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                   
Query: 141  aaagaaacaaacgtattcaataagcaaaaggagagagag 179
            ||||||||||| |||||||||| ||||||| | ||||||
Sbjct: 5571 aaagaaacaaatgtattcaatacgcaaaagaaaagagag 5609

---

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  254 bits (128), Expect = 3e-64
 Identities = 137/140 (97%)
 Strand = Plus / Plus

                                                                            
Query: 162      aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 221
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34185274 aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 34185333

                                                                            
Query: 222      aagaccggagctatcaaccactcagctatctctccaccgcctaatccttattttactcct 281
                |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 34185334 aagaccggagctatcaaccactcagccatctctccacagcctaatccttattttattcct 34185393

                                    
Query: 282      acaaatagaacatagccata 301
                ||||||||||||||||||||
Sbjct: 34185394 acaaatagaacatagccata 34185413



 Score =  163 bits (82), Expect = 7e-37
 Identities = 173/201 (86%), Gaps = 8/201 (3%)
 Strand = Plus / Plus

                                                                            
Query: 322      taacctctagaaagatatcagatacaagttccttttcgatatatctctgtatactgtata 381
                ||||||||||||| || ||  |||||||| |||||||||||||| |||||||||||||| 
Sbjct: 34185427 taacctctagaaacatctcgaatacaagtcccttttcgatatatttctgtatactgtatc 34185486

                                                                            
Query: 382      cacggatacaggatccgctatacccgcttgtgaaataaagactaaataacctcctctcac 441
                || | ||||||||||||||||| |||||||||||||||||  |||  |||  || |||| 
Sbjct: 34185487 catgtatacaggatccgctatatccgcttgtgaaataaagcataa--aac--cccctcaa 34185542

                                                                            
Query: 442      ccccatatccaaataaaaaagaggttaagtaataaattttaattaaagagaagaatcaat 501
                ||||||||||||||||||||   | | |||||||| ||    ||||||||||||||||||
Sbjct: 34185543 ccccatatccaaataaaaaaagtggtgagtaataagtt----ttaaagagaagaatcaat 34185598

                                     
Query: 502      ggattcatgattaaacccctc 522
                |||||||||||||||||||||
Sbjct: 34185599 ggattcatgattaaacccctc 34185619



 Score =  115 bits (58), Expect = 1e-22
 Identities = 64/66 (96%)
 Strand = Plus / Plus

                                                                            
Query: 56       ctgttctggctcggttattctatctagccgagccattcattcctttttatgaaagaaaga 115
                |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 34185142 ctgttctggctcgggtattctatctagccgagccattcattcctttctatgaaagaaaga 34185201

                      
Query: 116      taaggg 121
                ||||||
Sbjct: 34185202 taaggg 34185207



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                            
Query: 322      taacctctagaaagatatcagatacaagttccttttcgatatatctctgtatactgtata 381
                ||||||||||||| || ||| |||||| | |||||||||||||| ||| |||||||||| 
Sbjct: 35299731 taacctctagaaacatctcaaatacaaatcccttttcgatatatttctatatactgtatc 35299790

                                      
Query: 382      cacggatacaggatccgctata 403
                || | |||||||||||||||||
Sbjct: 35299791 catgtatacaggatccgctata 35299812



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                       
Query: 141      aaagaaacaaacgtattcaataagcaaaaggagagagag 179
                |||||||||||||||||||||| ||||||| | ||||||
Sbjct: 34185229 aaagaaacaaacgtattcaatacgcaaaagaaaagagag 34185267

---

>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome
          Length = 134525

 Score =  254 bits (128), Expect = 3e-64
 Identities = 137/140 (97%)
 Strand = Plus / Plus

                                                                         
Query: 162   aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 221
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11496 aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 11555

                                                                         
Query: 222   aagaccggagctatcaaccactcagctatctctccaccgcctaatccttattttactcct 281
             |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 11556 aagaccggagctatcaaccactcagccatctctccacagcctaatccttattttattcct 11615

                                 
Query: 282   acaaatagaacatagccata 301
             ||||||||||||||||||||
Sbjct: 11616 acaaatagaacatagccata 11635



 Score =  165 bits (83), Expect = 2e-37
 Identities = 174/202 (86%), Gaps = 8/202 (3%)
 Strand = Plus / Plus

                                                                         
Query: 322   taacctctagaaagatatcagatacaagttccttttcgatatatctctgtatactgtata 381
             ||||||||||||| || ||| |||||| | |||||||||||||| |||||||||||||| 
Sbjct: 11649 taacctctagaaacatctcaaatacaaatcccttttcgatatatttctgtatactgtatc 11708

                                                                         
Query: 382   cacggatacaggatccgctatacccgcttgtgaaataaagactaaataacctcctctcac 441
             || | ||||||||||||||||| |||||||||||||||||  |||  |||  || |||| 
Sbjct: 11709 catgtatacaggatccgctatatccgcttgtgaaataaagcataa--aac--cccctcaa 11764

                                                                         
Query: 442   ccccatatccaaataaaaaagaggttaagtaataaattttaattaaagagaagaatcaat 501
             ||||||||||||||||||||   | | |||||||| ||    ||||||||||||||||||
Sbjct: 11765 ccccatatccaaataaaaaaagtggtgagtaataagtt----ttaaagagaagaatcaat 11820

                                   
Query: 502   ggattcatgattaaacccctcc 523
             ||||||||||||||||||||||
Sbjct: 11821 ggattcatgattaaacccctcc 11842



 Score =  147 bits (74), Expect = 4e-32
 Identities = 110/122 (90%), Gaps = 3/122 (2%)
 Strand = Plus / Plus

                                                                         
Query: 2     acatgaaccctcttaactaagnattttcttatttatacctgttctacnnnnnnn--ctgt 59
             |||||| |||||||||||||| |||||||||||||||||||||||||         ||||
Sbjct: 11311 acatgacccctcttaactaag-attttcttatttatacctgttctactgtttttttctgt 11369

                                                                         
Query: 60    tctggctcggttattctatctagccgagccattcattcctttttatgaaagaaagataag 119
             |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 11370 tctggctcggttattctatctagccgagccattcattcctttctatgaaagaaagataag 11429

               
Query: 120   gg 121
             ||
Sbjct: 11430 gg 11431



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                    
Query: 141   aaagaaacaaacgtattcaataagcaaaaggagagagag 179
             |||||||||||||||||||||| ||||||| | ||||||
Sbjct: 11453 aaagaaacaaacgtattcaatacgcaaaagaaaagagag 11491



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 44519 agagagggattcgaaccctcg 44499



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 7834 agagagggattcgaaccctcg 7854

---

>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08,
             complete sequence
          Length = 145980

 Score =  254 bits (128), Expect = 3e-64
 Identities = 137/140 (97%)
 Strand = Plus / Plus

                                                                         
Query: 162   aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 221
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94845 aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 94904

                                                                         
Query: 222   aagaccggagctatcaaccactcagctatctctccaccgcctaatccttattttactcct 281
             |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 94905 aagaccggagctatcaaccactcagccatctctccacagcctaatccttattttattcct 94964

                                 
Query: 282   acaaatagaacatagccata 301
             ||||||||||||||||||||
Sbjct: 94965 acaaatagaacatagccata 94984



 Score =  149 bits (75), Expect = 1e-32
 Identities = 177/207 (85%), Gaps = 13/207 (6%)
 Strand = Plus / Plus

                                                                         
Query: 322   taacctctagaaagatatcagatacaagttccttttcgatatatctctgtatactgtata 381
             ||||||||||||| || ||| |||||| | |||||||||||||| |||||||||||||| 
Sbjct: 94998 taacctctagaaacatctcaaatacaaatcccttttcgatatatttctgtatactgtatc 95057

                                                                         
Query: 382   cacggatacaggatccgctatacccgcttgtgaaataaagactaaataacctcctctcac 441
             || | ||||||||||||||||| |||||||||||||||||  |||  |||  || |||| 
Sbjct: 95058 catgtatacaggatccgctatatccgcttgtgaaataaagcataa--aac--cccctcaa 95113

                                                                         
Query: 442   ccccatatccaaat-aaaaaagaggt----taagtaataaattttaattaaagagaagaa 496
             |||||||||||||| ||||||| |||    | |||||||| ||||    |||||||||||
Sbjct: 95114 ccccatatccaaataaaaaaagtggtgtggtgagtaataagtttt----aaagagaagaa 95169

                                        
Query: 497   tcaatggattcatgattaaacccctcc 523
             |||||||||||||||||||||||||||
Sbjct: 95170 tcaatggattcatgattaaacccctcc 95196



 Score =  147 bits (74), Expect = 4e-32
 Identities = 110/122 (90%), Gaps = 3/122 (2%)
 Strand = Plus / Plus

                                                                         
Query: 2     acatgaaccctcttaactaagnattttcttatttatacctgttctacnnnnnnn--ctgt 59
             |||||| |||||||||||||| |||||||||||||||||||||||||         ||||
Sbjct: 94660 acatgacccctcttaactaag-attttcttatttatacctgttctactgtttttttctgt 94718

                                                                         
Query: 60    tctggctcggttattctatctagccgagccattcattcctttttatgaaagaaagataag 119
             |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 94719 tctggctcggttattctatctagccgagccattcattcctttctatgaaagaaagataag 94778

               
Query: 120   gg 121
             ||
Sbjct: 94779 gg 94780



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                    
Query: 141   aaagaaacaaacgtattcaataagcaaaaggagagagag 179
             |||||||||||||||||||||| ||||||| | ||||||
Sbjct: 94802 aaagaaacaaacgtattcaatacgcaaaagaaaagagag 94840



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 91250 agagagggattcgaaccctcg 91270



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 49788 agagagggattcgaaccctcg 49768



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 29292 agagagggattcgaaccctcg 29272

---

>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
            OSJNAb0075K12, complete sequence
          Length = 125936

 Score =  254 bits (128), Expect = 3e-64
 Identities = 137/140 (97%)
 Strand = Plus / Plus

                                                                        
Query: 162  aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 221
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9720 aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 9779

                                                                        
Query: 222  aagaccggagctatcaaccactcagctatctctccaccgcctaatccttattttactcct 281
            |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 9780 aagaccggagctatcaaccactcagccatctctccacagcctaatccttattttattcct 9839

                                
Query: 282  acaaatagaacatagccata 301
            ||||||||||||||||||||
Sbjct: 9840 acaaatagaacatagccata 9859



 Score =  165 bits (83), Expect = 2e-37
 Identities = 174/202 (86%), Gaps = 8/202 (3%)
 Strand = Plus / Plus

                                                                         
Query: 322   taacctctagaaagatatcagatacaagttccttttcgatatatctctgtatactgtata 381
             ||||||||||||| || ||| |||||| | |||||||||||||| |||||||||||||| 
Sbjct: 9873  taacctctagaaacatctcaaatacaaatcccttttcgatatatttctgtatactgtatc 9932

                                                                         
Query: 382   cacggatacaggatccgctatacccgcttgtgaaataaagactaaataacctcctctcac 441
             || | ||||||||||||||||| |||||||||||||||||  |||  |||  || |||| 
Sbjct: 9933  catgtatacaggatccgctatatccgcttgtgaaataaagcataa--aac--cccctcaa 9988

                                                                         
Query: 442   ccccatatccaaataaaaaagaggttaagtaataaattttaattaaagagaagaatcaat 501
             ||||||||||||||||||||   | | |||||||| ||    ||||||||||||||||||
Sbjct: 9989  ccccatatccaaataaaaaaagtggtgagtaataagtt----ttaaagagaagaatcaat 10044

                                   
Query: 502   ggattcatgattaaacccctcc 523
             ||||||||||||||||||||||
Sbjct: 10045 ggattcatgattaaacccctcc 10066



 Score =  131 bits (66), Expect = 3e-27
 Identities = 108/122 (88%), Gaps = 3/122 (2%)
 Strand = Plus / Plus

                                                                        
Query: 2    acatgaaccctcttaactaagnattttcttatttatacctgttctacnnnnnnn--ctgt 59
            |||||| ||| |||||||||| |||||||||||||||||||||||||         ||||
Sbjct: 9535 acatgaccccacttaactaag-attttcttatttatacctgttctactgtttttttctgt 9593

                                                                        
Query: 60   tctggctcggttattctatctagccgagccattcattcctttttatgaaagaaagataag 119
            | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 9594 tatggctcggttattctatctagccgagccattcattcctttctatgaaagaaagataag 9653

              
Query: 120  gg 121
            ||
Sbjct: 9654 gg 9655



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                   
Query: 141  aaagaaacaaacgtattcaataagcaaaaggagagagag 179
            |||||||||||||||||||||| ||||||| | ||||||
Sbjct: 9677 aaagaaacaaacgtattcaatacgcaaaagaaaagagag 9715



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 42758 agagagggattcgaaccctcg 42738



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 6127 agagagggattcgaaccctcg 6147

---

>gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar Nipponbare from
             chromosome 10, complete sequence
          Length = 134933

 Score =  254 bits (128), Expect = 3e-64
 Identities = 137/140 (97%)
 Strand = Plus / Plus

                                                                         
Query: 162   aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 221
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84653 aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 84712

                                                                         
Query: 222   aagaccggagctatcaaccactcagctatctctccaccgcctaatccttattttactcct 281
             |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 84713 aagaccggagctatcaaccactcagccatctctccacagcctaatccttattttattcct 84772

                                 
Query: 282   acaaatagaacatagccata 301
             ||||||||||||||||||||
Sbjct: 84773 acaaatagaacatagccata 84792



 Score =  165 bits (83), Expect = 2e-37
 Identities = 174/202 (86%), Gaps = 8/202 (3%)
 Strand = Plus / Plus

                                                                         
Query: 322   taacctctagaaagatatcagatacaagttccttttcgatatatctctgtatactgtata 381
             ||||||||||||| || ||| |||||| | |||||||||||||| |||||||||||||| 
Sbjct: 84806 taacctctagaaacatctcaaatacaaatcccttttcgatatatttctgtatactgtatc 84865

                                                                         
Query: 382   cacggatacaggatccgctatacccgcttgtgaaataaagactaaataacctcctctcac 441
             || | ||||||||||||||||| |||||||||||||||||  |||  |||  || |||| 
Sbjct: 84866 catgtatacaggatccgctatatccgcttgtgaaataaagcataa--aac--cccctcaa 84921

                                                                         
Query: 442   ccccatatccaaataaaaaagaggttaagtaataaattttaattaaagagaagaatcaat 501
             ||||||||||||||||||||   | | |||||||| ||    ||||||||||||||||||
Sbjct: 84922 ccccatatccaaataaaaaaagtggtgagtaataagtt----ttaaagagaagaatcaat 84977

                                   
Query: 502   ggattcatgattaaacccctcc 523
             ||||||||||||||||||||||
Sbjct: 84978 ggattcatgattaaacccctcc 84999



 Score =  131 bits (66), Expect = 3e-27
 Identities = 108/122 (88%), Gaps = 3/122 (2%)
 Strand = Plus / Plus

                                                                         
Query: 2     acatgaaccctcttaactaagnattttcttatttatacctgttctacnnnnnnn--ctgt 59
             |||||| ||| |||||||||| |||||||||||||||||||||||||         ||||
Sbjct: 84468 acatgaccccacttaactaag-attttcttatttatacctgttctactgtttttttctgt 84526

                                                                         
Query: 60    tctggctcggttattctatctagccgagccattcattcctttttatgaaagaaagataag 119
             | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 84527 tatggctcggttattctatctagccgagccattcattcctttctatgaaagaaagataag 84586

               
Query: 120   gg 121
             ||
Sbjct: 84587 gg 84588



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                    
Query: 141   aaagaaacaaacgtattcaataagcaaaaggagagagag 179
             |||||||||||||||||||||| ||||||| | ||||||
Sbjct: 84610 aaagaaacaaacgtattcaatacgcaaaagaaaagagag 84648



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 174    agagagggattcgaaccctcg 194
              |||||||||||||||||||||
Sbjct: 117691 agagagggattcgaaccctcg 117671



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 81060 agagagggattcgaaccctcg 81080

---

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score =  254 bits (128), Expect = 3e-64
 Identities = 137/140 (97%)
 Strand = Plus / Plus

                                                                           
Query: 162     aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 221
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9240724 aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 9240783

                                                                           
Query: 222     aagaccggagctatcaaccactcagctatctctccaccgcctaatccttattttactcct 281
               |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 9240784 aagaccggagctatcaaccactcagccatctctccacagcctaatccttattttattcct 9240843

                                   
Query: 282     acaaatagaacatagccata 301
               ||||||||||||||||||||
Sbjct: 9240844 acaaatagaacatagccata 9240863



 Score =  254 bits (128), Expect = 3e-64
 Identities = 137/140 (97%)
 Strand = Plus / Plus

                                                                           
Query: 162     aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 221
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9136819 aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 9136878

                                                                           
Query: 222     aagaccggagctatcaaccactcagctatctctccaccgcctaatccttattttactcct 281
               |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 9136879 aagaccggagctatcaaccactcagccatctctccacagcctaatccttattttattcct 9136938

                                   
Query: 282     acaaatagaacatagccata 301
               ||||||||||||||||||||
Sbjct: 9136939 acaaatagaacatagccata 9136958



 Score =  149 bits (75), Expect = 1e-32
 Identities = 177/207 (85%), Gaps = 13/207 (6%)
 Strand = Plus / Plus

                                                                           
Query: 322     taacctctagaaagatatcagatacaagttccttttcgatatatctctgtatactgtata 381
               ||||||||||||| || ||| |||||| | |||||||||||||| |||||||||||||| 
Sbjct: 9240877 taacctctagaaacatctcaaatacaaatcccttttcgatatatttctgtatactgtatc 9240936

                                                                           
Query: 382     cacggatacaggatccgctatacccgcttgtgaaataaagactaaataacctcctctcac 441
               || | ||||||||||||||||| |||||||||||||||||  |||  |||  || |||| 
Sbjct: 9240937 catgtatacaggatccgctatatccgcttgtgaaataaagcataa--aac--cccctcaa 9240992

                                                                           
Query: 442     ccccatatccaaat-aaaaaagaggt----taagtaataaattttaattaaagagaagaa 496
               |||||||||||||| ||||||| |||    | |||||||| ||||    |||||||||||
Sbjct: 9240993 ccccatatccaaataaaaaaagtggtgtggtgagtaataagtttt----aaagagaagaa 9241048

                                          
Query: 497     tcaatggattcatgattaaacccctcc 523
               |||||||||||||||||||||||||||
Sbjct: 9241049 tcaatggattcatgattaaacccctcc 9241075



 Score =  149 bits (75), Expect = 1e-32
 Identities = 177/207 (85%), Gaps = 13/207 (6%)
 Strand = Plus / Plus

                                                                           
Query: 322     taacctctagaaagatatcagatacaagttccttttcgatatatctctgtatactgtata 381
               ||||||||||||| || ||| |||||| | |||||||||||||| |||||||||||||| 
Sbjct: 9136972 taacctctagaaacatctcaaatacaaatcccttttcgatatatttctgtatactgtatc 9137031

                                                                           
Query: 382     cacggatacaggatccgctatacccgcttgtgaaataaagactaaataacctcctctcac 441
               || | ||||||||||||||||| |||||||||||||||||  |||  |||  || |||| 
Sbjct: 9137032 catgtatacaggatccgctatatccgcttgtgaaataaagcataa--aac--cccctcaa 9137087

                                                                           
Query: 442     ccccatatccaaat-aaaaaagaggt----taagtaataaattttaattaaagagaagaa 496
               |||||||||||||| ||||||| |||    | |||||||| ||||    |||||||||||
Sbjct: 9137088 ccccatatccaaataaaaaaagtggtgtggtgagtaataagtttt----aaagagaagaa 9137143

                                          
Query: 497     tcaatggattcatgattaaacccctcc 523
               |||||||||||||||||||||||||||
Sbjct: 9137144 tcaatggattcatgattaaacccctcc 9137170



 Score =  147 bits (74), Expect = 4e-32
 Identities = 110/122 (90%), Gaps = 3/122 (2%)
 Strand = Plus / Plus

                                                                           
Query: 2       acatgaaccctcttaactaagnattttcttatttatacctgttctacnnnnnnn--ctgt 59
               |||||| |||||||||||||| |||||||||||||||||||||||||         ||||
Sbjct: 9240539 acatgacccctcttaactaag-attttcttatttatacctgttctactgtttttttctgt 9240597

                                                                           
Query: 60      tctggctcggttattctatctagccgagccattcattcctttttatgaaagaaagataag 119
               |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 9240598 tctggctcggttattctatctagccgagccattcattcctttctatgaaagaaagataag 9240657

                 
Query: 120     gg 121
               ||
Sbjct: 9240658 gg 9240659



 Score =  147 bits (74), Expect = 4e-32
 Identities = 110/122 (90%), Gaps = 3/122 (2%)
 Strand = Plus / Plus

                                                                           
Query: 2       acatgaaccctcttaactaagnattttcttatttatacctgttctacnnnnnnn--ctgt 59
               |||||| |||||||||||||| |||||||||||||||||||||||||         ||||
Sbjct: 9136634 acatgacccctcttaactaag-attttcttatttatacctgttctactgtttttttctgt 9136692

                                                                           
Query: 60      tctggctcggttattctatctagccgagccattcattcctttttatgaaagaaagataag 119
               |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 9136693 tctggctcggttattctatctagccgagccattcattcctttctatgaaagaaagataag 9136752

                 
Query: 120     gg 121
               ||
Sbjct: 9136753 gg 9136754



 Score =  147 bits (74), Expect = 4e-32
 Identities = 89/94 (94%)
 Strand = Plus / Minus

                                                                           
Query: 165     caaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttcaag 224
               ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 5174509 caaaaggagagagagggattcaaaccctcgatagttcctagaactatactggttttcaag 5174450

                                                 
Query: 225     accggagctatcaaccactcagctatctctccac 258
               | ||||||||||||||||| ||| ||||||||||
Sbjct: 5174449 atcggagctatcaaccacttagccatctctccac 5174416



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 54/60 (90%)
 Strand = Plus / Minus

                                                                           
Query: 59      ttctggctcggttattctatctagccgagccattcattcctttttatgaaagaaagataa 118
               ||||| |||| |||||||||||||| ||||||||||||||||| ||| ||| ||||||||
Sbjct: 5174640 ttctgactcgcttattctatctagctgagccattcattcctttctataaaataaagataa 5174581



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                      
Query: 141     aaagaaacaaacgtattcaataagcaaaaggagagagag 179
               |||||||||||||||||||||| ||||||| | ||||||
Sbjct: 9240681 aaagaaacaaacgtattcaatacgcaaaagaaaagagag 9240719



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                      
Query: 141     aaagaaacaaacgtattcaataagcaaaaggagagagag 179
               |||||||||||||||||||||| ||||||| | ||||||
Sbjct: 9136776 aaagaaacaaacgtattcaatacgcaaaagaaaagagag 9136814



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 174     agagagggattcgaaccctcg 194
               |||||||||||||||||||||
Sbjct: 9210177 agagagggattcgaaccctcg 9210197



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 174     agagagggattcgaaccctcg 194
               |||||||||||||||||||||
Sbjct: 9133224 agagagggattcgaaccctcg 9133244



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 174     agagagggattcgaaccctcg 194
               |||||||||||||||||||||
Sbjct: 9091862 agagagggattcgaaccctcg 9091842



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 174     agagagggattcgaaccctcg 194
               |||||||||||||||||||||
Sbjct: 9071366 agagagggattcgaaccctcg 9071346



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 365     tctctgtatactgtatacac 384
               ||||||||||||||||||||
Sbjct: 2510755 tctctgtatactgtatacac 2510736

---

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  254 bits (128), Expect = 3e-64
 Identities = 137/140 (97%)
 Strand = Plus / Plus

                                                                            
Query: 162      aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 221
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10303328 aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 10303387

                                                                            
Query: 222      aagaccggagctatcaaccactcagctatctctccaccgcctaatccttattttactcct 281
                |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 10303388 aagaccggagctatcaaccactcagccatctctccacagcctaatccttattttattcct 10303447

                                    
Query: 282      acaaatagaacatagccata 301
                ||||||||||||||||||||
Sbjct: 10303448 acaaatagaacatagccata 10303467



 Score =  165 bits (83), Expect = 2e-37
 Identities = 174/202 (86%), Gaps = 8/202 (3%)
 Strand = Plus / Plus

                                                                            
Query: 322      taacctctagaaagatatcagatacaagttccttttcgatatatctctgtatactgtata 381
                ||||||||||||| || ||| |||||| | |||||||||||||| |||||||||||||| 
Sbjct: 10303481 taacctctagaaacatctcaaatacaaatcccttttcgatatatttctgtatactgtatc 10303540

                                                                            
Query: 382      cacggatacaggatccgctatacccgcttgtgaaataaagactaaataacctcctctcac 441
                || | ||||||||||||||||| |||||||||||||||||  |||  |||  || |||| 
Sbjct: 10303541 catgtatacaggatccgctatatccgcttgtgaaataaagcataa--aac--cccctcaa 10303596

                                                                            
Query: 442      ccccatatccaaataaaaaagaggttaagtaataaattttaattaaagagaagaatcaat 501
                ||||||||||||||||||||   | | |||||||| ||    ||||||||||||||||||
Sbjct: 10303597 ccccatatccaaataaaaaaagtggtgagtaataagtt----ttaaagagaagaatcaat 10303652

                                      
Query: 502      ggattcatgattaaacccctcc 523
                ||||||||||||||||||||||
Sbjct: 10303653 ggattcatgattaaacccctcc 10303674



 Score =  131 bits (66), Expect = 3e-27
 Identities = 108/122 (88%), Gaps = 3/122 (2%)
 Strand = Plus / Plus

                                                                            
Query: 2        acatgaaccctcttaactaagnattttcttatttatacctgttctacnnnnnnn--ctgt 59
                |||||| ||| |||||||||| |||||||||||||||||||||||||         ||||
Sbjct: 10303143 acatgaccccacttaactaag-attttcttatttatacctgttctactgtttttttctgt 10303201

                                                                            
Query: 60       tctggctcggttattctatctagccgagccattcattcctttttatgaaagaaagataag 119
                | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 10303202 tatggctcggttattctatctagccgagccattcattcctttctatgaaagaaagataag 10303261

                  
Query: 120      gg 121
                ||
Sbjct: 10303262 gg 10303263



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                       
Query: 141      aaagaaacaaacgtattcaataagcaaaaggagagagag 179
                |||||||||||||||||||||| ||||||| | ||||||
Sbjct: 10303285 aaagaaacaaacgtattcaatacgcaaaagaaaagagag 10303323



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 174      agagagggattcgaaccctcg 194
                |||||||||||||||||||||
Sbjct: 21928706 agagagggattcgaaccctcg 21928686



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 174      agagagggattcgaaccctcg 194
                |||||||||||||||||||||
Sbjct: 19950091 agagagggattcgaaccctcg 19950111



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 174      agagagggattcgaaccctcg 194
                |||||||||||||||||||||
Sbjct: 10336366 agagagggattcgaaccctcg 10336346



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 174      agagagggattcgaaccctcg 194
                |||||||||||||||||||||
Sbjct: 10299735 agagagggattcgaaccctcg 10299755

---

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  254 bits (128), Expect = 3e-64
 Identities = 137/140 (97%)
 Strand = Plus / Plus

                                                                            
Query: 162      aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 221
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12845068 aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 12845127

                                                                            
Query: 222      aagaccggagctatcaaccactcagctatctctccaccgcctaatccttattttactcct 281
                |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 12845128 aagaccggagctatcaaccactcagccatctctccacagcctaatccttattttattcct 12845187

                                    
Query: 282      acaaatagaacatagccata 301
                ||||||||||||||||||||
Sbjct: 12845188 acaaatagaacatagccata 12845207



 Score =  165 bits (83), Expect = 2e-37
 Identities = 174/202 (86%), Gaps = 8/202 (3%)
 Strand = Plus / Plus

                                                                            
Query: 322      taacctctagaaagatatcagatacaagttccttttcgatatatctctgtatactgtata 381
                ||||||||||||| || ||| |||||| | |||||||||||||| |||||||||||||| 
Sbjct: 12845221 taacctctagaaacatctcaaatacaaatcccttttcgatatatttctgtatactgtatc 12845280

                                                                            
Query: 382      cacggatacaggatccgctatacccgcttgtgaaataaagactaaataacctcctctcac 441
                || | ||||||||||||||||| |||||||||||||||||  |||  |||  || |||| 
Sbjct: 12845281 catgtatacaggatccgctatatccgcttgtgaaataaagcataa--aac--cccctcaa 12845336

                                                                            
Query: 442      ccccatatccaaataaaaaagaggttaagtaataaattttaattaaagagaagaatcaat 501
                ||||||||||||||||||||   | | |||||||| ||    ||||||||||||||||||
Sbjct: 12845337 ccccatatccaaataaaaaaagtggtgagtaataagtt----ttaaagagaagaatcaat 12845392

                                      
Query: 502      ggattcatgattaaacccctcc 523
                ||||||||||||||||||||||
Sbjct: 12845393 ggattcatgattaaacccctcc 12845414



 Score =  143 bits (72), Expect = 7e-31
 Identities = 110/123 (89%), Gaps = 4/123 (3%)
 Strand = Plus / Plus

                                                                            
Query: 2        acatgaaccctcttaactaagnattttcttatttatacctgttctacnnnnnnn---ctg 58
                |||||| |||||||||||||| |||||||||||||||||||||||||          |||
Sbjct: 12844882 acatgacccctcttaactaag-attttcttatttatacctgttctactgttttttttctg 12844940

                                                                            
Query: 59       ttctggctcggttattctatctagccgagccattcattcctttttatgaaagaaagataa 118
                ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 12844941 ttctggctcggttattctatctagccgagccattcattcctttctatgaaagaaagataa 12845000

                   
Query: 119      ggg 121
                |||
Sbjct: 12845001 ggg 12845003



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                       
Query: 141      aaagaaacaaacgtattcaataagcaaaaggagagagag 179
                ||||||||||| |||||||||| ||||||| | ||||||
Sbjct: 12845025 aaagaaacaaatgtattcaatacgcaaaagaaaagagag 12845063

---

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  254 bits (128), Expect = 3e-64
 Identities = 137/140 (97%)
 Strand = Plus / Plus

                                                                            
Query: 162      aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 221
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34275746 aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 34275805

                                                                            
Query: 222      aagaccggagctatcaaccactcagctatctctccaccgcctaatccttattttactcct 281
                |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 34275806 aagaccggagctatcaaccactcagccatctctccacagcctaatccttattttattcct 34275865

                                    
Query: 282      acaaatagaacatagccata 301
                ||||||||||||||||||||
Sbjct: 34275866 acaaatagaacatagccata 34275885



 Score =  163 bits (82), Expect = 7e-37
 Identities = 173/201 (86%), Gaps = 8/201 (3%)
 Strand = Plus / Plus

                                                                            
Query: 322      taacctctagaaagatatcagatacaagttccttttcgatatatctctgtatactgtata 381
                ||||||||||||| || ||  |||||||| |||||||||||||| |||||||||||||| 
Sbjct: 34275899 taacctctagaaacatctcgaatacaagtcccttttcgatatatttctgtatactgtatc 34275958

                                                                            
Query: 382      cacggatacaggatccgctatacccgcttgtgaaataaagactaaataacctcctctcac 441
                || | ||||||||||||||||| |||||||||||||||||  |||  |||  || |||| 
Sbjct: 34275959 catgtatacaggatccgctatatccgcttgtgaaataaagcataa--aac--cccctcaa 34276014

                                                                            
Query: 442      ccccatatccaaataaaaaagaggttaagtaataaattttaattaaagagaagaatcaat 501
                ||||||||||||||||||||   | | |||||||| ||    ||||||||||||||||||
Sbjct: 34276015 ccccatatccaaataaaaaaagtggtgagtaataagtt----ttaaagagaagaatcaat 34276070

                                     
Query: 502      ggattcatgattaaacccctc 522
                |||||||||||||||||||||
Sbjct: 34276071 ggattcatgattaaacccctc 34276091



 Score =  115 bits (58), Expect = 1e-22
 Identities = 64/66 (96%)
 Strand = Plus / Plus

                                                                            
Query: 56       ctgttctggctcggttattctatctagccgagccattcattcctttttatgaaagaaaga 115
                |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 34275614 ctgttctggctcgggtattctatctagccgagccattcattcctttctatgaaagaaaga 34275673

                      
Query: 116      taaggg 121
                ||||||
Sbjct: 34275674 taaggg 34275679



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                            
Query: 322      taacctctagaaagatatcagatacaagttccttttcgatatatctctgtatactgtata 381
                ||||||||||||| || ||| |||||| | |||||||||||||| ||| |||||||||| 
Sbjct: 35389803 taacctctagaaacatctcaaatacaaatcccttttcgatatatttctatatactgtatc 35389862

                                      
Query: 382      cacggatacaggatccgctata 403
                || | |||||||||||||||||
Sbjct: 35389863 catgtatacaggatccgctata 35389884



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                       
Query: 141      aaagaaacaaacgtattcaataagcaaaaggagagagag 179
                |||||||||||||||||||||| ||||||| | ||||||
Sbjct: 34275701 aaagaaacaaacgtattcaatacgcaaaagaaaagagag 34275739

---

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  254 bits (128), Expect = 3e-64
 Identities = 137/140 (97%)
 Strand = Plus / Minus

                                                                            
Query: 162      aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 221
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14384821 aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 14384762

                                                                            
Query: 222      aagaccggagctatcaaccactcagctatctctccaccgcctaatccttattttactcct 281
                |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 14384761 aagaccggagctatcaaccactcagccatctctccacagcctaatccttattttattcct 14384702

                                    
Query: 282      acaaatagaacatagccata 301
                ||||||||||||||||||||
Sbjct: 14384701 acaaatagaacatagccata 14384682



 Score =  165 bits (83), Expect = 2e-37
 Identities = 174/202 (86%), Gaps = 8/202 (3%)
 Strand = Plus / Minus

                                                                            
Query: 322      taacctctagaaagatatcagatacaagttccttttcgatatatctctgtatactgtata 381
                ||||||||||||| || ||| |||||| | |||||||||||||| |||||||||||||| 
Sbjct: 14384668 taacctctagaaacatctcaaatacaaatcccttttcgatatatttctgtatactgtatc 14384609

                                                                            
Query: 382      cacggatacaggatccgctatacccgcttgtgaaataaagactaaataacctcctctcac 441
                || | ||||||||||||||||| |||||||||||||||||  |||  |||  || |||| 
Sbjct: 14384608 catgtatacaggatccgctatatccgcttgtgaaataaagcataa--aac--cccctcaa 14384553

                                                                            
Query: 442      ccccatatccaaataaaaaagaggttaagtaataaattttaattaaagagaagaatcaat 501
                ||||||||||||||||||||   | | |||||||| ||    ||||||||||||||||||
Sbjct: 14384552 ccccatatccaaataaaaaaagtggtgagtaataagtt----ttaaagagaagaatcaat 14384497

                                      
Query: 502      ggattcatgattaaacccctcc 523
                ||||||||||||||||||||||
Sbjct: 14384496 ggattcatgattaaacccctcc 14384475



 Score =  147 bits (74), Expect = 4e-32
 Identities = 110/122 (90%), Gaps = 3/122 (2%)
 Strand = Plus / Minus

                                                                            
Query: 2        acatgaaccctcttaactaagnattttcttatttatacctgttctacnnnnnnn--ctgt 59
                |||||| |||||||||||||| |||||||||||||||||||||||||         ||||
Sbjct: 14385007 acatgacccctcttaactaag-attttcttatttatacctgttctactgtttttttctgt 14384949

                                                                            
Query: 60       tctggctcggttattctatctagccgagccattcattcctttttatgaaagaaagataag 119
                |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 14384948 tctggctcggttattctatctagccgagccattcattcctttctatgaaagaaagataag 14384889

                  
Query: 120      gg 121
                ||
Sbjct: 14384888 gg 14384887



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                       
Query: 141      aaagaaacaaacgtattcaataagcaaaaggagagagag 179
                |||||||||||||||||||||| ||||||| | ||||||
Sbjct: 14384864 aaagaaacaaacgtattcaatacgcaaaagaaaagagag 14384826



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 174      agagagggattcgaaccctcg 194
                |||||||||||||||||||||
Sbjct: 32712971 agagagggattcgaaccctcg 32712951



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 174      agagagggattcgaaccctcg 194
                |||||||||||||||||||||
Sbjct: 29092745 agagagggattcgaaccctcg 29092725



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 174      agagagggattcgaaccctcg 194
                |||||||||||||||||||||
Sbjct: 14388485 agagagggattcgaaccctcg 14388465

---

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  254 bits (128), Expect = 3e-64
 Identities = 137/140 (97%)
 Strand = Plus / Plus

                                                                            
Query: 162      aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 221
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33563513 aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 33563572

                                                                            
Query: 222      aagaccggagctatcaaccactcagctatctctccaccgcctaatccttattttactcct 281
                |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 33563573 aagaccggagctatcaaccactcagccatctctccacagcctaatccttattttattcct 33563632

                                    
Query: 282      acaaatagaacatagccata 301
                ||||||||||||||||||||
Sbjct: 33563633 acaaatagaacatagccata 33563652



 Score =  165 bits (83), Expect = 2e-37
 Identities = 174/202 (86%), Gaps = 8/202 (3%)
 Strand = Plus / Plus

                                                                            
Query: 322      taacctctagaaagatatcagatacaagttccttttcgatatatctctgtatactgtata 381
                ||||||||||||| || ||| |||||| | |||||||||||||| |||||||||||||| 
Sbjct: 33563666 taacctctagaaacatctcaaatacaaatcccttttcgatatatttctgtatactgtatc 33563725

                                                                            
Query: 382      cacggatacaggatccgctatacccgcttgtgaaataaagactaaataacctcctctcac 441
                || | ||||||||||||||||| |||||||||||||||||  |||  |||  || |||| 
Sbjct: 33563726 catgtatacaggatccgctatatccgcttgtgaaataaagcataa--aac--cccctcaa 33563781

                                                                            
Query: 442      ccccatatccaaataaaaaagaggttaagtaataaattttaattaaagagaagaatcaat 501
                ||||||||||||||||||||   | | |||||||| ||    ||||||||||||||||||
Sbjct: 33563782 ccccatatccaaataaaaaaagtggtgagtaataagtt----ttaaagagaagaatcaat 33563837

                                      
Query: 502      ggattcatgattaaacccctcc 523
                ||||||||||||||||||||||
Sbjct: 33563838 ggattcatgattaaacccctcc 33563859



 Score =  147 bits (74), Expect = 4e-32
 Identities = 110/122 (90%), Gaps = 3/122 (2%)
 Strand = Plus / Plus

                                                                            
Query: 2        acatgaaccctcttaactaagnattttcttatttatacctgttctacnnnnnnn--ctgt 59
                |||||| |||||||||||||| |||||||||||||||||||||||||         ||||
Sbjct: 33563328 acatgacccctcttaactaag-attttcttatttatacctgttctactgtttttttctgt 33563386

                                                                            
Query: 60       tctggctcggttattctatctagccgagccattcattcctttttatgaaagaaagataag 119
                |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 33563387 tctggctcggttattctatctagccgagccattcattcctttctatgaaagaaagataag 33563446

                  
Query: 120      gg 121
                ||
Sbjct: 33563447 gg 33563448



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                       
Query: 141      aaagaaacaaacgtattcaataagcaaaaggagagagag 179
                |||||||||||||||||||||| ||||||| | ||||||
Sbjct: 33563470 aaagaaacaaacgtattcaatacgcaaaagaaaagagag 33563508



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                          
Query: 498      caatggattcatgattaaacccctcc 523
                ||||||||||||||||||||||||||
Sbjct: 12843022 caatggattcatgattaaacccctcc 12843047

---

>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete
              sequence
          Length = 163828

 Score =  254 bits (128), Expect = 3e-64
 Identities = 137/140 (97%)
 Strand = Plus / Plus

                                                                          
Query: 162    aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 221
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149086 aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 149145

                                                                          
Query: 222    aagaccggagctatcaaccactcagctatctctccaccgcctaatccttattttactcct 281
              |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 149146 aagaccggagctatcaaccactcagccatctctccacagcctaatccttattttattcct 149205

                                  
Query: 282    acaaatagaacatagccata 301
              ||||||||||||||||||||
Sbjct: 149206 acaaatagaacatagccata 149225



 Score =  163 bits (82), Expect = 7e-37
 Identities = 173/201 (86%), Gaps = 8/201 (3%)
 Strand = Plus / Plus

                                                                          
Query: 322    taacctctagaaagatatcagatacaagttccttttcgatatatctctgtatactgtata 381
              ||||||||||||| || ||  |||||||| |||||||||||||| |||||||||||||| 
Sbjct: 149239 taacctctagaaacatctcgaatacaagtcccttttcgatatatttctgtatactgtatc 149298

                                                                          
Query: 382    cacggatacaggatccgctatacccgcttgtgaaataaagactaaataacctcctctcac 441
              || | ||||||||||||||||| |||||||||||||||||  |||  |||  || |||| 
Sbjct: 149299 catgtatacaggatccgctatatccgcttgtgaaataaagcataa--aac--cccctcaa 149354

                                                                          
Query: 442    ccccatatccaaataaaaaagaggttaagtaataaattttaattaaagagaagaatcaat 501
              ||||||||||||||||||||   | | |||||||| ||    ||||||||||||||||||
Sbjct: 149355 ccccatatccaaataaaaaaagtggtgagtaataagtt----ttaaagagaagaatcaat 149410

                                   
Query: 502    ggattcatgattaaacccctc 522
              |||||||||||||||||||||
Sbjct: 149411 ggattcatgattaaacccctc 149431



 Score =  115 bits (58), Expect = 1e-22
 Identities = 64/66 (96%)
 Strand = Plus / Plus

                                                                          
Query: 56     ctgttctggctcggttattctatctagccgagccattcattcctttttatgaaagaaaga 115
              |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 148954 ctgttctggctcgggtattctatctagccgagccattcattcctttctatgaaagaaaga 149013

                    
Query: 116    taaggg 121
              ||||||
Sbjct: 149014 taaggg 149019



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                     
Query: 141    aaagaaacaaacgtattcaataagcaaaaggagagagag 179
              |||||||||||||||||||||| ||||||| | ||||||
Sbjct: 149041 aaagaaacaaacgtattcaatacgcaaaagaaaagagag 149079

---

>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0557A01
          Length = 147201

 Score =  254 bits (128), Expect = 3e-64
 Identities = 137/140 (97%)
 Strand = Plus / Plus

                                                                          
Query: 162    aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 221
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108710 aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 108769

                                                                          
Query: 222    aagaccggagctatcaaccactcagctatctctccaccgcctaatccttattttactcct 281
              |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 108770 aagaccggagctatcaaccactcagccatctctccacagcctaatccttattttattcct 108829

                                  
Query: 282    acaaatagaacatagccata 301
              ||||||||||||||||||||
Sbjct: 108830 acaaatagaacatagccata 108849



 Score =  165 bits (83), Expect = 2e-37
 Identities = 174/202 (86%), Gaps = 8/202 (3%)
 Strand = Plus / Plus

                                                                          
Query: 322    taacctctagaaagatatcagatacaagttccttttcgatatatctctgtatactgtata 381
              ||||||||||||| || ||| |||||| | |||||||||||||| |||||||||||||| 
Sbjct: 108863 taacctctagaaacatctcaaatacaaatcccttttcgatatatttctgtatactgtatc 108922

                                                                          
Query: 382    cacggatacaggatccgctatacccgcttgtgaaataaagactaaataacctcctctcac 441
              || | ||||||||||||||||| |||||||||||||||||  |||  |||  || |||| 
Sbjct: 108923 catgtatacaggatccgctatatccgcttgtgaaataaagcataa--aac--cccctcaa 108978

                                                                          
Query: 442    ccccatatccaaataaaaaagaggttaagtaataaattttaattaaagagaagaatcaat 501
              ||||||||||||||||||||   | | |||||||| ||    ||||||||||||||||||
Sbjct: 108979 ccccatatccaaataaaaaaagtggtgagtaataagtt----ttaaagagaagaatcaat 109034

                                    
Query: 502    ggattcatgattaaacccctcc 523
              ||||||||||||||||||||||
Sbjct: 109035 ggattcatgattaaacccctcc 109056



 Score =  147 bits (74), Expect = 4e-32
 Identities = 110/122 (90%), Gaps = 3/122 (2%)
 Strand = Plus / Plus

                                                                          
Query: 2      acatgaaccctcttaactaagnattttcttatttatacctgttctacnnnnnnn--ctgt 59
              |||||| |||||||||||||| |||||||||||||||||||||||||         ||||
Sbjct: 108525 acatgacccctcttaactaag-attttcttatttatacctgttctactgtttttttctgt 108583

                                                                          
Query: 60     tctggctcggttattctatctagccgagccattcattcctttttatgaaagaaagataag 119
              |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 108584 tctggctcggttattctatctagccgagccattcattcctttctatgaaagaaagataag 108643

                
Query: 120    gg 121
              ||
Sbjct: 108644 gg 108645



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                     
Query: 141    aaagaaacaaacgtattcaataagcaaaaggagagagag 179
              |||||||||||||||||||||| ||||||| | ||||||
Sbjct: 108667 aaagaaacaaacgtattcaatacgcaaaagaaaagagag 108705

---

>dbj|AP005408.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0022A24
          Length = 148347

 Score =  254 bits (128), Expect = 3e-64
 Identities = 137/140 (97%)
 Strand = Plus / Minus

                                                                          
Query: 162    aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 221
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106743 aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 106684

                                                                          
Query: 222    aagaccggagctatcaaccactcagctatctctccaccgcctaatccttattttactcct 281
              |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 106683 aagaccggagctatcaaccactcagccatctctccacagcctaatccttattttattcct 106624

                                  
Query: 282    acaaatagaacatagccata 301
              ||||||||||||||||||||
Sbjct: 106623 acaaatagaacatagccata 106604



 Score =  165 bits (83), Expect = 2e-37
 Identities = 174/202 (86%), Gaps = 8/202 (3%)
 Strand = Plus / Minus

                                                                          
Query: 322    taacctctagaaagatatcagatacaagttccttttcgatatatctctgtatactgtata 381
              ||||||||||||| || ||| |||||| | |||||||||||||| |||||||||||||| 
Sbjct: 106590 taacctctagaaacatctcaaatacaaatcccttttcgatatatttctgtatactgtatc 106531

                                                                          
Query: 382    cacggatacaggatccgctatacccgcttgtgaaataaagactaaataacctcctctcac 441
              || | ||||||||||||||||| |||||||||||||||||  |||  |||  || |||| 
Sbjct: 106530 catgtatacaggatccgctatatccgcttgtgaaataaagcataa--aac--cccctcaa 106475

                                                                          
Query: 442    ccccatatccaaataaaaaagaggttaagtaataaattttaattaaagagaagaatcaat 501
              ||||||||||||||||||||   | | |||||||| ||    ||||||||||||||||||
Sbjct: 106474 ccccatatccaaataaaaaaagtggtgagtaataagtt----ttaaagagaagaatcaat 106419

                                    
Query: 502    ggattcatgattaaacccctcc 523
              ||||||||||||||||||||||
Sbjct: 106418 ggattcatgattaaacccctcc 106397



 Score =  147 bits (74), Expect = 4e-32
 Identities = 110/122 (90%), Gaps = 3/122 (2%)
 Strand = Plus / Minus

                                                                          
Query: 2      acatgaaccctcttaactaagnattttcttatttatacctgttctacnnnnnnn--ctgt 59
              |||||| |||||||||||||| |||||||||||||||||||||||||         ||||
Sbjct: 106929 acatgacccctcttaactaag-attttcttatttatacctgttctactgtttttttctgt 106871

                                                                          
Query: 60     tctggctcggttattctatctagccgagccattcattcctttttatgaaagaaagataag 119
              |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 106870 tctggctcggttattctatctagccgagccattcattcctttctatgaaagaaagataag 106811

                
Query: 120    gg 121
              ||
Sbjct: 106810 gg 106809



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                     
Query: 141    aaagaaacaaacgtattcaataagcaaaaggagagagag 179
              |||||||||||||||||||||| ||||||| | ||||||
Sbjct: 106786 aaagaaacaaacgtattcaatacgcaaaagaaaagagag 106748



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 174    agagagggattcgaaccctcg 194
              |||||||||||||||||||||
Sbjct: 110407 agagagggattcgaaccctcg 110387

---

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  254 bits (128), Expect = 3e-64
 Identities = 137/140 (97%)
 Strand = Plus / Plus

                                                                            
Query: 162      aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 221
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10309367 aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 10309426

                                                                            
Query: 222      aagaccggagctatcaaccactcagctatctctccaccgcctaatccttattttactcct 281
                |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 10309427 aagaccggagctatcaaccactcagccatctctccacagcctaatccttattttattcct 10309486

                                    
Query: 282      acaaatagaacatagccata 301
                ||||||||||||||||||||
Sbjct: 10309487 acaaatagaacatagccata 10309506



 Score =  165 bits (83), Expect = 2e-37
 Identities = 174/202 (86%), Gaps = 8/202 (3%)
 Strand = Plus / Plus

                                                                            
Query: 322      taacctctagaaagatatcagatacaagttccttttcgatatatctctgtatactgtata 381
                ||||||||||||| || ||| |||||| | |||||||||||||| |||||||||||||| 
Sbjct: 10309520 taacctctagaaacatctcaaatacaaatcccttttcgatatatttctgtatactgtatc 10309579

                                                                            
Query: 382      cacggatacaggatccgctatacccgcttgtgaaataaagactaaataacctcctctcac 441
                || | ||||||||||||||||| |||||||||||||||||  |||  |||  || |||| 
Sbjct: 10309580 catgtatacaggatccgctatatccgcttgtgaaataaagcataa--aac--cccctcaa 10309635

                                                                            
Query: 442      ccccatatccaaataaaaaagaggttaagtaataaattttaattaaagagaagaatcaat 501
                ||||||||||||||||||||   | | |||||||| ||    ||||||||||||||||||
Sbjct: 10309636 ccccatatccaaataaaaaaagtggtgagtaataagtt----ttaaagagaagaatcaat 10309691

                                      
Query: 502      ggattcatgattaaacccctcc 523
                ||||||||||||||||||||||
Sbjct: 10309692 ggattcatgattaaacccctcc 10309713



 Score =  131 bits (66), Expect = 3e-27
 Identities = 108/122 (88%), Gaps = 3/122 (2%)
 Strand = Plus / Plus

                                                                            
Query: 2        acatgaaccctcttaactaagnattttcttatttatacctgttctacnnnnnnn--ctgt 59
                |||||| ||| |||||||||| |||||||||||||||||||||||||         ||||
Sbjct: 10309182 acatgaccccacttaactaag-attttcttatttatacctgttctactgtttttttctgt 10309240

                                                                            
Query: 60       tctggctcggttattctatctagccgagccattcattcctttttatgaaagaaagataag 119
                | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 10309241 tatggctcggttattctatctagccgagccattcattcctttctatgaaagaaagataag 10309300

                  
Query: 120      gg 121
                ||
Sbjct: 10309301 gg 10309302



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                       
Query: 141      aaagaaacaaacgtattcaataagcaaaaggagagagag 179
                |||||||||||||||||||||| ||||||| | ||||||
Sbjct: 10309324 aaagaaacaaacgtattcaatacgcaaaagaaaagagag 10309362



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 174      agagagggattcgaaccctcg 194
                |||||||||||||||||||||
Sbjct: 21940369 agagagggattcgaaccctcg 21940349



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 174      agagagggattcgaaccctcg 194
                |||||||||||||||||||||
Sbjct: 19961367 agagagggattcgaaccctcg 19961387



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 174      agagagggattcgaaccctcg 194
                |||||||||||||||||||||
Sbjct: 10342405 agagagggattcgaaccctcg 10342385



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 174      agagagggattcgaaccctcg 194
                |||||||||||||||||||||
Sbjct: 10305774 agagagggattcgaaccctcg 10305794

---

>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome
          Length = 134494

 Score =  254 bits (128), Expect = 3e-64
 Identities = 137/140 (97%)
 Strand = Plus / Plus

                                                                         
Query: 162   aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 221
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11433 aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 11492

                                                                         
Query: 222   aagaccggagctatcaaccactcagctatctctccaccgcctaatccttattttactcct 281
             |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 11493 aagaccggagctatcaaccactcagccatctctccacagcctaatccttattttattcct 11552

                                 
Query: 282   acaaatagaacatagccata 301
             ||||||||||||||||||||
Sbjct: 11553 acaaatagaacatagccata 11572



 Score =  165 bits (83), Expect = 2e-37
 Identities = 174/202 (86%), Gaps = 8/202 (3%)
 Strand = Plus / Plus

                                                                         
Query: 322   taacctctagaaagatatcagatacaagttccttttcgatatatctctgtatactgtata 381
             ||||||||||||| || ||| |||||| | |||||||||||||| |||||||||||||| 
Sbjct: 11586 taacctctagaaacatctcaaatacaaatcccttttcgatatatttctgtatactgtatc 11645

                                                                         
Query: 382   cacggatacaggatccgctatacccgcttgtgaaataaagactaaataacctcctctcac 441
             || | ||||||||||||||||| |||||||||||||||||  |||  |||  || |||| 
Sbjct: 11646 catgtatacaggatccgctatatccgcttgtgaaataaagcataa--aac--cccctcaa 11701

                                                                         
Query: 442   ccccatatccaaataaaaaagaggttaagtaataaattttaattaaagagaagaatcaat 501
             ||||||||||||||||||||   | | |||||||| ||    ||||||||||||||||||
Sbjct: 11702 ccccatatccaaataaaaaaagtggtgagtaataagtt----ttaaagagaagaatcaat 11757

                                   
Query: 502   ggattcatgattaaacccctcc 523
             ||||||||||||||||||||||
Sbjct: 11758 ggattcatgattaaacccctcc 11779



 Score =  147 bits (74), Expect = 4e-32
 Identities = 110/122 (90%), Gaps = 3/122 (2%)
 Strand = Plus / Plus

                                                                         
Query: 2     acatgaaccctcttaactaagnattttcttatttatacctgttctacnnnnnnn--ctgt 59
             |||||| |||||||||||||| |||||||||||||||||||||||||         ||||
Sbjct: 11248 acatgacccctcttaactaag-attttcttatttatacctgttctactgtttttttctgt 11306

                                                                         
Query: 60    tctggctcggttattctatctagccgagccattcattcctttttatgaaagaaagataag 119
             |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 11307 tctggctcggttattctatctagccgagccattcattcctttctatgaaagaaagataag 11366

               
Query: 120   gg 121
             ||
Sbjct: 11367 gg 11368



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                    
Query: 141   aaagaaacaaacgtattcaataagcaaaaggagagagag 179
             |||||||||||||||||||||| ||||||| | ||||||
Sbjct: 11390 aaagaaacaaacgtattcaatacgcaaaagaaaagagag 11428



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 44443 agagagggattcgaaccctcg 44423



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 7839 agagagggattcgaaccctcg 7859

---

>emb|X13366.1|CHSCPSBD Secale cereale chloroplast psbD, psbC and trnS genes for D2
            polypeptide, Chl a-binding protein and tRNA-Ser(uga)
          Length = 2992

 Score =  252 bits (127), Expect = 1e-63
 Identities = 140/143 (97%), Gaps = 1/143 (0%)
 Strand = Plus / Plus

                                                                        
Query: 139  tgaaagaaacaaacgtattcaataagcaaaaggagagagagggattcg-aaccctcgata 197
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2850 tgaaagaaacaaacgtattcaataagcaaaaggagagagagggattcggaaccctcgata 2909

                                                                        
Query: 198  gttcctagaactataccggttttcaagaccggagctatcaaccactcagctatctctcca 257
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2910 gttcctagaactataccggttttcaagaccggagctatcaaccactcagccatctctcca 2969

                                   
Query: 258  ccgcctaatccttattttactcc 280
            | |||||||||||||||||||||
Sbjct: 2970 cagcctaatccttattttactcc 2992



 Score =  184 bits (93), Expect = 2e-43
 Identities = 117/126 (92%), Gaps = 1/126 (0%)
 Strand = Plus / Plus

                                                                        
Query: 2    acatgaaccctcttaactaagnattttcttatttatacctgttctacnnnnnnnctgttc 61
            ||||||||||||||||||||| |||||||||||||||||||||||||       ||||||
Sbjct: 2708 acatgaaccctcttaactaag-attttcttatttatacctgttctactttttttctgttc 2766

                                                                        
Query: 62   tggctcggttattctatctagccgagccattcattcctttttatgaaagaaagataaggg 121
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2767 tggctcggttattccatctagccgagccattcattcctttttatgaaagaaagataaggg 2826

                  
Query: 122  acagaa 127
            ||||||
Sbjct: 2827 acagaa 2832

---

>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome
          Length = 141182

 Score =  252 bits (127), Expect = 1e-63
 Identities = 154/163 (94%)
 Strand = Plus / Plus

                                                                         
Query: 140   gaaagaaacaaacgtattcaataagcaaaaggagagagagggattcgaaccctcgatagt 199
             |||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 11981 gaaagaaacaaatgtattcaatatacaaaaggagagagagggattcgaaccctcgatagt 12040

                                                                         
Query: 200   tcctagaactataccggttttcaagaccggagctatcaaccactcagctatctctccacc 259
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 12041 tcctagaactataccggttttcaagaccggagctatcaaccactcagccatctctccaca 12100

                                                        
Query: 260   gcctaatccttattttactcctacaaatagaacatagccatat 302
             ||| ||||| ||||||| |||||||||||||||||||| ||||
Sbjct: 12101 gcccaatccctattttattcctacaaatagaacatagctatat 12143



 Score =  157 bits (79), Expect = 4e-35
 Identities = 148/169 (87%), Gaps = 4/169 (2%)
 Strand = Plus / Plus

                                                                         
Query: 355   tttcgatatatctctgtatactgtatacacggatacaggatccgctatacccgcttgtga 414
             |||| ||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||
Sbjct: 12181 tttcaatatatctctgtatactgtatacacggatacagaatccgctatatccgtttgtga 12240

                                                                         
Query: 415   aataaagactaaataacctcctctcacccccatatccaaataaaaaagaggttaagtaat 474
             ||||||| ||||||  ||||| |||| | ||||||||||||||||   | | |||| || 
Sbjct: 12241 aataaaggctaaatcccctcccctcaactccatatccaaataaaa---acggtaaggaaa 12297

                                                              
Query: 475   aaattttaattaaagagaagaatcaatggattcatgattaaacccctcc 523
             || |||||| |||| ||||||||||| ||||||||||||||||||||||
Sbjct: 12298 aagttttaa-taaaaagaagaatcaacggattcatgattaaacccctcc 12345



 Score =  109 bits (55), Expect = 9e-21
 Identities = 101/116 (87%), Gaps = 2/116 (1%)
 Strand = Plus / Plus

                                                                         
Query: 2     acatgaaccctcttaactaagnattttcttatttatacctgttctacnnnnnnnctgttc 61
             |||||| |||||||||||||| ||||| ||||||||||||||||||        ||||||
Sbjct: 11836 acatgacccctcttaactaag-atttt-ttatttatacctgttctagtttttttctgttc 11893

                                                                     
Query: 62    tggctcggttattctatctagccgagccattcattcctttttatgaaagaaagata 117
             |||||||||||||| ||||||||||||||||||| | |||||||||||||| ||||
Sbjct: 11894 tggctcggttattccatctagccgagccattcatgcttttttatgaaagaatgata 11949



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 47439 agagagggattcgaaccctcg 47419



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 8366 agagagggattcgaaccctcg 8386

---

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  246 bits (124), Expect = 6e-62
 Identities = 136/140 (97%)
 Strand = Plus / Minus

                                                                            
Query: 162      aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 221
                |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 13455908 aagcaaaaggagagagagggattcgaaccctcgatagttcgtagaactataccggttttc 13455849

                                                                            
Query: 222      aagaccggagctatcaaccactcagctatctctccaccgcctaatccttattttactcct 281
                |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 13455848 aagaccggagctatcaaccactcagccatctctccacagcctaatccttattttattcct 13455789

                                    
Query: 282      acaaatagaacatagccata 301
                ||||||||||||||||||||
Sbjct: 13455788 acaaatagaacatagccata 13455769



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                       
Query: 141      aaagaaacaaacgtattcaataagcaaaaggagagagag 179
                |||||||||||||||||||||| ||||||| | ||||||
Sbjct: 13455951 aaagaaacaaacgtattcaatacgcaaaagaaaagagag 13455913



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 94      attcctttttatgaaagaaa 113
               ||||||||||||||||||||
Sbjct: 6136797 attcctttttatgaaagaaa 6136816

---

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  246 bits (124), Expect = 6e-62
 Identities = 136/140 (97%)
 Strand = Plus / Minus

                                                                            
Query: 162      aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 221
                |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 13410182 aagcaaaaggagagagagggattcgaaccctcgatagttcgtagaactataccggttttc 13410123

                                                                            
Query: 222      aagaccggagctatcaaccactcagctatctctccaccgcctaatccttattttactcct 281
                |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 13410122 aagaccggagctatcaaccactcagccatctctccacagcctaatccttattttattcct 13410063

                                    
Query: 282      acaaatagaacatagccata 301
                ||||||||||||||||||||
Sbjct: 13410062 acaaatagaacatagccata 13410043



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                       
Query: 141      aaagaaacaaacgtattcaataagcaaaaggagagagag 179
                |||||||||||||||||||||| ||||||| | ||||||
Sbjct: 13410225 aaagaaacaaacgtattcaatacgcaaaagaaaagagag 13410187



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 94      attcctttttatgaaagaaa 113
               ||||||||||||||||||||
Sbjct: 6136699 attcctttttatgaaagaaa 6136718

---

>emb|AL731758.4|CNS08C87 Oryza sativa chromosome 12, . BAC OSJNBa0029K06 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 154442

 Score =  246 bits (124), Expect = 6e-62
 Identities = 136/140 (97%)
 Strand = Plus / Plus

                                                                          
Query: 162    aagcaaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttc 221
              |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 129331 aagcaaaaggagagagagggattcgaaccctcgatagttcgtagaactataccggttttc 129390

                                                                          
Query: 222    aagaccggagctatcaaccactcagctatctctccaccgcctaatccttattttactcct 281
              |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 129391 aagaccggagctatcaaccactcagccatctctccacagcctaatccttattttattcct 129450

                                  
Query: 282    acaaatagaacatagccata 301
              ||||||||||||||||||||
Sbjct: 129451 acaaatagaacatagccata 129470



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                     
Query: 141    aaagaaacaaacgtattcaataagcaaaaggagagagag 179
              |||||||||||||||||||||| ||||||| | ||||||
Sbjct: 129288 aaagaaacaaacgtattcaatacgcaaaagaaaagagag 129326

---

>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome
          Length = 140384

 Score =  244 bits (123), Expect = 2e-61
 Identities = 153/163 (93%)
 Strand = Plus / Plus

                                                                         
Query: 140   gaaagaaacaaacgtattcaataagcaaaaggagagagagggattcgaaccctcgatagt 199
             ||||||| |||| ||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 11640 gaaagaagcaaatgtattcaatatacaaaaggagagagagggattcgaaccctcgatagt 11699

                                                                         
Query: 200   tcctagaactataccggttttcaagaccggagctatcaaccactcagctatctctccacc 259
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 11700 tcctagaactataccggttttcaagaccggagctatcaaccactcagccatctctccaca 11759

                                                        
Query: 260   gcctaatccttattttactcctacaaatagaacatagccatat 302
             ||| ||||| ||||||| |||||||||||||||||||| ||||
Sbjct: 11760 gcccaatccctattttattcctacaaatagaacatagctatat 11802



 Score =  109 bits (55), Expect = 9e-21
 Identities = 101/116 (87%), Gaps = 2/116 (1%)
 Strand = Plus / Plus

                                                                         
Query: 2     acatgaaccctcttaactaagnattttcttatttatacctgttctacnnnnnnnctgttc 61
             |||||| |||||||||||||| ||||| ||||||||||||||||||        ||||||
Sbjct: 11494 acatgacccctcttaactaag-atttt-ttatttatacctgttctagtttttttctgttc 11551

                                                                     
Query: 62    tggctcggttattctatctagccgagccattcattcctttttatgaaagaaagata 117
             |||||||||||||| ||||||||||||||||||| | |||||||||||||| ||||
Sbjct: 11552 tggctcggttattccatctagccgagccattcatgcttttttatgaaagaatgata 11607



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                    
Query: 485   taaagagaagaatcaatggattcatgattaaacccctcc 523
             |||| ||||||||||||||||||||||||||||||||||
Sbjct: 11883 taaaaagaagaatcaatggattcatgattaaacccctcc 11921



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 46871 agagagggattcgaaccctcg 46851



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 8017 agagagggattcgaaccctcg 8037

---

>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome
          Length = 141182

 Score =  244 bits (123), Expect = 2e-61
 Identities = 153/163 (93%)
 Strand = Plus / Plus

                                                                         
Query: 140   gaaagaaacaaacgtattcaataagcaaaaggagagagagggattcgaaccctcgatagt 199
             |||||||||||| ||||||||||  |||||||||||||||||||| ||||||||||||||
Sbjct: 73608 gaaagaaacaaatgtattcaatatacaaaaggagagagagggatttgaaccctcgatagt 73667

                                                                         
Query: 200   tcctagaactataccggttttcaagaccggagctatcaaccactcagctatctctccacc 259
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 73668 tcctagaactataccggttttcaagaccggagctatcaaccactcagccatctctccaca 73727

                                                        
Query: 260   gcctaatccttattttactcctacaaatagaacatagccatat 302
             ||| ||||| ||||||| |||||||||||||||||||| ||||
Sbjct: 73728 gcccaatccctattttattcctacaaatagaacatagctatat 73770



 Score =  157 bits (79), Expect = 4e-35
 Identities = 148/169 (87%), Gaps = 4/169 (2%)
 Strand = Plus / Plus

                                                                         
Query: 355   tttcgatatatctctgtatactgtatacacggatacaggatccgctatacccgcttgtga 414
             |||| ||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||
Sbjct: 73808 tttcaatatatctctgtatactgtatacacggatacagaatccgctatatccgtttgtga 73867

                                                                         
Query: 415   aataaagactaaataacctcctctcacccccatatccaaataaaaaagaggttaagtaat 474
             ||||||| ||||||  ||||| |||| | ||||||||||||||||   | | |||| || 
Sbjct: 73868 aataaaggctaaatcccctcccctcaactccatatccaaataaaa---acggtaaggaaa 73924

                                                              
Query: 475   aaattttaattaaagagaagaatcaatggattcatgattaaacccctcc 523
             || |||||| |||| ||||||||||| ||||||||||||||||||||||
Sbjct: 73925 aagttttaa-taaaaagaagaatcaacggattcatgattaaacccctcc 73972



 Score =  109 bits (55), Expect = 9e-21
 Identities = 101/116 (87%), Gaps = 2/116 (1%)
 Strand = Plus / Plus

                                                                         
Query: 2     acatgaaccctcttaactaagnattttcttatttatacctgttctacnnnnnnnctgttc 61
             |||||| |||||||||||||| ||||| ||||||||||||||||||        ||||||
Sbjct: 73463 acatgacccctcttaactaag-atttt-ttatttatacctgttctagtttttttctgttc 73520

                                                                     
Query: 62    tggctcggttattctatctagccgagccattcattcctttttatgaaagaaagata 117
             |||||||||||||| ||||||||||||||||||| | |||||||||||||| ||||
Sbjct: 73521 tggctcggttattccatctagccgagccattcatgcttttttatgaaagaatgata 73576



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 174    agagagggattcgaaccctcg 194
              |||||||||||||||||||||
Sbjct: 109066 agagagggattcgaaccctcg 109046



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 69992 agagagggattcgaaccctcg 70012

---

>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome
          Length = 140454

 Score =  244 bits (123), Expect = 2e-61
 Identities = 153/163 (93%)
 Strand = Plus / Plus

                                                                         
Query: 140   gaaagaaacaaacgtattcaataagcaaaaggagagagagggattcgaaccctcgatagt 199
             ||||||| |||| ||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 11634 gaaagaagcaaatgtattcaatatacaaaaggagagagagggattcgaaccctcgatagt 11693

                                                                         
Query: 200   tcctagaactataccggttttcaagaccggagctatcaaccactcagctatctctccacc 259
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 11694 tcctagaactataccggttttcaagaccggagctatcaaccactcagccatctctccaca 11753

                                                        
Query: 260   gcctaatccttattttactcctacaaatagaacatagccatat 302
             ||| ||||| ||||||| |||||||||||||||||||| ||||
Sbjct: 11754 gcccaatccctattttattcctacaaatagaacatagctatat 11796



 Score =  109 bits (55), Expect = 9e-21
 Identities = 101/116 (87%), Gaps = 2/116 (1%)
 Strand = Plus / Plus

                                                                         
Query: 2     acatgaaccctcttaactaagnattttcttatttatacctgttctacnnnnnnnctgttc 61
             |||||| |||||||||||||| ||||| ||||||||||||||||||        ||||||
Sbjct: 11488 acatgacccctcttaactaag-atttt-ttatttatacctgttctagtttttttctgttc 11545

                                                                     
Query: 62    tggctcggttattctatctagccgagccattcattcctttttatgaaagaaagata 117
             |||||||||||||| ||||||||||||||||||| | |||||||||||||| ||||
Sbjct: 11546 tggctcggttattccatctagccgagccattcatgcttttttatgaaagaatgata 11601



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                    
Query: 485   taaagagaagaatcaatggattcatgattaaacccctcc 523
             |||| ||||||||||||||||||||||||||||||||||
Sbjct: 11877 taaaaagaagaatcaatggattcatgattaaacccctcc 11915



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 46861 agagagggattcgaaccctcg 46841



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 8012 agagagggattcgaaccctcg 8032

---

>emb|X05295.1|CHZPTRNS Zea perennis cpDNA EcoRI-PstI fragment containing length mutation
           LM-3 from large unique sequence region
          Length = 831

 Score =  244 bits (123), Expect = 2e-61
 Identities = 153/163 (93%)
 Strand = Plus / Plus

                                                                       
Query: 140 gaaagaaacaaacgtattcaataagcaaaaggagagagagggattcgaaccctcgatagt 199
           ||||||| |||| ||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 197 gaaagaagcaaatgtattcaatatacaaaaggagagagagggattcgaaccctcgatagt 256

                                                                       
Query: 200 tcctagaactataccggttttcaagaccggagctatcaaccactcagctatctctccacc 259
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 257 tcctagaactataccggttttcaagaccggagctatcaaccactcagccatctctccaca 316

                                                      
Query: 260 gcctaatccttattttactcctacaaatagaacatagccatat 302
           ||| ||||| ||||||| |||||||||||||||||||| ||||
Sbjct: 317 gcccaatccctattttattcctacaaatagaacatagctatat 359



 Score =  139 bits (70), Expect = 1e-29
 Identities = 149/169 (88%), Gaps = 6/169 (3%)
 Strand = Plus / Plus

                                                                       
Query: 355 tttcgatatatctctgtatactgtatacacggatacaggatccgctatacccgcttgtga 414
           |||| ||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||
Sbjct: 397 tttcaatatatctctgtatactgtatacacggatacagaatccgctatatccg-ttgtga 455

                                                                       
Query: 415 aataaagactaaataacctcctctcacccccatatccaaataaaaaagaggttaagtaat 474
           ||||||| ||||||  ||||| |||| | ||||||| ||||||||  | ||| ||| || 
Sbjct: 456 aataaag-ctaaatcccctcccctcaactccatatctaaataaaa--gcggt-aaggaaa 511

                                                            
Query: 475 aaattttaattaaagagaagaatcaatggattcatgattaaacccctcc 523
           || ||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 512 aagttttaataaaa-agaagaatcaatggattcatgattaaacccctcc 559



 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 100/116 (86%), Gaps = 3/116 (2%)
 Strand = Plus / Plus

                                                                       
Query: 2   acatgaaccctcttaactaagnattttcttatttatacctgttctacnnnnnnnctgttc 61
           |||||| |||||||||||||| ||||| ||||||||||||||||||        ||||||
Sbjct: 52  acatgacccctcttaactaag-atttt-ttatttatacctgttctagtttttttctgttc 109

                                                                   
Query: 62  tggctcggttattctatctagccgagccattcattcctttttatgaaagaaagata 117
           |||||||||||||| ||||||||||| ||||||| | |||||||||||||| ||||
Sbjct: 110 tggctcggttattccatctagccgag-cattcatgcttttttatgaaagaatgata 164

---

>emb|X04184.1|CHZMTRNS Zea mays chloroplast tv-UGA gene for transfer RNA-Ser (UGA)
          Length = 284

 Score =  244 bits (123), Expect = 2e-61
 Identities = 153/163 (93%)
 Strand = Plus / Minus

                                                                       
Query: 140 gaaagaaacaaacgtattcaataagcaaaaggagagagagggattcgaaccctcgatagt 199
           ||||||| |||| ||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 197 gaaagaagcaaatgtattcaatatacaaaaggagagagagggattcgaaccctcgatagt 138

                                                                       
Query: 200 tcctagaactataccggttttcaagaccggagctatcaaccactcagctatctctccacc 259
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 137 tcctagaactataccggttttcaagaccggagctatcaaccactcagccatctctccaca 78

                                                      
Query: 260 gcctaatccttattttactcctacaaatagaacatagccatat 302
           ||| ||||| ||||||| |||||||||||||||||||| ||||
Sbjct: 77  gcccaatccctattttattcctacaaatagaacatagctatat 35



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                  
Query: 63  ggctcggttattctatctagccgagccattcattcctttttatgaaagaaagata 117
           ||||||||||||| ||||||||||||||||||| | |||||||||||||| ||||
Sbjct: 284 ggctcggttattccatctagccgagccattcatgcttttttatgaaagaatgata 230

---

>emb|X02560.1|CHTATRN1 Wheat chloroplast genes for tRNA-Gly (GCC), tRNA-Met (CAU) and
           tRNA-Gly (UCC)
          Length = 2358

 Score =  192 bits (97), Expect = 8e-46
 Identities = 125/133 (93%), Gaps = 1/133 (0%)
 Strand = Plus / Plus

                                                                       
Query: 392 ggatccgctatacccgcttgtgaaataaagactaaataacctcctctcacccccatatcc 451
           |||||| |||||||| ||||||||||||||| ||||||| ||| ||||||||||||||||
Sbjct: 1   ggatcccctatacccccttgtgaaataaagagtaaataatctcttctcacccccatatcc 60

                                                                       
Query: 452 aaataaaaaagaggtt-aagtaataaattttaattaaagagaagaatcaatggattcatg 510
           ||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 61  aaataaaaaagcggtttaagtaataaatttgaattaaagagaagaatcaatggattcatg 120

                        
Query: 511 attaaacccctcc 523
           |||||||||||||
Sbjct: 121 attaaacccctcc 133

---

>emb|AL606993.2|OSJN00121 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0051N19,
            complete sequence
          Length = 49800

 Score =  147 bits (74), Expect = 4e-32
 Identities = 89/94 (94%)
 Strand = Plus / Minus

                                                                        
Query: 165  caaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttcaag 224
            ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 8914 caaaaggagagagagggattcaaaccctcgatagttcctagaactatactggttttcaag 8855

                                              
Query: 225  accggagctatcaaccactcagctatctctccac 258
            | ||||||||||||||||| ||| ||||||||||
Sbjct: 8854 atcggagctatcaaccacttagccatctctccac 8821



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 54/60 (90%)
 Strand = Plus / Minus

                                                                        
Query: 59   ttctggctcggttattctatctagccgagccattcattcctttttatgaaagaaagataa 118
            ||||| |||| |||||||||||||| ||||||||||||||||| ||| ||| ||||||||
Sbjct: 9045 ttctgactcgcttattctatctagctgagccattcattcctttctataaaataaagataa 8986

---

>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence
          Length = 124033

 Score =  139 bits (70), Expect = 1e-29
 Identities = 92/98 (93%), Gaps = 1/98 (1%)
 Strand = Plus / Plus

                                                                         
Query: 161   taagcaaaaggagagagagggattcgaaccctcgatagttccta-gaactataccggttt 219
             |||| |||||||||||| ||||||||||||||||||||||| |  |||||||||||||||
Sbjct: 98718 taagaaaaaggagagagggggattcgaaccctcgatagttctttcgaactataccggttt 98777

                                                   
Query: 220   tcaagaccggagctatcaaccactcagctatctctcca 257
             |||||||||||||||||||||||||||| |||||||||
Sbjct: 98778 tcaagaccggagctatcaaccactcagccatctctcca 98815



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 174    agagagggattcgaaccctcg 194
              |||||||||||||||||||||
Sbjct: 108176 agagagggattcgaaccctcg 108156



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 70990 agagagggattcgaaccctcg 71010

---

>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome
          Length = 148964

 Score =  137 bits (69), Expect = 4e-29
 Identities = 93/101 (92%), Gaps = 5/101 (4%)
 Strand = Plus / Plus

                                                                         
Query: 162   aagcaaaaggagagagagggattcgaaccctcgatagttcct-----agaactataccgg 216
             |||||||||||||||| |||||||||||||||||||||||||     |||||||||||||
Sbjct: 37020 aagcaaaaggagagagggggattcgaaccctcgatagttccttgttaagaactataccgg 37079

                                                      
Query: 217   ttttcaagaccggagctatcaaccactcagctatctctcca 257
             ||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 37080 ttttcaagaccggggctatcaaccactcagccatctctcca 37120



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                        
Query: 170  ggagagagagggattcgaaccctcgata 197
            ||||||||||||||||||||||||||||
Sbjct: 8356 ggagagagagggattcgaaccctcgata 8383



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 46463 agagagggattcgaaccctcg 46443

---

>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence
          Length = 162686

 Score =  135 bits (68), Expect = 2e-28
 Identities = 98/108 (90%), Gaps = 5/108 (4%)
 Strand = Plus / Plus

                                                                         
Query: 154   tattcaataagcaaaaggagagagagggattcgaaccctcgatagttcctag-----aac 208
             |||||||  ||||||||||||||||||||||||||||||||||||||| | |     |||
Sbjct: 40460 tattcaacgagcaaaaggagagagagggattcgaaccctcgatagttctttgttcggaac 40519

                                                             
Query: 209   tataccggttttcaagaccggagctatcaaccactcagctatctctcc 256
             ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 40520 tataccggttttcaagaccggagctatcaaccactcagccatctctcc 40567



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                     
Query: 170  ggagagagagggattcgaaccctcg 194
            |||||||||||||||||||||||||
Sbjct: 9863 ggagagagagggattcgaaccctcg 9887



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 50298 agagagggattcgaaccctcg 50278

---

>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome
          Length = 160301

 Score =  133 bits (67), Expect = 6e-28
 Identities = 91/99 (91%), Gaps = 5/99 (5%)
 Strand = Plus / Plus

                                                                         
Query: 163   agcaaaaggagagagagggattcgaaccctcgatagttcctag-----aactataccggt 217
             ||||||||||||||||||||||||||||||||||||||| | |     ||||||||||||
Sbjct: 37273 agcaaaaggagagagagggattcgaaccctcgatagttctttgtttcgaactataccggt 37332

                                                    
Query: 218   tttcaagaccggagctatcaaccactcagctatctctcc 256
             |||||||||||||||||||||||||||||| ||||||||
Sbjct: 37333 tttcaagaccggagctatcaaccactcagccatctctcc 37371



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 47377 agagagggattcgaaccctcg 47357



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 8176 agagagggattcgaaccctcg 8196

---

>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome
          Length = 153337

 Score =  133 bits (67), Expect = 6e-28
 Identities = 91/99 (91%), Gaps = 5/99 (5%)
 Strand = Plus / Plus

                                                                         
Query: 163   agcaaaaggagagagagggattcgaaccctcgatagttcct-----agaactataccggt 217
             ||||||||||||||||||||||||||||||||||||||| |     ||||||||||||||
Sbjct: 36664 agcaaaaggagagagagggattcgaaccctcgatagttctttgttcagaactataccggt 36723

                                                    
Query: 218   tttcaagaccggagctatcaaccactcagctatctctcc 256
             ||||||||||||||||||||||||||| || ||||||||
Sbjct: 36724 tttcaagaccggagctatcaaccactcggccatctctcc 36762



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                     
Query: 170  ggagagagagggattcgaaccctcg 194
            |||||||||||||||||||||||||
Sbjct: 8488 ggagagagagggattcgaaccctcg 8512



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 46285 agagagggattcgaaccctcg 46265

---

>gb|AC140103.7| Medicago truncatula clone mth2-9i16, complete sequence
          Length = 96937

 Score =  131 bits (66), Expect = 3e-27
 Identities = 91/98 (92%), Gaps = 1/98 (1%)
 Strand = Plus / Plus

                                                                         
Query: 161   taagcaaaaggagagagagggattcgaaccctcgatagttccta-gaactataccggttt 219
             |||| |||||||||||| ||||||||||||||||||||||| |  |||||||||| ||||
Sbjct: 60052 taagaaaaaggagagagggggattcgaaccctcgatagttctttcgaactataccagttt 60111

                                                   
Query: 220   tcaagaccggagctatcaaccactcagctatctctcca 257
             |||||||||||||||||||||||||||| |||||||||
Sbjct: 60112 tcaagaccggagctatcaaccactcagccatctctcca 60149

---

>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome
          Length = 150725

 Score =  131 bits (66), Expect = 3e-27
 Identities = 93/102 (91%), Gaps = 5/102 (4%)
 Strand = Plus / Plus

                                                                         
Query: 163   agcaaaaggagagagagggattcgaaccctcgatagttccta-----gaactataccggt 217
             |||||||||||||||||||||||||||||||||||||||  |     ||||||| |||||
Sbjct: 34182 agcaaaaggagagagagggattcgaaccctcgatagttctgaataaagaactatgccggt 34241

                                                       
Query: 218   tttcaagaccggagctatcaaccactcagctatctctccacc 259
             |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 34242 tttcaagaccggagctatcaaccactcagccatctctccacc 34283



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 44105 agagagggattcgaaccctcg 44085



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 7486 agagagggattcgaaccctcg 7506

---

>gb|M31490.1|SPICPCPSA Spinach chloroplast trnS1 gene, partial cds
          Length = 209

 Score =  131 bits (66), Expect = 3e-27
 Identities = 93/102 (91%), Gaps = 5/102 (4%)
 Strand = Plus / Minus

                                                                       
Query: 163 agcaaaaggagagagagggattcgaaccctcgatagttccta-----gaactataccggt 217
           |||||||||||||||||||||||||||||||||||||||  |     ||||||| |||||
Sbjct: 209 agcaaaaggagagagagggattcgaaccctcgatagttctgaataaagaactatgccggt 150

                                                     
Query: 218 tttcaagaccggagctatcaaccactcagctatctctccacc 259
           |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 149 tttcaagaccggagctatcaaccactcagccatctctccacc 108

---

>dbj|AB035902.1| Vigna angularis chloroplast trnS gene, complete sequence
          Length = 518

 Score =  131 bits (66), Expect = 3e-27
 Identities = 108/122 (88%), Gaps = 5/122 (4%)
 Strand = Plus / Minus

                                                                       
Query: 141 aaagaaacaaacgtattcaataagcaaaaggagagagagggattcgaaccctcgatagtt 200
           |||||||||||  ||||||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aaagaaacaaatctattcatcgagcaaaaggagagagagggattcgaaccctcgatagtt 297

                                                                       
Query: 201 cctag-----aactataccggttttcaagaccggagctatcaaccactcagctatctctc 255
           | | |     |||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 296 ctttgtttcaaactataccggttttcaagaccggggctatcaaccactcagccatctctc 237

             
Query: 256 ca 257
           ||
Sbjct: 236 ca 235

---

>dbj|AB035901.1| Vigna angularis chloroplast trnS, psbC genes
          Length = 614

 Score =  131 bits (66), Expect = 3e-27
 Identities = 108/122 (88%), Gaps = 5/122 (4%)
 Strand = Plus / Minus

                                                                       
Query: 141 aaagaaacaaacgtattcaataagcaaaaggagagagagggattcgaaccctcgatagtt 200
           |||||||||||  ||||||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aaagaaacaaatctattcatcgagcaaaaggagagagagggattcgaaccctcgatagtt 297

                                                                       
Query: 201 cctag-----aactataccggttttcaagaccggagctatcaaccactcagctatctctc 255
           | | |     |||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 296 ctttgtttcaaactataccggttttcaagaccggggctatcaaccactcagccatctctc 237

             
Query: 256 ca 257
           ||
Sbjct: 236 ca 235

---

>gb|M27309.1|PEACPD2 Pisum sativum D2 photosystem II protein and 44 kd photosystem II
            protein genes, complete cds; tRNA-Ser gene, complete
            sequence; and unknown gene; chloroplast genes for
            chloroplast products
          Length = 4078

 Score =  129 bits (65), Expect = 1e-26
 Identities = 89/97 (91%), Gaps = 5/97 (5%)
 Strand = Plus / Plus

                                                                        
Query: 166  aaaaggagagagagggattcgaaccctcgatagttcctag-----aactataccggtttt 220
            |||||||||||||||||||||||||||||||||||| | |     |||||||||||||||
Sbjct: 3117 aaaaggagagagagggattcgaaccctcgatagttctttgtttcgaactataccggtttt 3176

                                                 
Query: 221  caagaccggagctatcaaccactcagctatctctcca 257
            ||||||||||||||||||||||||||| |||||||||
Sbjct: 3177 caagaccggagctatcaaccactcagccatctctcca 3213



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 495  aatcaatggattcatgattaaaccc 519
            |||||||||||||||||| ||||||
Sbjct: 3437 aatcaatggattcatgataaaaccc 3461

---

>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome
          Length = 160928

 Score =  127 bits (64), Expect = 4e-26
 Identities = 88/96 (91%), Gaps = 5/96 (5%)
 Strand = Plus / Plus

                                                                         
Query: 166   aaaaggagagagagggattcgaaccctcgatagttcct-----agaactataccggtttt 220
             |||||||||||||||||||||||||||||||||||| |     |||||||||||||||||
Sbjct: 38780 aaaaggagagagagggattcgaaccctcgatagttctttgttcagaactataccggtttt 38839

                                                 
Query: 221   caagaccggagctatcaaccactcagctatctctcc 256
             |||||||||||||||||||||||| || ||||||||
Sbjct: 38840 caagaccggagctatcaaccactcggccatctctcc 38875



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 48912 agagagggattcgaaccctcg 48892



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 9446 agagagggattcgaaccctcg 9466

---

>gb|AY642484.1| Cypripedium parviflorum var. parviflorum tRNA-Ser (trnS) gene and
           trnS-trnfM intergenic spacer, partial sequence;
           chloroplast
          Length = 809

 Score =  125 bits (63), Expect = 2e-25
 Identities = 84/91 (92%), Gaps = 5/91 (5%)
 Strand = Plus / Plus

                                                                       
Query: 171 gagagagagggattcgaaccctcgatagttcct-----agaactataccggttttcaaga 225
           |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||
Sbjct: 2   gagagagagggattcgaaccctcgatagttccttgttaagaactataccggttttcaaga 61

                                          
Query: 226 ccggagctatcaaccactcagctatctctcc 256
           |||| ||||||||||||||||| ||||||||
Sbjct: 62  ccggggctatcaaccactcagccatctctcc 92



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 171 gagagagagggattcgaaccc 191
           |||||||||||||||||||||
Sbjct: 808 gagagagagggattcgaaccc 788

---

>gb|AY642483.1| Cypripedium acaule tRNA-Ser (trnS) gene and trnS-trnfM intergenic
           spacer, partial sequence; chloroplast
          Length = 930

 Score =  125 bits (63), Expect = 2e-25
 Identities = 84/91 (92%), Gaps = 5/91 (5%)
 Strand = Plus / Plus

                                                                       
Query: 171 gagagagagggattcgaaccctcgatagttcct-----agaactataccggttttcaaga 225
           |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||
Sbjct: 2   gagagagagggattcgaaccctcgatagttccttgttaagaactataccggttttcaaga 61

                                          
Query: 226 ccggagctatcaaccactcagctatctctcc 256
           |||| ||||||||||||||||| ||||||||
Sbjct: 62  ccggggctatcaaccactcagccatctctcc 92

---

>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome
          Length = 159930

 Score =  123 bits (62), Expect = 6e-25
 Identities = 89/98 (90%), Gaps = 5/98 (5%)
 Strand = Plus / Plus

                                                                         
Query: 164   gcaaaaggagagagagggattcgaaccctcgatagttcctag-----aactataccggtt 218
             |||||||||||||||||||||||||||||||||||| | | |     |||||||||||||
Sbjct: 39011 gcaaaaggagagagagggattcgaaccctcgatagtcctttgttcgtaactataccggtt 39070

                                                   
Query: 219   ttcaagaccggagctatcaaccactcagctatctctcc 256
             ||||||||||||||||||||||||||||| ||||||||
Sbjct: 39071 ttcaagaccggagctatcaaccactcagccatctctcc 39108



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                     
Query: 170  ggagagagagggattcgaaccctcg 194
            |||||||||||||||||||||||||
Sbjct: 9793 ggagagagagggattcgaaccctcg 9817



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 48971 agagagggattcgaaccctcg 48951

---

>gb|AY582139.1| Panax ginseng chloroplast, complete genome
          Length = 156318

 Score =  123 bits (62), Expect = 6e-25
 Identities = 87/95 (91%), Gaps = 4/95 (4%)
 Strand = Plus / Plus

                                                                         
Query: 166   aaaaggagagagagggattcgaaccctcgatagttcctag----aactataccggttttc 221
             |||||||||||||||||||||||||||||||||||| | |    |||||| |||||||||
Sbjct: 37511 aaaaggagagagagggattcgaaccctcgatagttctttgttaaaactatgccggttttc 37570

                                                
Query: 222   aagaccggagctatcaaccactcagctatctctcc 256
             |||||||||||||||||||||||||| ||||||||
Sbjct: 37571 aagaccggagctatcaaccactcagccatctctcc 37605



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 47421 agagagggattcgaaccctcg 47401



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 9433 agagagggattcgaaccctcg 9453

---

>emb|AJ970307.1| Cucumis sativus chloroplast complete genome
          Length = 155293

 Score =  121 bits (61), Expect = 2e-24
 Identities = 88/97 (90%), Gaps = 5/97 (5%)
 Strand = Plus / Plus

                                                                         
Query: 165   caaaaggagagagagggattcgaaccctcgatagttcctag-----aactataccggttt 219
             ||||||||||||||||||||||||||||||||||||| | |     ||||||||||||||
Sbjct: 37474 caaaaggagagagagggattcgaaccctcgatagttctttgtttcgaactataccggttt 37533

                                                  
Query: 220   tcaagaccggagctatcaaccactcagctatctctcc 256
             ||||||||||||||||||||||||| || ||||||||
Sbjct: 37534 tcaagaccggagctatcaaccactcggccatctctcc 37570



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 8697 agagagggattcgaaccctcg 8717

---

>gb|AC145457.1| Cicer arietinum strain FLIP84-92C clone gl1-40c9, complete sequence
          Length = 23359

 Score =  121 bits (61), Expect = 2e-24
 Identities = 88/97 (90%), Gaps = 5/97 (5%)
 Strand = Plus / Plus

                                                                         
Query: 166   aaaaggagagagagggattcgaaccctcgatagttcctag-----aactataccggtttt 220
             |||||||||||| ||||||||||||||||||||||| | |     |||||||||||||||
Sbjct: 19408 aaaaggagagagggggattcgaaccctcgatagttctttgtttcgaactataccggtttt 19467

                                                  
Query: 221   caagaccggagctatcaaccactcagctatctctcca 257
             ||||||||||||||||||||||||||| |||||||||
Sbjct: 19468 caagaccggagctatcaaccactcagccatctctcca 19504



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 495   aatcaatggattcatgattaaaccc 519
             |||||||||||||||||| ||||||
Sbjct: 19724 aatcaatggattcatgataaaaccc 19748

---

>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome
          Length = 155527

 Score =  121 bits (61), Expect = 2e-24
 Identities = 88/97 (90%), Gaps = 5/97 (5%)
 Strand = Plus / Plus

                                                                         
Query: 165   caaaaggagagagagggattcgaaccctcgatagttcctag-----aactataccggttt 219
             ||||||||||||||||||||||||||||||||||||| | |     ||||||||||||||
Sbjct: 37457 caaaaggagagagagggattcgaaccctcgatagttctttgtttcgaactataccggttt 37516

                                                  
Query: 220   tcaagaccggagctatcaaccactcagctatctctcc 256
             ||||||||||||||||||||||||| || ||||||||
Sbjct: 37517 tcaagaccggagctatcaaccactcggccatctctcc 37553



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 47387 agagagggattcgaaccctcg 47367



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 8684 agagagggattcgaaccctcg 8704

---

>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome
          Length = 150519

 Score =  121 bits (61), Expect = 2e-24
 Identities = 86/93 (92%), Gaps = 1/93 (1%)
 Strand = Plus / Minus

                                                                         
Query: 166   aaaaggagagagagggattcgaaccctcgatagttcctagaa-ctataccggttttcaag 224
             |||||||||||||||||||||||||||||||| ||| |  || |||||||||||||||||
Sbjct: 25819 aaaaggagagagagggattcgaaccctcgataattctttcaaactataccggttttcaag 25760

                                              
Query: 225   accggagctatcaaccactcagctatctctcca 257
             ||||| ||||||||||||||||| |||||||||
Sbjct: 25759 accggggctatcaaccactcagccatctctcca 25727



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 53026 agagagggattcgaaccctcg 53006



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 16068 agagagggattcgaaccctcg 16088

---

>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan)
          Length = 156687

 Score =  119 bits (60), Expect = 1e-23
 Identities = 87/96 (90%), Gaps = 5/96 (5%)
 Strand = Plus / Plus

                                                                         
Query: 166   aaaaggagagagagggattcgaaccctcgatagttcctag-----aactataccggtttt 220
             |||||||||||||||||||||||||||||||||||| | |     |||||||||||||||
Sbjct: 36888 aaaaggagagagagggattcgaaccctcgatagttctttgttcaaaactataccggtttt 36947

                                                 
Query: 221   caagaccggagctatcaaccactcagctatctctcc 256
             ||||||||| ||||||||||||||||| ||||||||
Sbjct: 36948 caagaccggggctatcaaccactcagccatctctcc 36983



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 46861 agagagggattcgaaccctcg 46841



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 8569 agagagggattcgaaccctcg 8589

---

>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome
          Length = 155298

 Score =  119 bits (60), Expect = 1e-23
 Identities = 87/96 (90%), Gaps = 5/96 (5%)
 Strand = Plus / Plus

                                                                         
Query: 166   aaaaggagagagagggattcgaaccctcgatagttcctag-----aactataccggtttt 220
             |||||||||||||||||||||||||||||||||||| | |     |||||||||||||||
Sbjct: 36396 aaaaggagagagagggattcgaaccctcgatagttctttgttcaaaactataccggtttt 36455

                                                 
Query: 221   caagaccggagctatcaaccactcagctatctctcc 256
             ||||||||| ||||||||||||||||| ||||||||
Sbjct: 36456 caagaccggggctatcaaccactcagccatctctcc 36491



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 46394 agagagggattcgaaccctcg 46374



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 8460 agagagggattcgaaccctcg 8480



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 493   agaatcaatggattcatgat 512
             ||||||||||||||||||||
Sbjct: 36722 agaatcaatggattcatgat 36741

---

>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome
          Length = 155460

 Score =  119 bits (60), Expect = 1e-23
 Identities = 87/96 (90%), Gaps = 5/96 (5%)
 Strand = Plus / Plus

                                                                         
Query: 166   aaaaggagagagagggattcgaaccctcgatagttcctag-----aactataccggtttt 220
             |||||||||||||||||||||||||||||||||||| | |     |||||||||||||||
Sbjct: 36255 aaaaggagagagagggattcgaaccctcgatagttctttgttcaaaactataccggtttt 36314

                                                 
Query: 221   caagaccggagctatcaaccactcagctatctctcc 256
             ||||||||| ||||||||||||||||| ||||||||
Sbjct: 36315 caagaccggggctatcaaccactcagccatctctcc 36350



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 46265 agagagggattcgaaccctcg 46245



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 8373 agagagggattcgaaccctcg 8393



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 493   agaatcaatggattcatgat 512
             ||||||||||||||||||||
Sbjct: 36581 agaatcaatggattcatgat 36600

---

>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome
          Length = 155461

 Score =  119 bits (60), Expect = 1e-23
 Identities = 87/96 (90%), Gaps = 5/96 (5%)
 Strand = Plus / Plus

                                                                         
Query: 166   aaaaggagagagagggattcgaaccctcgatagttcctag-----aactataccggtttt 220
             |||||||||||||||||||||||||||||||||||| | |     |||||||||||||||
Sbjct: 36252 aaaaggagagagagggattcgaaccctcgatagttctttgttcaaaactataccggtttt 36311

                                                 
Query: 221   caagaccggagctatcaaccactcagctatctctcc 256
             ||||||||| ||||||||||||||||| ||||||||
Sbjct: 36312 caagaccggggctatcaaccactcagccatctctcc 36347



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 46261 agagagggattcgaaccctcg 46241



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 8370 agagagggattcgaaccctcg 8390



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 493   agaatcaatggattcatgat 512
             ||||||||||||||||||||
Sbjct: 36578 agaatcaatggattcatgat 36597

---

>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome
          Length = 155371

 Score =  119 bits (60), Expect = 1e-23
 Identities = 87/96 (90%), Gaps = 5/96 (5%)
 Strand = Plus / Plus

                                                                         
Query: 166   aaaaggagagagagggattcgaaccctcgatagttcctag-----aactataccggtttt 220
             |||||||||||||||||||||||||||||||||||| | |     |||||||||||||||
Sbjct: 36277 aaaaggagagagagggattcgaaccctcgatagttctttgttcaaaactataccggtttt 36336

                                                 
Query: 221   caagaccggagctatcaaccactcagctatctctcc 256
             ||||||||| ||||||||||||||||| ||||||||
Sbjct: 36337 caagaccggggctatcaaccactcagccatctctcc 36372



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 46245 agagagggattcgaaccctcg 46225



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 8385 agagagggattcgaaccctcg 8405



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 493   agaatcaatggattcatgat 512
             ||||||||||||||||||||
Sbjct: 36603 agaatcaatggattcatgat 36622

---

>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome
          Length = 155312

 Score =  119 bits (60), Expect = 1e-23
 Identities = 87/96 (90%), Gaps = 5/96 (5%)
 Strand = Plus / Plus

                                                                         
Query: 166   aaaaggagagagagggattcgaaccctcgatagttcctag-----aactataccggtttt 220
             |||||||||||||||||||||||||||||||||||| | |     |||||||||||||||
Sbjct: 36400 aaaaggagagagagggattcgaaccctcgatagttctttgttcaaaactataccggtttt 36459

                                                 
Query: 221   caagaccggagctatcaaccactcagctatctctcc 256
             ||||||||| ||||||||||||||||| ||||||||
Sbjct: 36460 caagaccggggctatcaaccactcagccatctctcc 36495



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 46399 agagagggattcgaaccctcg 46379



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 8461 agagagggattcgaaccctcg 8481



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 493   agaatcaatggattcatgat 512
             ||||||||||||||||||||
Sbjct: 36726 agaatcaatggattcatgat 36745

---

>gb|AY642482.1| Paphiopedilum niveum tRNA-Ser (trnS) gene and trnS-trnfM intergenic
           spacer, partial sequence; chloroplast
          Length = 958

 Score =  117 bits (59), Expect = 4e-23
 Identities = 83/91 (91%), Gaps = 5/91 (5%)
 Strand = Plus / Plus

                                                                       
Query: 171 gagagagagggattcgaaccctcgatagttcct-----agaactataccggttttcaaga 225
           |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||
Sbjct: 2   gagagagagggattcgaaccctcgatagttccttgttaagaactataccggttttcaaga 61

                                          
Query: 226 ccggagctatcaaccactcagctatctctcc 256
           |||| |||||||||| |||||| ||||||||
Sbjct: 62  ccggggctatcaacccctcagccatctctcc 92

---

>gb|AY642481.1| Paphiopedilum micranthum tRNA-Ser (trnS) gene and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 1008

 Score =  117 bits (59), Expect = 4e-23
 Identities = 83/91 (91%), Gaps = 5/91 (5%)
 Strand = Plus / Plus

                                                                       
Query: 171 gagagagagggattcgaaccctcgatagttcct-----agaactataccggttttcaaga 225
           |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||
Sbjct: 2   gagagagagggattcgaaccctcgatagttccttgttaagaactataccggttttcaaga 61

                                          
Query: 226 ccggagctatcaaccactcagctatctctcc 256
           |||| |||||||||| |||||| ||||||||
Sbjct: 62  ccggggctatcaacccctcagccatctctcc 92

---

>gb|AY642480.1| Paphiopedilum lowii tRNA-Ser (trnS) gene and trnS-trnfM intergenic
           spacer, partial sequence; chloroplast
          Length = 974

 Score =  117 bits (59), Expect = 4e-23
 Identities = 83/91 (91%), Gaps = 5/91 (5%)
 Strand = Plus / Plus

                                                                       
Query: 171 gagagagagggattcgaaccctcgatagttcct-----agaactataccggttttcaaga 225
           |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||
Sbjct: 2   gagagagagggattcgaaccctcgatagttccttgttaagaactataccggttttcaaga 61

                                          
Query: 226 ccggagctatcaaccactcagctatctctcc 256
           |||| |||||||||| |||||| ||||||||
Sbjct: 62  ccggggctatcaacccctcagccatctctcc 92

---

>gb|AY642479.1| Paphiopedilum supardii tRNA-Ser (trnS) gene and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 986

 Score =  117 bits (59), Expect = 4e-23
 Identities = 83/91 (91%), Gaps = 5/91 (5%)
 Strand = Plus / Plus

                                                                       
Query: 171 gagagagagggattcgaaccctcgatagttcct-----agaactataccggttttcaaga 225
           |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||
Sbjct: 2   gagagagagggattcgaaccctcgatagttccttgttaagaactataccggttttcaaga 61

                                          
Query: 226 ccggagctatcaaccactcagctatctctcc 256
           |||| |||||||||| |||||| ||||||||
Sbjct: 62  ccggggctatcaacccctcagccatctctcc 92

---

>gb|AY642477.1| Paphiopedilum hybrid cultivar tRNA-Ser (trnS) gene and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 980

 Score =  117 bits (59), Expect = 4e-23
 Identities = 83/91 (91%), Gaps = 5/91 (5%)
 Strand = Plus / Plus

                                                                       
Query: 171 gagagagagggattcgaaccctcgatagttcct-----agaactataccggttttcaaga 225
           |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||
Sbjct: 2   gagagagagggattcgaaccctcgatagttccttgttaagaactataccggttttcaaga 61

                                          
Query: 226 ccggagctatcaaccactcagctatctctcc 256
           |||| |||||||||| |||||| ||||||||
Sbjct: 62  ccggggctatcaacccctcagccatctctcc 92

---

>gb|AY642476.1| Paphiopedilum philippinense tRNA-Ser (trnS) gene and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 980

 Score =  117 bits (59), Expect = 4e-23
 Identities = 83/91 (91%), Gaps = 5/91 (5%)
 Strand = Plus / Plus

                                                                       
Query: 171 gagagagagggattcgaaccctcgatagttcct-----agaactataccggttttcaaga 225
           |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||
Sbjct: 2   gagagagagggattcgaaccctcgatagttccttgttaagaactataccggttttcaaga 61

                                          
Query: 226 ccggagctatcaaccactcagctatctctcc 256
           |||| |||||||||| |||||| ||||||||
Sbjct: 62  ccggggctatcaacccctcagccatctctcc 92

---

>gb|AY642475.1| Paphiopedilum lowii var. richardianum tRNA-Ser (trnS) gene and
           trnS-trnfM intergenic spacer, partial sequence;
           chloroplast
          Length = 978

 Score =  117 bits (59), Expect = 4e-23
 Identities = 83/91 (91%), Gaps = 5/91 (5%)
 Strand = Plus / Plus

                                                                       
Query: 171 gagagagagggattcgaaccctcgatagttcct-----agaactataccggttttcaaga 225
           |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||
Sbjct: 2   gagagagagggattcgaaccctcgatagttccttgttaagaactataccggttttcaaga 61

                                          
Query: 226 ccggagctatcaaccactcagctatctctcc 256
           |||| |||||||||| |||||| ||||||||
Sbjct: 62  ccggggctatcaacccctcagccatctctcc 92

---

>gb|AY642474.1| Paphiopedilum tonsum var. braemii tRNA-Ser (trnS) gene and
           trnS-trnfM intergenic spacer, partial sequence;
           chloroplast
          Length = 987

 Score =  117 bits (59), Expect = 4e-23
 Identities = 83/91 (91%), Gaps = 5/91 (5%)
 Strand = Plus / Plus

                                                                       
Query: 171 gagagagagggattcgaaccctcgatagttcct-----agaactataccggttttcaaga 225
           |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||
Sbjct: 2   gagagagagggattcgaaccctcgatagttccttgttaagaactataccggttttcaaga 61

                                          
Query: 226 ccggagctatcaaccactcagctatctctcc 256
           |||| |||||||||| |||||| ||||||||
Sbjct: 62  ccggggctatcaacccctcagccatctctcc 92

---

>gb|AY642473.1| Paphiopedilum insigne var. sanderae tRNA-Ser (trnS) gene and
           trnS-trnfM intergenic spacer, partial sequence;
           chloroplast
          Length = 987

 Score =  117 bits (59), Expect = 4e-23
 Identities = 83/91 (91%), Gaps = 5/91 (5%)
 Strand = Plus / Plus

                                                                       
Query: 171 gagagagagggattcgaaccctcgatagttcct-----agaactataccggttttcaaga 225
           |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||
Sbjct: 2   gagagagagggattcgaaccctcgatagttccttgttaagaactataccggttttcaaga 61

                                          
Query: 226 ccggagctatcaaccactcagctatctctcc 256
           |||| |||||||||| |||||| ||||||||
Sbjct: 62  ccggggctatcaacccctcagccatctctcc 92

---

>gb|AY642472.1| Paphiopedilum adductum tRNA-Ser (trnS) gene and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 984

 Score =  117 bits (59), Expect = 4e-23
 Identities = 83/91 (91%), Gaps = 5/91 (5%)
 Strand = Plus / Plus

                                                                       
Query: 171 gagagagagggattcgaaccctcgatagttcct-----agaactataccggttttcaaga 225
           |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||
Sbjct: 2   gagagagagggattcgaaccctcgatagttccttgttaagaactataccggttttcaaga 61

                                          
Query: 226 ccggagctatcaaccactcagctatctctcc 256
           |||| |||||||||| |||||| ||||||||
Sbjct: 62  ccggggctatcaacccctcagccatctctcc 92

---

>gb|AY642471.1| Paphiopedilum insigne tRNA-Ser (trnS) gene and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 987

 Score =  117 bits (59), Expect = 4e-23
 Identities = 83/91 (91%), Gaps = 5/91 (5%)
 Strand = Plus / Plus

                                                                       
Query: 171 gagagagagggattcgaaccctcgatagttcct-----agaactataccggttttcaaga 225
           |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||
Sbjct: 2   gagagagagggattcgaaccctcgatagttccttgttaagaactataccggttttcaaga 61

                                          
Query: 226 ccggagctatcaaccactcagctatctctcc 256
           |||| |||||||||| |||||| ||||||||
Sbjct: 62  ccggggctatcaacccctcagccatctctcc 92

---

>gb|AY642470.1| Paphiopedilum glaucophyllum tRNA-Ser (trnS) gene and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 987

 Score =  117 bits (59), Expect = 4e-23
 Identities = 83/91 (91%), Gaps = 5/91 (5%)
 Strand = Plus / Plus

                                                                       
Query: 171 gagagagagggattcgaaccctcgatagttcct-----agaactataccggttttcaaga 225
           |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||
Sbjct: 2   gagagagagggattcgaaccctcgatagttccttgttaagaactataccggttttcaaga 61

                                          
Query: 226 ccggagctatcaaccactcagctatctctcc 256
           |||| |||||||||| |||||| ||||||||
Sbjct: 62  ccggggctatcaacccctcagccatctctcc 92

---

>gb|AY642469.1| Phragmipedium lindenii tRNA-Ser (trnS) gene and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 1003

 Score =  117 bits (59), Expect = 4e-23
 Identities = 83/91 (91%), Gaps = 5/91 (5%)
 Strand = Plus / Plus

                                                                       
Query: 171 gagagagagggattcgaaccctcgatagttcct-----agaactataccggttttcaaga 225
           |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||
Sbjct: 2   gagagagagggattcgaaccctcgatagttccttgttaagaactataccggttttcaaga 61

                                          
Query: 226 ccggagctatcaaccactcagctatctctcc 256
           |||| |||||||||| |||||| ||||||||
Sbjct: 62  ccggggctatcaacccctcagccatctctcc 92

---

>gb|AY642468.1| Phragmipedium sargentianum tRNA-Ser (trnS) gene and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 1009

 Score =  117 bits (59), Expect = 4e-23
 Identities = 83/91 (91%), Gaps = 5/91 (5%)
 Strand = Plus / Plus

                                                                       
Query: 171 gagagagagggattcgaaccctcgatagttcct-----agaactataccggttttcaaga 225
           |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||
Sbjct: 2   gagagagagggattcgaaccctcgatagttccttgttaagaactataccggttttcaaga 61

                                          
Query: 226 ccggagctatcaaccactcagctatctctcc 256
           |||| |||||||||| |||||| ||||||||
Sbjct: 62  ccggggctatcaacccctcagccatctctcc 92

---

>gb|AY642467.1| Phragmipedium boissierianum tRNA-Ser (trnS) gene and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 1003

 Score =  117 bits (59), Expect = 4e-23
 Identities = 83/91 (91%), Gaps = 5/91 (5%)
 Strand = Plus / Plus

                                                                       
Query: 171 gagagagagggattcgaaccctcgatagttcct-----agaactataccggttttcaaga 225
           |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||
Sbjct: 2   gagagagagggattcgaaccctcgatagttccttgttaagaactataccggttttcaaga 61

                                          
Query: 226 ccggagctatcaaccactcagctatctctcc 256
           |||| |||||||||| |||||| ||||||||
Sbjct: 62  ccggggctatcaacccctcagccatctctcc 92

---

>gb|AY642466.1| Phragmipedium longifolium tRNA-Ser (trnS) gene and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 1003

 Score =  117 bits (59), Expect = 4e-23
 Identities = 83/91 (91%), Gaps = 5/91 (5%)
 Strand = Plus / Plus

                                                                       
Query: 171 gagagagagggattcgaaccctcgatagttcct-----agaactataccggttttcaaga 225
           |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||
Sbjct: 2   gagagagagggattcgaaccctcgatagttccttgttaagaactataccggttttcaaga 61

                                          
Query: 226 ccggagctatcaaccactcagctatctctcc 256
           |||| |||||||||| |||||| ||||||||
Sbjct: 62  ccggggctatcaacccctcagccatctctcc 92

---

>gb|AY642465.1| Phragmipedium caudatum tRNA-Ser (trnS) gene and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 1003

 Score =  117 bits (59), Expect = 4e-23
 Identities = 83/91 (91%), Gaps = 5/91 (5%)
 Strand = Plus / Plus

                                                                       
Query: 171 gagagagagggattcgaaccctcgatagttcct-----agaactataccggttttcaaga 225
           |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||
Sbjct: 2   gagagagagggattcgaaccctcgatagttccttgttaagaactataccggttttcaaga 61

                                          
Query: 226 ccggagctatcaaccactcagctatctctcc 256
           |||| |||||||||| |||||| ||||||||
Sbjct: 62  ccggggctatcaacccctcagccatctctcc 92

---

>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome
          Length = 151104

 Score =  117 bits (59), Expect = 4e-23
 Identities = 104/118 (88%), Gaps = 7/118 (5%)
 Strand = Plus / Plus

                                                                         
Query: 141   aaagaaacaaacgtattcaataagcaaaa--ggagagagagggattcgaaccctcgatag 198
             |||||||||||  ||||||| ||||||||  |||||||||||||||||||||||||||||
Sbjct: 35145 aaagaaacaaatctattcaacaagcaaaaaaggagagagagggattcgaaccctcgatag 35204

                                                                       
Query: 199   ttcctagaactataccggttttcaagaccggagctatcaaccactcagctatctctcc 256
             |      |||||||||||||||||||||||| ||| ||||||||||||| ||||||||
Sbjct: 35205 ta-----aactataccggttttcaagaccggggctttcaaccactcagccatctctcc 35257



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 168   aaggagagagagggattcgaaccctcg 194
             ||||| |||||||||||||||||||||
Sbjct: 45132 aaggaaagagagggattcgaaccctcg 45106



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 8585 agagagggattcgaaccctcg 8605

---

>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA
          Length = 155943

 Score =  115 bits (58), Expect = 1e-22
 Identities = 86/95 (90%), Gaps = 4/95 (4%)
 Strand = Plus / Plus

                                                                         
Query: 166   aaaaggagagagagggattcgaaccctcgatagttcctag----aactataccggttttc 221
             |||||||||||||||||||||||||||||||||||| | |    ||||||||||||||||
Sbjct: 37142 aaaaggagagagagggattcgaaccctcgatagttctttgttaaaactataccggttttc 37201

                                                
Query: 222   aagaccggagctatcaaccactcagctatctctcc 256
             |||||||| |||||||||| |||||| ||||||||
Sbjct: 37202 aagaccggggctatcaaccgctcagccatctctcc 37236



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 47207 agagagggattcgaaccctcg 47187



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 8641 agagagggattcgaaccctcg 8661



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 493   agaatcaatggattcatgat 512
             ||||||||||||||||||||
Sbjct: 37471 agaatcaatggattcatgat 37490

---

>gb|AY936348.1| Cuscuta sandwichiana PsaB (psaB) and Rps14 (rps14) genes, complete
            cds; tRNA-Met and tRNA-Gly genes, complete sequence; Ycf9
            (ycf9) gene, complete cds; tRNA-Ser gene, complete
            sequence; PsbC (psbC) and PsbD (psbD) genes, complete
            cds; tRNA-Thr, tRNA-Glu, tRNA-Tyr, and tRNA-Asp genes,
            complete sequence; and PsbM (psbM) gene, complete cds;
            chloroplast
          Length = 7350

 Score =  115 bits (58), Expect = 1e-22
 Identities = 83/90 (92%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                        
Query: 168  aaggagagagagggattcgaaccctcgatagttcct-agaactataccggttttcaagac 226
            |||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct: 3558 aaggagagagagggattcgaaccctcgatagttctttaaaactataccggttttcaagac 3499

                                          
Query: 227  cggagctatcaaccactcagctatctctcc 256
            ||| ||||| |||| |||||| ||||||||
Sbjct: 3498 cggggctatgaaccgctcagccatctctcc 3469

---

>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome
          Length = 152218

 Score =  115 bits (58), Expect = 1e-22
 Identities = 85/94 (90%), Gaps = 5/94 (5%)
 Strand = Plus / Minus

                                                                         
Query: 169   aggagagagagggattcgaaccctcgatagttcctag-----aactataccggttttcaa 223
             ||||||||||||||||||||||||||||||||| | |     ||||||||||||||||||
Sbjct: 25487 aggagagagagggattcgaaccctcgatagttctttgttccgaactataccggttttcaa 25428

                                               
Query: 224   gaccggagctatcaaccactcagctatctctcca 257
             |||||| ||||||||||||||||| |||||||||
Sbjct: 25427 gaccggggctatcaaccactcagccatctctcca 25394



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 53295 agagagggattcgaaccctcg 53275



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 16092 agagagggattcgaaccctcg 16112

---

>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence
          Length = 155941

 Score =  115 bits (58), Expect = 1e-22
 Identities = 86/95 (90%), Gaps = 4/95 (4%)
 Strand = Plus / Plus

                                                                         
Query: 166   aaaaggagagagagggattcgaaccctcgatagttcctag----aactataccggttttc 221
             |||||||||||||||||||||||||||||||||||| | |    ||||||||||||||||
Sbjct: 37139 aaaaggagagagagggattcgaaccctcgatagttctttgttaaaactataccggttttc 37198

                                                
Query: 222   aagaccggagctatcaaccactcagctatctctcc 256
             |||||||| |||||||||| |||||| ||||||||
Sbjct: 37199 aagaccggggctatcaaccgctcagccatctctcc 37233



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 47205 agagagggattcgaaccctcg 47185



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 8639 agagagggattcgaaccctcg 8659



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 493   agaatcaatggattcatgat 512
             ||||||||||||||||||||
Sbjct: 37468 agaatcaatggattcatgat 37487

---

>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence
          Length = 155745

 Score =  115 bits (58), Expect = 1e-22
 Identities = 86/95 (90%), Gaps = 4/95 (4%)
 Strand = Plus / Plus

                                                                         
Query: 166   aaaaggagagagagggattcgaaccctcgatagttcctag----aactataccggttttc 221
             |||||||||||||||||||||||||||||||||||| | |    ||||||||||||||||
Sbjct: 37072 aaaaggagagagagggattcgaaccctcgatagttctttgttaaaactataccggttttc 37131

                                                
Query: 222   aagaccggagctatcaaccactcagctatctctcc 256
             |||||||| |||||||||| |||||| ||||||||
Sbjct: 37132 aagaccggggctatcaaccgctcagccatctctcc 37166



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 47141 agagagggattcgaaccctcg 47121



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 8573 agagagggattcgaaccctcg 8593



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 493   agaatcaatggattcatgat 512
             ||||||||||||||||||||
Sbjct: 37397 agaatcaatggattcatgat 37416

---

>emb|AJ312393.1|CTR312393 Chloroplast transformation vector pRB95
          Length = 7626

 Score =  115 bits (58), Expect = 1e-22
 Identities = 86/95 (90%), Gaps = 4/95 (4%)
 Strand = Plus / Plus

                                                                        
Query: 166  aaaaggagagagagggattcgaaccctcgatagttcctag----aactataccggttttc 221
            |||||||||||||||||||||||||||||||||||| | |    ||||||||||||||||
Sbjct: 5038 aaaaggagagagagggattcgaaccctcgatagttctttgttaaaactataccggttttc 5097

                                               
Query: 222  aagaccggagctatcaaccactcagctatctctcc 256
            |||||||| |||||||||| |||||| ||||||||
Sbjct: 5098 aagaccggggctatcaaccgctcagccatctctcc 5132



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 493  agaatcaatggattcatgat 512
            ||||||||||||||||||||
Sbjct: 5367 agaatcaatggattcatgat 5386

---

>emb|AJ312392.1|CTR312392 Chloroplast transformation vector pRB94
          Length = 7626

 Score =  115 bits (58), Expect = 1e-22
 Identities = 86/95 (90%), Gaps = 4/95 (4%)
 Strand = Plus / Plus

                                                                        
Query: 166  aaaaggagagagagggattcgaaccctcgatagttcctag----aactataccggttttc 221
            |||||||||||||||||||||||||||||||||||| | |    ||||||||||||||||
Sbjct: 5038 aaaaggagagagagggattcgaaccctcgatagttctttgttaaaactataccggttttc 5097

                                               
Query: 222  aagaccggagctatcaaccactcagctatctctcc 256
            |||||||| |||||||||| |||||| ||||||||
Sbjct: 5098 aagaccggggctatcaaccgctcagccatctctcc 5132



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 493  agaatcaatggattcatgat 512
            ||||||||||||||||||||
Sbjct: 5367 agaatcaatggattcatgat 5386

---

>emb|AJ312391.1|CTR312391 Chloroplast transformation vector pRB70
          Length = 7454

 Score =  115 bits (58), Expect = 1e-22
 Identities = 86/95 (90%), Gaps = 4/95 (4%)
 Strand = Plus / Plus

                                                                        
Query: 166  aaaaggagagagagggattcgaaccctcgatagttcctag----aactataccggttttc 221
            |||||||||||||||||||||||||||||||||||| | |    ||||||||||||||||
Sbjct: 5105 aaaaggagagagagggattcgaaccctcgatagttctttgttaaaactataccggttttc 5164

                                               
Query: 222  aagaccggagctatcaaccactcagctatctctcc 256
            |||||||| |||||||||| |||||| ||||||||
Sbjct: 5165 aagaccggggctatcaaccgctcagccatctctcc 5199



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 493  agaatcaatggattcatgat 512
            ||||||||||||||||||||
Sbjct: 5434 agaatcaatggattcatgat 5453

---

>gb|M16911.1|TOBCPSA Tobacco Ser-tRNA gene
          Length = 364

 Score =  115 bits (58), Expect = 1e-22
 Identities = 86/95 (90%), Gaps = 4/95 (4%)
 Strand = Plus / Minus

                                                                       
Query: 166 aaaaggagagagagggattcgaaccctcgatagttcctag----aactataccggttttc 221
           |||||||||||||||||||||||||||||||||||| | |    ||||||||||||||||
Sbjct: 186 aaaaggagagagagggattcgaaccctcgatagttctttgttaaaactataccggttttc 127

                                              
Query: 222 aagaccggagctatcaaccactcagctatctctcc 256
           |||||||| |||||||||| |||||| ||||||||
Sbjct: 126 aagaccggggctatcaaccgctcagccatctctcc 92

---

>emb|AJ879453.1| Acorus calamus chloroplast, complete genome
          Length = 153821

 Score =  113 bits (57), Expect = 6e-22
 Identities = 93/105 (88%), Gaps = 5/105 (4%)
 Strand = Plus / Plus

                                                                         
Query: 157   tcaataagcaaaaggagagagagggattcgaaccctcgatagttccta-----gaactat 211
             |||| ||| ||||||||||||||||||||||||||||||||||||  |     |||||||
Sbjct: 35957 tcaacaagtaaaaggagagagagggattcgaaccctcgatagttctgaacaaagaactat 36016

                                                          
Query: 212   accggttttcaagaccggagctatcaaccactcagctatctctcc 256
              |||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 36017 gccggttttcaagaccggagctatcaaccactcggccatctctcc 36061



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                     
Query: 170  ggagagagagggattcgaaccctcg 194
            |||||||||||||||||||||||||
Sbjct: 8159 ggagagagagggattcgaaccctcg 8183



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 45784 agagagggattcgaaccctcg 45764

---

>gb|AY497341.1| Castanea sativa clone Cmcs2 psbC-trnS intergenic spacer and
           microsatellite sequence; plastid
          Length = 240

 Score =  111 bits (56), Expect = 2e-21
 Identities = 77/84 (91%), Gaps = 5/84 (5%)
 Strand = Plus / Plus

                                                                       
Query: 166 aaaaggagagagagggattcgaaccctcgatagttcctag-----aactataccggtttt 220
           |||||||||||||||||||||||||||||||||||| | |     |||||||||||||||
Sbjct: 122 aaaaggagagagagggattcgaaccctcgatagttctttgtttcgaactataccggtttt 181

                                   
Query: 221 caagaccggagctatcaaccactc 244
           ||||||||||||||||||||||||
Sbjct: 182 caagaccggagctatcaaccactc 205

---

>dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complete sequence
          Length = 119707

 Score =  111 bits (56), Expect = 2e-21
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                         
Query: 165   caaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttcaag 224
             ||||||||||||||||||||||||||||||||||||  |  | |||||||||||||||||
Sbjct: 79956 caaaaggagagagagggattcgaaccctcgatagtttttttatctataccggttttcaag 79897

                                             
Query: 225   accggagctatcaaccactcagctatctctcc 256
             |||||||| || |||||||| || ||||||||
Sbjct: 79896 accggagccattaaccactcggccatctctcc 79865



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 170   ggagagagagggattcgaaccctcg 194
             |||||||||||||||||||||||||
Sbjct: 51835 ggagagagagggattcgaaccctcg 51811



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                     
Query: 170  ggagagagagggattcgaaccctcg 194
            |||||||||||||||||||||||||
Sbjct: 7893 ggagagagagggattcgaaccctcg 7917



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 70445 agagagggattcgaaccctcg 70465

---

>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome
          Length = 152772

 Score =  109 bits (55), Expect = 9e-21
 Identities = 82/91 (90%), Gaps = 5/91 (5%)
 Strand = Plus / Plus

                                                                         
Query: 166   aaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttcaaga 225
             ||||||||||||||||||||||||||||||||||      ||||||||||||||||||||
Sbjct: 35118 aaaaggagagagagggattcgaaccctcgatagta-----aactataccggttttcaaga 35172

                                            
Query: 226   ccggagctatcaaccactcagctatctctcc 256
             |||| ||| ||||||||||||| ||||||||
Sbjct: 35173 ccggggctttcaaccactcagccatctctcc 35203



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 167   aaaggagagagagggattcgaaccctcg 194
             |||||| |||||||||||||||||||||
Sbjct: 45093 aaaggaaagagagggattcgaaccctcg 45066



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 8554 agagagggattcgaaccctcg 8574

---

>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence,
             strain:Columbia
          Length = 154478

 Score =  109 bits (55), Expect = 9e-21
 Identities = 86/96 (89%), Gaps = 4/96 (4%)
 Strand = Plus / Plus

                                                                         
Query: 165   caaaaggagagagagggattcgaaccctcgatagttccta----gaactataccggtttt 220
             ||||||||||||||||||||||||||||||||||||  |     ||||||||||||||||
Sbjct: 35308 caaaaggagagagagggattcgaaccctcgatagttatttttatgaactataccggtttt 35367

                                                 
Query: 221   caagaccggagctatcaaccactcagctatctctcc 256
             |||||||||||| ||||||||||| || ||||||||
Sbjct: 35368 caagaccggagccatcaaccactcggccatctctcc 35403



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 44908 agagagggattcgaaccctcg 44888



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 7790 agagagggattcgaaccctcg 7810



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 59    ttctggctcggttattctatctagccgagcca 90
             ||||||||||| ||| ||||| ||||||||||
Sbjct: 35211 ttctggctcggctatactatccagccgagcca 35242

---

>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome
          Length = 152765

 Score =  109 bits (55), Expect = 9e-21
 Identities = 82/91 (90%), Gaps = 5/91 (5%)
 Strand = Plus / Plus

                                                                         
Query: 166   aaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttcaaga 225
             ||||||||||||||||||||||||||||||||||      ||||||||||||||||||||
Sbjct: 35117 aaaaggagagagagggattcgaaccctcgatagta-----aactataccggttttcaaga 35171

                                            
Query: 226   ccggagctatcaaccactcagctatctctcc 256
             |||| ||| ||||||||||||| ||||||||
Sbjct: 35172 ccggggctttcaaccactcagccatctctcc 35202



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 167   aaaggagagagagggattcgaaccctcg 194
             |||||| |||||||||||||||||||||
Sbjct: 45092 aaaggaaagagagggattcgaaccctcg 45065



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 8554 agagagggattcgaaccctcg 8574

---

>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence
          Length = 153482

 Score =  107 bits (54), Expect = 4e-20
 Identities = 87/98 (88%), Gaps = 5/98 (5%)
 Strand = Plus / Plus

                                                                         
Query: 165   caaaaggagagagagggattcgaaccctcgatagttccta-----gaactataccggttt 219
             ||||||||||||||||||||||||||||||||||||  |      |||||||||||||||
Sbjct: 34496 caaaaggagagagagggattcgaaccctcgatagttattttttatgaactataccggttt 34555

                                                   
Query: 220   tcaagaccggagctatcaaccactcagctatctctcca 257
             ||||||||||||| ||||||||||| || |||||||||
Sbjct: 34556 tcaagaccggagccatcaaccactcggccatctctcca 34593



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 44083 agagagggattcgaaccctcg 44063



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 7643 agagagggattcgaaccctcg 7663

---

>dbj|AB086179.1| Anthoceros formosae chloroplast DNA, complete genome
          Length = 161162

 Score =  103 bits (52), Expect = 6e-19
 Identities = 79/88 (89%)
 Strand = Plus / Plus

                                                                         
Query: 169   aggagagagagggattcgaaccctcgatagttcctagaactataccggttttcaagaccg 228
             ||||||||||||||||||||||||||||||||     |||||||||| ||||||||||||
Sbjct: 52624 aggagagagagggattcgaaccctcgatagtttgataaactataccgattttcaagaccg 52683

                                         
Query: 229   gagctatcaaccactcagctatctctcc 256
             ||||||| ||||||||||  ||||||||
Sbjct: 52684 gagctataaaccactcagacatctctcc 52711



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 170   ggagagagagggattcgaaccctcg 194
             |||||||||||||||||||||||||
Sbjct: 22684 ggagagagagggattcgaaccctcg 22660



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 168   aaggagagagagggattcgaaccctcg 194
             ||||| |||||||||||||||||||||
Sbjct: 62700 aaggaaagagagggattcgaaccctcg 62674

---

>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome
          Length = 160286

 Score =  103 bits (52), Expect = 6e-19
 Identities = 85/96 (88%), Gaps = 5/96 (5%)
 Strand = Plus / Plus

                                                                         
Query: 166   aaaaggagagagagggattcgaaccctcgatagttcctag-----aactataccggtttt 220
             |||||||||||||||||||||||||||||||||||  | |     |||||||||||||||
Sbjct: 38658 aaaaggagagagagggattcgaaccctcgatagttttttgttacgaactataccggtttt 38717

                                                 
Query: 221   caagaccggagctatcaaccactcagctatctctcc 256
             |||||||||||| ||||||||||| || ||||||||
Sbjct: 38718 caagaccggagccatcaaccactcggccatctctcc 38753



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 49047 agagagggattcgaaccctcg 49027



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agagagggattcgaaccctcg 194
            |||||||||||||||||||||
Sbjct: 8914 agagagggattcgaaccctcg 8934

---

>gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome
          Length = 116866

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 80/89 (89%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                         
Query: 169   aggagagagagggattcgaaccctcgatagttcctaga-actataccggttttcaagacc 227
             ||||||||||||||||||||||||||||||||  |    |||||||||||||||||||||
Sbjct: 77863 aggagagagagggattcgaaccctcgatagtttttttttactataccggttttcaagacc 77804

                                          
Query: 228   ggagctatcaaccactcagctatctctcc 256
             ||||| ||||||||||| || ||||||||
Sbjct: 77803 ggagccatcaaccactcggccatctctcc 77775



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 170   ggagagagagggattcgaaccctcg 194
             |||||||||||||||||||||||||
Sbjct: 49857 ggagagagagggattcgaaccctcg 49833



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                     
Query: 170  ggagagagagggattcgaaccctcg 194
            |||||||||||||||||||||||||
Sbjct: 7703 ggagagagagggattcgaaccctcg 7727



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 68480 agagagggattcgaaccctcg 68500

---

>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete
             sequence
          Length = 163935

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 84/96 (87%), Gaps = 5/96 (5%)
 Strand = Plus / Minus

                                                                         
Query: 166   aaaaggagagagagggattcgaaccctcgatagttcctag-----aactataccggtttt 220
             |||||||||||||||||||||||||||||||| ||| | |     |||||| ||||||||
Sbjct: 29802 aaaaggagagagagggattcgaaccctcgataattctttgttacgaactatgccggtttt 29743

                                                 
Query: 221   caagaccggagctatcaaccactcagctatctctcc 256
             |||||||||||| ||||||||||| || ||||||||
Sbjct: 29742 caagaccggagccatcaaccactcggccatctctcc 29707



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 58559 agagagggattcgaaccctcg 58539



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 174   agagagggattcgaaccctcg 194
             |||||||||||||||||||||
Sbjct: 19691 agagagggattcgaaccctcg 19711

---

>gb|M81884.1|EPFCPCG Epifagus virginiana chloroplast, complete genome
          Length = 70028

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 83/96 (86%), Gaps = 5/96 (5%)
 Strand = Plus / Plus

                                                                        
Query: 167  aaaggagagagagggattcgaaccctcgatagttcct-----agaactataccggttttc 221
            ||||||||||||||| ||||||||| ||||||||  |     | ||||||||||||||||
Sbjct: 5055 aaaggagagagaggggttcgaacccccgatagttttttattaaaaactataccggttttc 5114

                                                
Query: 222  aagaccggagctatcaaccactcagctatctctcca 257
            ||| |||| ||||||||||||||||| |||||||||
Sbjct: 5115 aaggccggggctatcaaccactcagccatctctcca 5150

---

>emb|X61798.1|CHEVRPS E.virginiana plastid rps14, rps2 and tRNA genes for ribosomal
           proteins S14/S2 and tRNA-Ser, tRNA-fMet, tRNA-Glu,
           tRNA-Tyr, tRNA-Asp, tRNA-Asn, tRNA-Cys and tRNA-Arg
          Length = 3900

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 83/96 (86%), Gaps = 5/96 (5%)
 Strand = Plus / Minus

                                                                       
Query: 167 aaaggagagagagggattcgaaccctcgatagttcct-----agaactataccggttttc 221
           ||||||||||||||| ||||||||| ||||||||  |     | ||||||||||||||||
Sbjct: 915 aaaggagagagaggggttcgaacccccgatagttttttattaaaaactataccggttttc 856

                                               
Query: 222 aagaccggagctatcaaccactcagctatctctcca 257
           ||| |||| ||||||||||||||||| |||||||||
Sbjct: 855 aaggccggggctatcaaccactcagccatctctcca 820

---

>emb|AJ427520.1|ENA427520 Eritrichium nanum chloroplast tRNA-Ser(UGA) (partial),
           tRNA-Gly(GCC), tRNA-fMet(CAU) (partial) genes, specimen
           voucher Population 25
          Length = 1113

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 50/52 (96%)
 Strand = Plus / Plus

                                                               
Query: 206 aactataccggttttcaagaccggagctatcaaccactcagctatctctcca 257
           |||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 18  aactataccggttttcaagaccggggctatcaaccactcagccatctctcca 69

---

>emb|AJ427519.1|ENA427519 Eritrichium nanum chloroplast tRNA-Ser(UGA) (partial),
           tRNA-Gly(GCC), tRNA-fMet(CAU) (partial) genes, specimen
           voucher Population 24
          Length = 1118

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 50/52 (96%)
 Strand = Plus / Plus

                                                               
Query: 206 aactataccggttttcaagaccggagctatcaaccactcagctatctctcca 257
           |||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 18  aactataccggttttcaagaccggggctatcaaccactcagccatctctcca 69

---

>emb|AJ427518.1|ENA427518 Eritrichium nanum chloroplast tRNA-Ser(UGA) (partial),
           tRNA-Gly(GCC), tRNA-fMet(CAU) (partial) genes, specimen
           voucher Population 06
          Length = 1112

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 50/52 (96%)
 Strand = Plus / Plus

                                                               
Query: 206 aactataccggttttcaagaccggagctatcaaccactcagctatctctcca 257
           |||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 18  aactataccggttttcaagaccggggctatcaaccactcagccatctctcca 69

---

>emb|AJ427517.1|ENA427517 Eritrichium nanum chloroplast tRNA-Ser(UGA) (partial),
           tRNA-Gly(GCC), tRNA-fMet(CAU) (partial) genes, specimen
           voucher Population 05
          Length = 1112

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 50/52 (96%)
 Strand = Plus / Plus

                                                               
Query: 206 aactataccggttttcaagaccggagctatcaaccactcagctatctctcca 257
           |||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 18  aactataccggttttcaagaccggggctatcaaccactcagccatctctcca 69

---

>emb|AJ427516.1|ENA427516 Eritrichium nanum chloroplast tRNA-Ser(UGA) (partial),
           tRNA-Gly(GCC), tRNA-fMet(CAU) (partial) genes, specimen
           voucher Population 04
          Length = 1117

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 50/52 (96%)
 Strand = Plus / Plus

                                                               
Query: 206 aactataccggttttcaagaccggagctatcaaccactcagctatctctcca 257
           |||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 18  aactataccggttttcaagaccggggctatcaaccactcagccatctctcca 69

---

>emb|AJ427515.1|ENA427515 Eritrichium nanum chloroplast tRNA-Ser(UGA) (partial),
           tRNA-Gly(GCC), tRNA-fMet(CAU) (partial) genes, specimen
           voucher Population 03
          Length = 1117

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 50/52 (96%)
 Strand = Plus / Plus

                                                               
Query: 206 aactataccggttttcaagaccggagctatcaaccactcagctatctctcca 257
           |||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 18  aactataccggttttcaagaccggggctatcaaccactcagccatctctcca 69

---

>emb|AJ427514.1|ENA427514 Eritrichium nanum chloroplast tRNA-Ser(UGA) (partial),
           tRNA-Gly(GCC), tRNA-fMet(CAU) (partial) genes, specimen
           voucher Population 02
          Length = 1114

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 50/52 (96%)
 Strand = Plus / Plus

                                                               
Query: 206 aactataccggttttcaagaccggagctatcaaccactcagctatctctcca 257
           |||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 18  aactataccggttttcaagaccggggctatcaaccactcagccatctctcca 69

---

>gb|AC099324.5| Oryza sativa chromosome 3 BAC OSJNBb0043P23 genomic sequence, complete
             sequence
          Length = 116443

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                         
Query: 322   taacctctagaaagatatcagatacaagttccttttcgatatatctctgtatactgtata 381
             ||||||||||||| || ||| |||||| | |||||||||||||| ||| |||||||||| 
Sbjct: 68723 taacctctagaaacatctcaaatacaaatcccttttcgatatatttctatatactgtatc 68664

                                   
Query: 382   cacggatacaggatccgctata 403
             || | |||||||||||||||||
Sbjct: 68663 catgtatacaggatccgctata 68642

---

>gb|AY337650.1| Pandanus maximus isolate Sp_8 chloroplast trnS-ycf9 intergenic
           spacer, complete sequence
          Length = 497

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 71/81 (87%)
 Strand = Plus / Plus

                                                                       
Query: 211 taccggttttcaagaccggagctatcaaccactcagctatctctccaccgcctaatcctt 270
           ||||||||||||||||||| ||||||||||||||||| |||||||||     ||||| ||
Sbjct: 1   taccggttttcaagaccggggctatcaaccactcagccatctctccaagaggtaatcttt 60

                                
Query: 271 attttactcctacaaatagaa 291
           ||||||| ||||| |||||||
Sbjct: 61  attttacccctacgaatagaa 81



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 492 aagaatcaatggattcatgattaaa 516
           |||||||||| ||||||||||||||
Sbjct: 260 aagaatcaattgattcatgattaaa 284

---

>gb|AY337649.1| Pandanus odoratissimus isolate Sp_7 chloroplast trnS-ycf9
           intergenic spacer, complete sequence
          Length = 496

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 71/81 (87%)
 Strand = Plus / Plus

                                                                       
Query: 211 taccggttttcaagaccggagctatcaaccactcagctatctctccaccgcctaatcctt 270
           ||||||||||||||||||| ||||||||||||||||| |||||||||     ||||| ||
Sbjct: 1   taccggttttcaagaccggggctatcaaccactcagccatctctccaagaggtaatcttt 60

                                
Query: 271 attttactcctacaaatagaa 291
           ||||||| ||||| |||||||
Sbjct: 61  attttacccctacgaatagaa 81



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 492 aagaatcaatggattcatgattaaa 516
           |||||||||| ||||||||||||||
Sbjct: 260 aagaatcaattgattcatgattaaa 284

---

>gb|AF494278.1| Chaetosphaeridium globosum chloroplast, complete genome
          Length = 131183

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 70/77 (90%), Gaps = 2/77 (2%)
 Strand = Plus / Minus

                                                                         
Query: 169   aggagagagagggattcgaaccctcgatagttcctagaa-ctataccggttttcaagacc 227
             |||||||||||||||||||||||||| |||| | ||||| |||  |||||||||||||||
Sbjct: 60526 aggagagagagggattcgaaccctcggtagt-cttagaaactacgccggttttcaagacc 60468

                              
Query: 228   ggagctatcaaccactc 244
             ||||| |||||||||||
Sbjct: 60467 ggagccatcaaccactc 60451



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 170   ggagagagagggattcgaaccctcg 194
             |||||||||||||||||||||||||
Sbjct: 29054 ggagagagagggattcgaaccctcg 29078



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   gagagggattcgaaccctcg 194
             ||||||||||||||||||||
Sbjct: 47661 gagagggattcgaaccctcg 47642

---

>gb|AF301469.1|AF301469 Spiranthes vernalis tRNA-Ser gene, partial sequence; chloroplast
           gene for chloroplast product
          Length = 476

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 75/86 (87%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                       
Query: 171 gagagagagggattcgaaccctcgatagttcctagaactataccggttttcaagaccgga 230
           ||||||||||||||||||||||  |  |||   | |||||||||||||||||||||||| 
Sbjct: 1   gagagagagggattcgaaccctn-anggttatgaaaactataccggttttcaagaccggg 59

                                     
Query: 231 gctatcaaccactcagctatctctcc 256
           ||||| ||||||||||| ||||||||
Sbjct: 60  gctattaaccactcagccatctctcc 85

---

>gb|AF301468.1|AF301468 Spiranthes romanzoffiana tRNA-Ser gene, partial sequence;
           chloroplast gene for chloroplast product
          Length = 483

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 75/86 (87%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                       
Query: 171 gagagagagggattcgaaccctcgatagttcctagaactataccggttttcaagaccgga 230
           ||||||||||||||||||||||  |  |||   | |||||||||||||||||||||||| 
Sbjct: 1   gagagagagggattcgaaccctn-anggttatgaaaactataccggttttcaagaccggg 59

                                     
Query: 231 gctatcaaccactcagctatctctcc 256
           ||||| ||||||||||| ||||||||
Sbjct: 60  gctattaaccactcagccatctctcc 85

---

>gb|AF301467.1|AF301467 Spiranthes magnicamporum tRNA-Ser gene, partial sequence;
           chloroplast gene for chloroplast product
          Length = 476

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 75/86 (87%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                       
Query: 171 gagagagagggattcgaaccctcgatagttcctagaactataccggttttcaagaccgga 230
           ||||||||||||||||||||||  |  |||   | |||||||||||||||||||||||| 
Sbjct: 1   gagagagagggattcgaaccctn-anggttatgaaaactataccggttttcaagaccggg 59

                                     
Query: 231 gctatcaaccactcagctatctctcc 256
           ||||| ||||||||||| ||||||||
Sbjct: 60  gctattaaccactcagccatctctcc 85

---

>gb|AF301466.1|AF301466 Spiranthes diluvialis tRNA-Ser gene, partial sequence; chloroplast
           gene for chloroplast product
          Length = 483

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 75/86 (87%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                       
Query: 171 gagagagagggattcgaaccctcgatagttcctagaactataccggttttcaagaccgga 230
           ||||||||||||||||||||||  |  |||   | |||||||||||||||||||||||| 
Sbjct: 1   gagagagagggattcgaaccctn-anggttatgaaaactataccggttttcaagaccggg 59

                                     
Query: 231 gctatcaaccactcagctatctctcc 256
           ||||| ||||||||||| ||||||||
Sbjct: 60  gctattaaccactcagccatctctcc 85

---

>gb|AF301465.1|AF301465 Spiranthes cernua tRNA-Ser gene, partial sequence; chloroplast gene
           for chloroplast product
          Length = 502

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 75/86 (87%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                       
Query: 171 gagagagagggattcgaaccctcgatagttcctagaactataccggttttcaagaccgga 230
           ||||||||||||||||||||||  |  |||   | |||||||||||||||||||||||| 
Sbjct: 1   gagagagagggattcgaaccctn-anggttatgaaaactataccggttttcaagaccggg 59

                                     
Query: 231 gctatcaaccactcagctatctctcc 256
           ||||| ||||||||||| ||||||||
Sbjct: 60  gctattaaccactcagccatctctcc 85

---

>gb|AF301464.1|AF301464 Platanthera praeclara tRNA-Ser gene, partial sequence; chloroplast
           gene for chloroplast product
          Length = 480

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 75/86 (87%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                       
Query: 171 gagagagagggattcgaaccctcgatagttcctagaactataccggttttcaagaccgga 230
           ||||||||||||||||||||||  |  |||   | |||||||||||||||||||||||| 
Sbjct: 1   gagagagagggattcgaaccctn-anggttatgaaaactataccggttttcaagaccggg 59

                                     
Query: 231 gctatcaaccactcagctatctctcc 256
           ||||| ||||||||||| ||||||||
Sbjct: 60  gctattaaccactcagccatctctcc 85

---

>gb|AY660566.1| Huperzia lucidula chloroplast, complete genome
          Length = 154373

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 81/94 (86%), Gaps = 3/94 (3%)
 Strand = Plus / Minus

                                                                         
Query: 166   aaaaggagagagagggattcgaaccctcgatagttcctaga---actataccggttttca 222
             ||||||||||||||||||||||||||||||||||    | |   ||||||||||||||||
Sbjct: 53271 aaaaggagagagagggattcgaaccctcgatagtattgaaaaatactataccggttttca 53212

                                               
Query: 223   agaccggagctatcaaccactcagctatctctcc 256
             ||||| | ||||| |||||||| || ||||||||
Sbjct: 53211 agaccagggctataaaccactcggccatctctcc 53178



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 170   ggagagagagggattcgaaccctcg 194
             |||||||||||||||||||||||||
Sbjct: 75344 ggagagagagggattcgaaccctcg 75368



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 170   ggagagagagggattcgaaccctcg 194
             |||||||||||||||||||||||||
Sbjct: 43749 ggagagagagggattcgaaccctcg 43773

---

>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome
          Length = 122890

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 80/92 (86%), Gaps = 1/92 (1%)
 Strand = Plus / Minus

                                                                         
Query: 166   aaaaggagagagagggattcgaaccctcgatag-ttcctagaactataccggttttcaag 224
             ||||||||||||||||||||||||||||||||| ||   | |||||| | ||||||||||
Sbjct: 41940 aaaaggagagagagggattcgaaccctcgatagttttgaaaaactatgctggttttcaag 41881

                                             
Query: 225   accggagctatcaaccactcagctatctctcc 256
             ||| |||| || |||||||| || ||||||||
Sbjct: 41880 accagagccataaaccactcggccatctctcc 41849



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                         
Query: 167   aaaggagagagagggattcgaaccctcg 194
             ||||||||||||||||||||||||||||
Sbjct: 60193 aaaggagagagagggattcgaaccctcg 60220



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 166   aaaaggagagagagggattcgaaccctcg 194
             ||||||| |||||||||||||||||||||
Sbjct: 33309 aaaaggaaagagagggattcgaaccctcg 33337

---

>dbj|AB084146.1| Prunus salicina PS-Se gene for Se-RNase, partial cds
          Length = 1951

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 68/78 (87%), Gaps = 5/78 (6%)
 Strand = Plus / Minus

                                                                        
Query: 171  gagagagagggattcgaaccctcgatagttcctag-----aactataccggttttcaaga 225
            |||||||||||||||||| |||||||||||| | |     |||||||| |||||||||||
Sbjct: 1593 gagagagagggattcgaaacctcgatagttctttgtttcgaactatactggttttcaaga 1534

                              
Query: 226  ccggagctatcaaccact 243
            ||| ||||||||||||||
Sbjct: 1533 ccgaagctatcaaccact 1516

---

>gb|AY337664.1| Pandanus princeps isolate Sp_22 chloroplast trnS-ycf9 intergenic
           spacer, complete sequence
          Length = 496

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 70/81 (86%)
 Strand = Plus / Plus

                                                                       
Query: 211 taccggttttcaagaccggagctatcaaccactcagctatctctccaccgcctaatcctt 270
           ||||||||| ||||||||| ||||||||||||||||| |||||||||     ||||| ||
Sbjct: 1   taccggtttccaagaccggggctatcaaccactcagccatctctccaagaggtaatcttt 60

                                
Query: 271 attttactcctacaaatagaa 291
           ||||||| ||||| |||||||
Sbjct: 61  attttacccctacgaatagaa 81



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 492 aagaatcaatggattcatgattaaa 516
           |||||||||| ||||||||||||||
Sbjct: 260 aagaatcaattgattcatgattaaa 284

---

>gb|AY337659.1| Sararanga philippinensis isolate Sp_17 chloroplast trnS-ycf9
           intergenic spacer, complete sequence
          Length = 477

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 70/81 (86%)
 Strand = Plus / Plus

                                                                       
Query: 211 taccggttttcaagaccggagctatcaaccactcagctatctctccaccgcctaatcctt 270
           ||||||||||||||||||| |||||||||| |||||| |||||||||     ||||| ||
Sbjct: 1   taccggttttcaagaccggggctatcaaccgctcagccatctctccaagaggtaatcttt 60

                                
Query: 271 attttactcctacaaatagaa 291
           ||||||| ||||| |||||||
Sbjct: 61  attttacccctacgaatagaa 81



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 492 aagaatcaatggattcatgattaaa 516
           |||||||||| ||||||||||||||
Sbjct: 240 aagaatcaattgattcatgattaaa 264

---

>gb|AY337651.1| Pandanus peyrierasii isolate Sp_9 chloroplast trnS-ycf9 intergenic
           spacer, complete sequence
          Length = 497

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 70/81 (86%)
 Strand = Plus / Plus

                                                                       
Query: 211 taccggttttcaagaccggagctatcaaccactcagctatctctccaccgcctaatcctt 270
           ||||||||| ||||||||| ||||||||||||||||| |||||||||     ||||| ||
Sbjct: 1   taccggtttccaagaccggggctatcaaccactcagccatctctccaagaggtaatcttt 60

                                
Query: 271 attttactcctacaaatagaa 291
           ||||||| ||||| |||||||
Sbjct: 61  attttacccctacgaatagaa 81



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 492 aagaatcaatggattcatgattaaa 516
           |||||||||| ||||||||||||||
Sbjct: 262 aagaatcaattgattcatgattaaa 286

---

>gb|AY337648.1| Pandanus linguiformis isolate Sp_6 chloroplast trnS-ycf9 intergenic
           spacer, complete sequence
          Length = 496

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 70/81 (86%)
 Strand = Plus / Plus

                                                                       
Query: 211 taccggttttcaagaccggagctatcaaccactcagctatctctccaccgcctaatcctt 270
           ||||||||| ||||||||| ||||||||||||||||| |||||||||     ||||| ||
Sbjct: 1   taccggtttccaagaccggggctatcaaccactcagccatctctccaagaggtaatcttt 60

                                
Query: 271 attttactcctacaaatagaa 291
           ||||||| ||||| |||||||
Sbjct: 61  attttacccctacgaatagaa 81



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 492 aagaatcaatggattcatgattaaa 516
           |||||||||| ||||||||||||||
Sbjct: 260 aagaatcaattgattcatgattaaa 284

---

>gb|AY337643.1| Pandanus microcarpus isolate Sp_1 chloroplast trnS-ycf9 intergenic
           spacer, complete sequence
          Length = 499

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 70/81 (86%)
 Strand = Plus / Plus

                                                                       
Query: 211 taccggttttcaagaccggagctatcaaccactcagctatctctccaccgcctaatcctt 270
           ||||||||| ||||||||| ||||||||||||||||| |||||||||     ||||| ||
Sbjct: 1   taccggtttccaagaccggggctatcaaccactcagccatctctccaagaggtaatcttt 60

                                
Query: 271 attttactcctacaaatagaa 291
           ||||||| ||||| |||||||
Sbjct: 61  attttacccctacgaatagaa 81



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 492 aagaatcaatggattcatgattaaa 516
           |||||||||| ||||||||||||||
Sbjct: 260 aagaatcaattgattcatgattaaa 284

---

>dbj|AB234788.1| Chrysanthemum zawadskii chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population K05, partial
           sequence
          Length = 227

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 191 aaaaggagagagagggattcgaaccctcgatagttc 226

---

>dbj|AB234787.1| Chrysanthemum zawadskii chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population K04, partial
           sequence
          Length = 227

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 191 aaaaggagagagagggattcgaaccctcgatagttc 226

---

>dbj|AB234786.1| Chrysanthemum zawadskii chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population K03, partial
           sequence
          Length = 220

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 184 aaaaggagagagagggattcgaaccctcgatagttc 219

---

>dbj|AB234785.1| Chrysanthemum zawadskii chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population K02, partial
           sequence
          Length = 227

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 191 aaaaggagagagagggattcgaaccctcgatagttc 226

---

>dbj|AB234784.1| Chrysanthemum zawadskii chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population K01, partial
           sequence
          Length = 227

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 191 aaaaggagagagagggattcgaaccctcgatagttc 226

---

>dbj|AB234824.1| Nipponanthemum nipponicum chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population Nippo,
           partial sequence
          Length = 226

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 190 aaaaggagagagagggattcgaaccctcgatagttc 225

---

>dbj|AB234823.1| Ajania shiwogiku var. kinokuniensis chloroplast gene for psbC-trnS
           intergenic spacer, tRNA-Ser (UGA), partial sequence
          Length = 228

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 192 aaaaggagagagagggattcgaaccctcgatagttc 227

---

>dbj|AB234822.1| Chrysanthemum arisanense chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population T03, partial
           sequence
          Length = 228

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 192 aaaaggagagagagggattcgaaccctcgatagttc 227

---

>dbj|AB234821.1| Chrysanthemum arisanense chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population T02, partial
           sequence
          Length = 229

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 193 aaaaggagagagagggattcgaaccctcgatagttc 228

---

>dbj|AB234820.1| Chrysanthemum indicum chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population T01, partial
           sequence
          Length = 229

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 193 aaaaggagagagagggattcgaaccctcgatagttc 228

---

>dbj|AB234819.1| Chrysanthemum boreale chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population C03, partial
           sequence
          Length = 227

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 191 aaaaggagagagagggattcgaaccctcgatagttc 226

---

>dbj|AB234818.1| Chrysanthemum indicum chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population C02, partial
           sequence
          Length = 228

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 192 aaaaggagagagagggattcgaaccctcgatagttc 227

---

>dbj|AB234817.1| Chrysanthemum indicum chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population C01, partial
           sequence
          Length = 228

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 192 aaaaggagagagagggattcgaaccctcgatagttc 227

---

>dbj|AB234815.1| Chrysanthemum weyrichii chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population J09, partial
           sequence
          Length = 227

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 191 aaaaggagagagagggattcgaaccctcgatagttc 226

---

>dbj|AB234814.1| Chrysanthemum rupestre chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population J08, partial
           sequence
          Length = 227

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 191 aaaaggagagagagggattcgaaccctcgatagttc 226

---

>dbj|AB234813.1| Chrysanthemum japonense chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population J07, partial
           sequence
          Length = 231

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 195 aaaaggagagagagggattcgaaccctcgatagttc 230

---

>dbj|AB234812.1| Chrysanthemum japonense chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population J06, partial
           sequence
          Length = 227

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 191 aaaaggagagagagggattcgaaccctcgatagttc 226

---

>dbj|AB234811.1| Chrysanthemum indicum chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population J05, partial
           sequence
          Length = 228

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 192 aaaaggagagagagggattcgaaccctcgatagttc 227

---

>dbj|AB234810.1| Chrysanthemum boreale chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population J04, partial
           sequence
          Length = 229

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 193 aaaaggagagagagggattcgaaccctcgatagttc 228

---

>dbj|AB234809.1| Chrysanthemum zawadskii chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population J03, partial
           sequence
          Length = 229

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 193 aaaaggagagagagggattcgaaccctcgatagttc 228

---

>dbj|AB234808.1| Chrysanthemum zawadskii chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population J02, partial
           sequence
          Length = 229

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 193 aaaaggagagagagggattcgaaccctcgatagttc 228

---

>dbj|AB234807.1| Chrysanthemum zawadskii chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population J01, partial
           sequence
          Length = 227

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 191 aaaaggagagagagggattcgaaccctcgatagttc 226

---

>dbj|AB234806.1| Chrysanthemum indicum chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population K23, partial
           sequence
          Length = 226

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 190 aaaaggagagagagggattcgaaccctcgatagttc 225

---

>dbj|AB234805.1| Chrysanthemum indicum chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population K22, partial
           sequence
          Length = 226

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 190 aaaaggagagagagggattcgaaccctcgatagttc 225

---

>dbj|AB234804.1| Chrysanthemum indicum chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population K21, partial
           sequence
          Length = 227

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 191 aaaaggagagagagggattcgaaccctcgatagttc 226

---

>dbj|AB234803.1| Chrysanthemum indicum chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population K20, partial
           sequence
          Length = 227

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 191 aaaaggagagagagggattcgaaccctcgatagttc 226

---

>dbj|AB234802.1| Chrysanthemum indicum chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population K19, partial
           sequence
          Length = 227

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 191 aaaaggagagagagggattcgaaccctcgatagttc 226

---

>dbj|AB234801.1| Chrysanthemum indicum chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population K18, partial
           sequence
          Length = 227

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 191 aaaaggagagagagggattcgaaccctcgatagttc 226

---

>dbj|AB234800.1| Chrysanthemum boreale chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population K17, partial
           sequence
          Length = 227

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 191 aaaaggagagagagggattcgaaccctcgatagttc 226

---

>dbj|AB234799.1| Chrysanthemum boreale chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population K16, partial
           sequence
          Length = 228

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 192 aaaaggagagagagggattcgaaccctcgatagttc 227

---

>dbj|AB234798.1| Chrysanthemum boreale chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population K15, partial
           sequence
          Length = 220

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 184 aaaaggagagagagggattcgaaccctcgatagttc 219

---

>dbj|AB234797.1| Chrysanthemum boreale chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population K14, partial
           sequence
          Length = 227

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 191 aaaaggagagagagggattcgaaccctcgatagttc 226

---

>dbj|AB234796.1| Chrysanthemum boreale chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population K13, partial
           sequence
          Length = 229

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 193 aaaaggagagagagggattcgaaccctcgatagttc 228

---

>dbj|AB234795.1| Chrysanthemum boreale chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population K12, partial
           sequence
          Length = 227

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 191 aaaaggagagagagggattcgaaccctcgatagttc 226

---

>dbj|AB234794.1| Chrysanthemum boreale chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population K11, partial
           sequence
          Length = 227

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 191 aaaaggagagagagggattcgaaccctcgatagttc 226

---

>dbj|AB234793.1| Chrysanthemum boreale chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population K10, partial
           sequence
          Length = 227

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 191 aaaaggagagagagggattcgaaccctcgatagttc 226

---

>dbj|AB234792.1| Chrysanthemum boreale chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population K09, partial
           sequence
          Length = 227

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 191 aaaaggagagagagggattcgaaccctcgatagttc 226

---

>dbj|AB234791.1| Chrysanthemum boreale chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population K08, partial
           sequence
          Length = 226

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 190 aaaaggagagagagggattcgaaccctcgatagttc 225

---

>dbj|AB234790.1| Chrysanthemum boreale chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population K07, partial
           sequence
          Length = 226

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 190 aaaaggagagagagggattcgaaccctcgatagttc 225

---

>dbj|AB234789.1| Chrysanthemum boreale chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population K06, partial
           sequence
          Length = 228

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 166 aaaaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||||
Sbjct: 192 aaaaggagagagagggattcgaaccctcgatagttc 227

---

>gb|AY337663.1| Asplundia sp. MWC-2003 isolate Sp_21 chloroplast trnS-ycf9
           intergenic spacer, complete sequence
          Length = 469

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                          
Query: 211 taccggttttcaagaccggagctatcaaccactcagctatctctcca 257
           ||||||||||||||||||| |||||||||| |||||| |||||||||
Sbjct: 1   taccggttttcaagaccggggctatcaaccgctcagccatctctcca 47

---

>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA
          Length = 121024

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 77/91 (84%)
 Strand = Plus / Plus

                                                                         
Query: 166   aaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttcaaga 225
             ||||||||||||||||||| |||||||||||| |    | ||||||| ||||||||||||
Sbjct: 41404 aaaaggagagagagggatttgaaccctcgataatcttaaaaactatatcggttttcaaga 41463

                                            
Query: 226   ccggagctatcaaccactcagctatctctcc 256
             |||  || || |||||||| || ||||||||
Sbjct: 41464 ccgacgccataaaccactcggccatctctcc 41494



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 174   agagagggattcgaaccctcgatag 198
             |||||||||||||||||||||||||
Sbjct: 48927 agagagggattcgaaccctcgatag 48903



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 170   ggagagagagggattcgaaccctcg 194
             |||||||||||||||||||||||||
Sbjct: 22978 ggagagagagggattcgaaccctcg 22954

---

>emb|X01647.1|CHMPTRN Marchantia polymorpha chloroplast DNA for tRNA-Ser(UGA),
            tRNA-Gly(GCC), tRNA-Met(CAU), ORF701, ORF702 and ORF703
          Length = 3381

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 77/91 (84%)
 Strand = Plus / Plus

                                                                        
Query: 166  aaaaggagagagagggattcgaaccctcgatagttcctagaactataccggttttcaaga 225
            ||||||||||||||||||| |||||||||||| |    | ||||||| ||||||||||||
Sbjct: 1626 aaaaggagagagagggatttgaaccctcgataatcttaaaaactatatcggttttcaaga 1685

                                           
Query: 226  ccggagctatcaaccactcagctatctctcc 256
            |||  || || |||||||| || ||||||||
Sbjct: 1686 ccgacgccataaaccactcggccatctctcc 1716

---

>gb|AY839888.1| Camellia sinensis cultivar Taiwan Sun Cha tRNA-Ser and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 221

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                             
Query: 207 actataccggttttcaagaccggagctatcaaccactcagctatctctcc 256
           |||||||||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct: 1   actataccggttttca-gaccggggctatcaaccactcagccatctctcc 49

---

>gb|AY839887.1| Camellia sinensis cultivar Chin Shin Dah Pan tRNA-Ser and
           trnS-trnfM intergenic spacer, partial sequence;
           chloroplast
          Length = 221

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                             
Query: 207 actataccggttttcaagaccggagctatcaaccactcagctatctctcc 256
           |||||||||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct: 1   actataccggttttca-gaccggggctatcaaccactcagccatctctcc 49

---

>gb|AY839886.1| Camellia tenuifolia cultivar Don San tRNA-Ser and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 221

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                             
Query: 207 actataccggttttcaagaccggagctatcaaccactcagctatctctcc 256
           |||||||||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct: 1   actataccggttttca-gaccggggctatcaaccactcagccatctctcc 49

---

>gb|AY839885.1| Camellia sinensis cultivar Shy Jin Chuen tRNA-Ser and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 221

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                             
Query: 207 actataccggttttcaagaccggagctatcaaccactcagctatctctcc 256
           |||||||||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct: 1   actataccggttttca-gaccggggctatcaaccactcagccatctctcc 49

---

>gb|AY839884.1| Camellia sinensis var. assamica cultivar Shan tRNA-Ser and
           trnS-trnfM intergenic spacer, partial sequence;
           chloroplast
          Length = 221

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                             
Query: 207 actataccggttttcaagaccggagctatcaaccactcagctatctctcc 256
           |||||||||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct: 1   actataccggttttca-gaccggggctatcaaccactcagccatctctcc 49

---

>gb|AY839883.1| Camellia sinensis var. assamica cultivar TTES No. 18 tRNA-Ser and
           trnS-trnfM intergenic spacer, partial sequence;
           chloroplast
          Length = 221

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                             
Query: 207 actataccggttttcaagaccggagctatcaaccactcagctatctctcc 256
           |||||||||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct: 1   actataccggttttca-gaccggggctatcaaccactcagccatctctcc 49

---

>gb|AY839882.1| Camellia sinensis cultivar Gau Lu tRNA-Ser and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 221

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                             
Query: 207 actataccggttttcaagaccggagctatcaaccactcagctatctctcc 256
           |||||||||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct: 1   actataccggttttca-gaccggggctatcaaccactcagccatctctcc 49

---

>gb|AY839881.1| Camellia sinensis cultivar Shiang Yuan tRNA-Ser and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 221

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                             
Query: 207 actataccggttttcaagaccggagctatcaaccactcagctatctctcc 256
           |||||||||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct: 1   actataccggttttca-gaccggggctatcaaccactcagccatctctcc 49

---

>gb|AY839880.1| Camellia sinensis cultivar Chin Shin Oolong tRNA-Ser and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 221

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                             
Query: 207 actataccggttttcaagaccggagctatcaaccactcagctatctctcc 256
           |||||||||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct: 1   actataccggttttca-gaccggggctatcaaccactcagccatctctcc 49

---

>gb|AY839879.1| Camellia sinensis var. assamica cultivar Burma tRNA-Ser and
           trnS-trnfM intergenic spacer, partial sequence;
           chloroplast
          Length = 221

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                             
Query: 207 actataccggttttcaagaccggagctatcaaccactcagctatctctcc 256
           |||||||||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct: 1   actataccggttttca-gaccggggctatcaaccactcagccatctctcc 49

---

>gb|AY839878.1| Camellia sinensis cultivar Bair Mau Hour tRNA-Ser and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 221

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                             
Query: 207 actataccggttttcaagaccggagctatcaaccactcagctatctctcc 256
           |||||||||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct: 1   actataccggttttca-gaccggggctatcaaccactcagccatctctcc 49

---

>gb|AY839877.1| Camellia sinensis cultivar Tiee Guan In tRNA-Ser and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 221

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                             
Query: 207 actataccggttttcaagaccggagctatcaaccactcagctatctctcc 256
           |||||||||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct: 1   actataccggttttca-gaccggggctatcaaccactcagccatctctcc 49

---

>gb|AY839876.1| Camellia sinensis cultivar TTES No. 12 tRNA-Ser and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 221

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                             
Query: 207 actataccggttttcaagaccggagctatcaaccactcagctatctctcc 256
           |||||||||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct: 1   actataccggttttca-gaccggggctatcaaccactcagccatctctcc 49

---

>gb|AY839875.1| Camellia furfuracea cultivar Chyh Ya Sun Cha tRNA-Ser and
           trnS-trnfM intergenic spacer, partial sequence;
           chloroplast
          Length = 221

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                             
Query: 207 actataccggttttcaagaccggagctatcaaccactcagctatctctcc 256
           |||||||||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct: 1   actataccggttttca-gaccggggctatcaaccactcagccatctctcc 49

---

>gb|AY839874.1| Camellia sinensis cultivar TTES No. 13 tRNA-Ser and trnS-trnfM
           intergenic spacer, partial sequence; chloroplast
          Length = 221

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 47/50 (94%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                             
Query: 207 actataccggttttcaagaccggagctatcaaccactcagctatctctcc 256
           |||||||||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct: 1   actataccggttttca-gaccggggctatcaaccactcagccatctctcc 49

---

>gb|AY363054.1| Spiranthes romanzoffiana trnS gene and trnS-trnfM intergenic
           spacer, partial sequence; chloroplast
          Length = 947

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Plus

                                                         
Query: 211 taccggttttcaagaccggagctatcaaccactcagctatctctcc 256
           ||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct: 1   taccggttttcaagaccggggctattaaccactcagccatctctcc 46

---

>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence
          Length = 3281944

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                             
Query: 213     ccggttttcaagaccggagctatcaaccactcagctatctctccac 258
               ||||||||||||||||| ||| ||||||||||||| ||||||||||
Sbjct: 1066192 ccggttttcaagaccggtgctttcaaccactcagccatctctccac 1066147



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                            
Query: 213     ccggttttcaagaccggagctatcaaccactcagctatctctcca 257
               ||||||||||||||||| ||| ||||||||||||| |||||||||
Sbjct: 3191806 ccggttttcaagaccggtgctttcaaccactcagccatctctcca 3191762



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 177     gagggattcgaaccctcgata 197
               |||||||||||||||||||||
Sbjct: 1570523 gagggattcgaaccctcgata 1570503



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 177     gagggattcgaaccctcgata 197
               |||||||||||||||||||||
Sbjct: 1570302 gagggattcgaaccctcgata 1570282

---

>gb|AF433647.1| Prunus salicina S5-RNase (s-rnase) gene, s-rnase-S5 allele, partial
            cds
          Length = 1553

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%), Gaps = 5/78 (6%)
 Strand = Plus / Minus

                                                                        
Query: 171  gagagagagggattcgaaccctcgatagttcctag-----aactataccggttttcaaga 225
            |||||||||||||| ||| |||||||||||| | |     |||||||| |||||||||||
Sbjct: 1175 gagagagagggatttgaaacctcgatagttctttgtttcgaactatactggttttcaaga 1116

                              
Query: 226  ccggagctatcaaccact 243
            ||| ||||||||||||||
Sbjct: 1115 ccgaagctatcaaccact 1098

---

>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence
          Length = 1877212

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                            
Query: 213    ccggttttcaagaccggagctatcaaccactcagctatctctccac 258
              ||||||||||||||||| ||| ||||||||||||| ||||||||||
Sbjct: 138376 ccggttttcaagaccggtgctttcaaccactcagccatctctccac 138331



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                          
Query: 213    ccggttttcaagaccggagctatcaaccactcagctatctctcc 256
              ||||||||||||||||| ||| ||||||||||||| ||||||||
Sbjct: 605053 ccggttttcaagaccggtgctttcaaccactcagccatctctcc 605096

---

>dbj|AB234816.1| Chrysanthemum arcticum chloroplast gene for psbC-trnS intergenic
           spacer, tRNA-Ser (UGA), isolate: population J10, partial
           sequence
          Length = 216

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 168 aaggagagagagggattcgaaccctcgatagttc 201
           ||||||||||||||||||||||||||||||||||
Sbjct: 182 aaggagagagagggattcgaaccctcgatagttc 215

---

>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence
          Length = 3354505

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                           
Query: 213   ccggttttcaagaccggagctatcaaccactcagctatctctccac 258
             ||||||||||||||||| ||| ||||||||||||| ||||||||||
Sbjct: 38075 ccggttttcaagaccggtgctttcaaccactcagccatctctccac 38030



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                            
Query: 213     ccggttttcaagaccggagctatcaaccactcagctatctctcca 257
               ||||||||||||||||| ||| ||||||||||||| |||||||||
Sbjct: 1179071 ccggttttcaagaccggtgctttcaaccactcagccatctctcca 1179115



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 177     gagggattcgaaccctcgata 197
               |||||||||||||||||||||
Sbjct: 2858054 gagggattcgaaccctcgata 2858074



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 177     gagggattcgaaccctcgata 197
               |||||||||||||||||||||
Sbjct: 2857833 gagggattcgaaccctcgata 2857853

---

>dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 1, complete sequence
          Length = 3288558

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Plus

                                                             
Query: 213     ccggttttcaagaccggagctatcaaccactcagctatctctccac 258
               ||||||||||||||||| ||| ||||||||||||| ||||||||||
Sbjct: 3193127 ccggttttcaagaccggtgctttcaaccactcagccatctctccac 3193172



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                           
Query: 213     ccggttttcaagaccggagctatcaaccactcagctatctctcc 256
               ||||||||||||||||| ||| ||||||||||||| ||||||||
Sbjct: 2239880 ccggttttcaagaccggtgctttcaaccactcagccatctctcc 2239837



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 177     gagggattcgaaccctcgata 197
               |||||||||||||||||||||
Sbjct: 2687989 gagggattcgaaccctcgata 2688009

---

>gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete sequence
          Length = 1844853

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                             
Query: 213     ccggttttcaagaccggagctatcaaccactcagctatctctccac 258
               ||||||||||||||||| ||| ||||||||||||| ||||||||||
Sbjct: 1584741 ccggttttcaagaccggtgctttcaaccactcagccatctctccac 1584696



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                           
Query: 213    ccggttttcaagaccggagctatcaaccactcagctatctctcca 257
              ||||||||||||||||| ||| ||||||||||||| |||||||||
Sbjct: 863890 ccggttttcaagaccggtgctttcaaccactcagccatctctcca 863846

---

>dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete genome
          Length = 138829

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 77/90 (85%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                         
Query: 169   aggagagagagggattcgaaccctcgatagt-tcctagaactataccggttttcaagacc 227
             ||||||||||||||||||||||||||||||| |     |||||| |||||||||||||||
Sbjct: 35114 aggagagagagggattcgaaccctcgatagtgttgattaactatgccggttttcaagacc 35055

                                           
Query: 228   ggagctatcaaccactcagctatctctcca 257
             | ||| || |||| ||| || |||||||||
Sbjct: 35054 gaagccataaaccgctcggccatctctcca 35025



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                        
Query: 168   aaggagagagagggattcgaaccctcg 194
             |||||||||||||||||||||||||||
Sbjct: 13581 aaggagagagagggattcgaaccctcg 13607



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 168   aaggagagagagggattcgaaccctcg 194
             ||||| |||||||||||||||||||||
Sbjct: 47398 aaggaaagagagggattcgaaccctcg 47372



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 170   ggagagagagggattcgaaccctcg 194
             ||||| |||||||||||||||||||
Sbjct: 13222 ggagaaagagggattcgaaccctcg 13198

---

>gb|AY337644.1| Pandanus eydouxia isolate Sp_2 chloroplast trnS-ycf9 intergenic
           spacer, complete sequence
          Length = 496

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 70/81 (86%), Gaps = 1/81 (1%)
 Strand = Plus / Plus

                                                                       
Query: 211 taccggttttcaagaccggagctatcaaccactcagctatctctccaccgcctaatcctt 270
           ||||||||||||||||||| |||||||||| |||||| |||||||||     ||||| ||
Sbjct: 1   taccggttttcaagaccggggctatcaacc-ctcagccatctctccaagaggtaatcttt 59

                                
Query: 271 attttactcctacaaatagaa 291
           ||||||| ||||| |||||||
Sbjct: 60  attttacccctacgaatagaa 80



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 492 aagaatcaatggattcatgattaaa 516
           |||||||||| ||||||||||||||
Sbjct: 259 aagaatcaattgattcatgattaaa 283

---

>emb|X60434.1|PUPSAE P.purpurea chloroplast DNA for tRNA-Ser and psaE genes
          Length = 570

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                            
Query: 165 caaaaggagagagagggattcgaaccctcgata 197
           |||||||||||||||||||||||||||||||||
Sbjct: 169 caaaaggagagagagggattcgaaccctcgata 137

---

>dbj|BA000038.2| Vibrio vulnificus YJ016 DNA, chromosome II, complete sequence
          Length = 1857073

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                            
Query: 213     ccggttttcaagaccggagctatcaaccactcagctatctctcca 257
               ||||||||||||||||| ||| ||||||||||||| |||||||||
Sbjct: 1400833 ccggttttcaagaccggtgctttcaaccactcagccatctctcca 1400789



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                            
Query: 213    ccggttttcaagaccggagctatcaaccactcagctatctctccac 258
              |||||||||||||||||  || ||||||||||||| ||||||||||
Sbjct: 311094 ccggttttcaagaccggttctttcaaccactcagccatctctccac 311049

---

>gb|U38804.1|PPU38804 Porphyra purpurea chloroplast, complete genome
          Length = 191028

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                               
Query: 165    caaaaggagagagagggattcgaaccctcgata 197
              |||||||||||||||||||||||||||||||||
Sbjct: 114059 caaaaggagagagagggattcgaaccctcgata 114091



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                        
Query: 169    aggagagagagggattcgaaccctcg 194
              ||||||||||||||||||||||||||
Sbjct: 116469 aggagagagagggattcgaaccctcg 116494



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 170    ggagagagagggattcgaaccctcg 194
              |||||||||||||||||||||||||
Sbjct: 126143 ggagagagagggattcgaaccctcg 126119

---

>gb|AE004278.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 186
            of 251 of the complete chromosome
          Length = 12211

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                        
Query: 213  ccggttttcaagaccggagctatcaaccactcagctatctctcc 256
            ||||||||||||||||| ||| ||||||||||||| ||||||||
Sbjct: 9145 ccggttttcaagaccggtgctttcaaccactcagccatctctcc 9102

---

>gb|AE004106.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 14
            of 251 of the complete chromosome
          Length = 13693

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                        
Query: 213  ccggttttcaagaccggagctatcaaccactcagctatctctcc 256
            ||||||||||||||||| ||| ||||||||||||| ||||||||
Sbjct: 5578 ccggttttcaagaccggtgctttcaaccactcagccatctctcc 5535

---

>gb|M20966.1|MPOCPTRSC Liverwort chloroplast Ser-tRNA-tga
          Length = 88

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 74/88 (84%)
 Strand = Plus / Minus

                                                                       
Query: 169 aggagagagagggattcgaaccctcgatagttcctagaactataccggttttcaagaccg 228
           |||||||||||||||| |||||||||||| |    | ||||||| |||||||||||||||
Sbjct: 88  aggagagagagggatttgaaccctcgataatcttaaaaactatatcggttttcaagaccg 29

                                       
Query: 229 gagctatcaaccactcagctatctctcc 256
             || || |||||||| || ||||||||
Sbjct: 28  acgccataaaccactcggccatctctcc 1

---

>dbj|AP006715.1| Porphyra yezoensis chloroplast DNA, complete genome
          Length = 191952

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                              
Query: 166    aaaaggagagagagggattcgaaccctcgata 197
              ||||||||||||||||||||||||||||||||
Sbjct: 114805 aaaaggagagagagggattcgaaccctcgata 114836



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                         
Query: 168    aaggagagagagggattcgaaccctcg 194
              |||||||||||||||||||||||||||
Sbjct: 117191 aaggagagagagggattcgaaccctcg 117217



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 170    ggagagagagggattcgaaccctcg 194
              |||||||||||||||||||||||||
Sbjct: 127463 ggagagagagggattcgaaccctcg 127439

---

>gb|AC126013.12| Medicago truncatula clone mth2-32e10, complete sequence
          Length = 116778

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 67/78 (85%), Gaps = 1/78 (1%)
 Strand = Plus / Plus

                                                                         
Query: 166   aaaaggagagagagggattcgaaccctcgatagttcctagaa-ctataccggttttcaag 224
             |||| ||||||| ||||||| ||||||| ||||||| |  || |||||| | ||||||||
Sbjct: 66196 aaaaagagagagggggattcaaaccctcaatagttctttcaaactatactgattttcaag 66255

                               
Query: 225   accggagctatcaaccac 242
             | ||||||||||||||||
Sbjct: 66256 atcggagctatcaaccac 66273

---

>gb|AC130811.22| Medicago truncatula clone mth2-26b4, complete sequence
          Length = 139970

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 67/78 (85%), Gaps = 1/78 (1%)
 Strand = Plus / Minus

                                                                          
Query: 166    aaaaggagagagagggattcgaaccctcgatagttcctagaa-ctataccggttttcaag 224
              |||| ||||||| ||||||| ||||||| ||||||| |  || |||||| | ||||||||
Sbjct: 116326 aaaaagagagagggggattcaaaccctcaatagttctttcaaactatactgattttcaag 116267

                                
Query: 225    accggagctatcaaccac 242
              | ||||||||||||||||
Sbjct: 116266 atcggagctatcaaccac 116249

---

>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome
          Length = 1842899

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                           
Query: 170    ggagagagagggattcgaaccctcgatag 198
              |||||||||||||||||||||||||||||
Sbjct: 296624 ggagagagagggattcgaaccctcgatag 296596



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 170     ggagagagagggattcgaaccctcga 195
               |||||| |||||||||||||||||||
Sbjct: 1048176 ggagagggagggattcgaaccctcga 1048201

---

>emb|CR378680.1| Photobacterium profundum SS9 chromosome 2; segment 6/7
          Length = 349751

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                           
Query: 213    ccggttttcaagaccggagctatcaaccactcagctatctctcca 257
              ||||||||||||||||| ||| || |||||||||| |||||||||
Sbjct: 226481 ccggttttcaagaccggtgctttcgaccactcagccatctctcca 226525



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                           
Query: 213    ccggttttcaagaccggagctatcaaccactcagctatctctcca 257
              ||||||||||||||||| ||| || |||||||||| |||||||||
Sbjct: 193510 ccggttttcaagaccggtgctttcgaccactcagccatctctcca 193554

---

>emb|CR378679.1| Photobacterium profundum SS9 chromosome 2; segment 5/7
          Length = 349464

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                           
Query: 213    ccggttttcaagaccggagctatcaaccactcagctatctctcca 257
              ||||||||||||||||| ||| || |||||||||| |||||||||
Sbjct: 336512 ccggttttcaagaccggtgctttcgaccactcagccatctctcca 336556



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                          
Query: 213    ccggttttcaagaccggagctatcaaccactcagctatctctcc 256
              ||||||||||||||||| ||| || |||||||||| ||||||||
Sbjct: 280059 ccggttttcaagaccggtgctttcgaccactcagccatctctcc 280016



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                          
Query: 213    ccggttttcaagaccggagctatcaaccactcagctatctctcc 256
              ||||||||||||||||| ||| || |||||||||| ||||||||
Sbjct: 129731 ccggttttcaagaccggtgctttcgaccactcagccatctctcc 129688

---

>emb|CR378677.1| Photobacterium profundum SS9 chromosome 2; segment 3/7
          Length = 348759

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                           
Query: 213    ccggttttcaagaccggagctatcaaccactcagctatctctcca 257
              ||||||||||||||||| ||| || |||||||||| |||||||||
Sbjct: 117822 ccggttttcaagaccggtgctttcgaccactcagccatctctcca 117866

---

>emb|CR378670.1| Photobacterium profundum SS9; segment 8/12
          Length = 348672

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                           
Query: 213    ccggttttcaagaccggagctatcaaccactcagctatctctcca 257
              ||||||||||||||||| ||| || |||||||||| |||||||||
Sbjct: 217080 ccggttttcaagaccggtgctttcgaccactcagccatctctcca 217124



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                          
Query: 213   ccggttttcaagaccggagctatcaaccactcagctatctctcca 257
             ||||||||||||||||| ||| || |||||||||| |||||||||
Sbjct: 75898 ccggttttcaagaccggtgctttcgaccactcagccatctctcca 75942

---

>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                            
Query: 170     ggagagagagggattcgaaccctcgatag 198
               |||||||||||||||||||||||||||||
Sbjct: 1711200 ggagagagagggattcgaaccctcgatag 1711172



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                            
Query: 170     ggagagagagggattcgaaccctcgatag 198
               |||||| ||||||||||||||||||||||
Sbjct: 2794022 ggagagggagggattcgaaccctcgatag 2794050

---

>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome
          Length = 1709204

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                          
Query: 170    ggagagagagggattcgaaccctcgata 197
              ||||||||||||||||||||||||||||
Sbjct: 833337 ggagagagagggattcgaaccctcgata 833310



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 170     ggagagagagggattcgaaccctcga 195
               |||||| |||||||||||||||||||
Sbjct: 1520738 ggagagggagggattcgaaccctcga 1520763

---

>gb|AY178864.1| Adiantum capillus-veneris chloroplast, complete genome
          Length = 150568

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                         
Query: 169   aggagagagagggattcgaaccctcgat 196
             ||||||||||||||||||||||||||||
Sbjct: 31067 aggagagagagggattcgaaccctcgat 31040



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                     
Query: 170  ggagagagagggattcgaaccctcg 194
            |||||||||||||||||||||||||
Sbjct: 7204 ggagagagagggattcgaaccctcg 7228

---

>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                           
Query: 170     ggagagagagggattcgaaccctcgata 197
               ||||||||||||||||||||||||||||
Sbjct: 3959470 ggagagagagggattcgaaccctcgata 3959497



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                        
Query: 170     ggagagagagggattcgaaccctcg 194
               |||||||||||||||||||||||||
Sbjct: 3841040 ggagagagagggattcgaaccctcg 3841064

---

>gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence
          Length = 1207381

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                           
Query: 170     ggagagagagggattcgaaccctcgata 197
               ||||||||||||||||||||||||||||
Sbjct: 1055095 ggagagagagggattcgaaccctcgata 1055068

---

>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
              genome
          Length = 3397754

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                          
Query: 170    ggagagagagggattcgaaccctcgata 197
              ||||||||||||||||||||||||||||
Sbjct: 955304 ggagagagagggattcgaaccctcgata 955331



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                          
Query: 170     ggagagagagggattcgaaccctcgat 196
               |||||||||||||||||||||||||||
Sbjct: 1766841 ggagagagagggattcgaaccctcgat 1766815

---

>gb|AE017197.1| Rickettsia typhi str. Wilmington complete genome
          Length = 1111496

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                          
Query: 170    ggagagagagggattcgaaccctcgata 197
              ||||||||||||||||||||||||||||
Sbjct: 919476 ggagagagagggattcgaaccctcgata 919449

---

>gb|AE008662.1| Rickettsia conorii str. Malish 7, section 94 of 114 of the complete
            genome
          Length = 10671

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                        
Query: 170  ggagagagagggattcgaaccctcgata 197
            ||||||||||||||||||||||||||||
Sbjct: 3328 ggagagagagggattcgaaccctcgata 3301

---

>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                         
Query: 170   ggagagagagggattcgaaccctcgata 197
             ||||||||||||||||||||||||||||
Sbjct: 48875 ggagagagagggattcgaaccctcgata 48848



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 170    ggagagagagggattcgaaccctcg 194
              |||||||||||||||||||||||||
Sbjct: 106507 ggagagagagggattcgaaccctcg 106483

---

>gb|AY337662.1| Carludovica palmata isolate Sp_20 chloroplast trnS-ycf9 intergenic
           spacer, complete sequence
          Length = 473

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 218 tttcaagaccggagctatcaaccactcagctatctctcca 257
           |||||||||||| |||||||||| |||||| |||||||||
Sbjct: 8   tttcaagaccggggctatcaaccgctcagccatctctcca 47

---

>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome
          Length = 1485148

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                          
Query: 170    ggagagagagggattcgaaccctcgata 197
              ||||||||||||||||||||||||||||
Sbjct: 188197 ggagagagagggattcgaaccctcgata 188224

---

>gb|CP000107.1| Ehrlichia canis str. Jake, complete genome
          Length = 1315030

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                          
Query: 170    ggagagagagggattcgaaccctcgata 197
              ||||||||||||||||||||||||||||
Sbjct: 571161 ggagagagagggattcgaaccctcgata 571134



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                       
Query: 174     agagagggattcgaaccctcgata 197
               ||||||||||||||||||||||||
Sbjct: 1233813 agagagggattcgaaccctcgata 1233790

---

>gb|DQ366739.1| Uncultured Prochlorococcus marinus clone HOT0M-7B6 genomic sequence
          Length = 11735

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                         
Query: 170   ggagagagagggattcgaaccctcgata 197
             ||||||||||||||||||||||||||||
Sbjct: 10771 ggagagagagggattcgaaccctcgata 10744

---

>gb|CP000087.1| Rickettsia bellii RML369-C, complete genome
          Length = 1522076

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                          
Query: 170    ggagagagagggattcgaaccctcgata 197
              ||||||||||||||||||||||||||||
Sbjct: 748372 ggagagagagggattcgaaccctcgata 748399

---

>emb|CR628337.1| Legionella pneumophila str. Lens complete genome
          Length = 3345687

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                           
Query: 170     ggagagagagggattcgaaccctcgata 197
               ||||||||||||||||||||||||||||
Sbjct: 1025476 ggagagagagggattcgaaccctcgata 1025503



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                          
Query: 170     ggagagagagggattcgaaccctcgat 196
               |||||||||||||||||||||||||||
Sbjct: 1593204 ggagagagagggattcgaaccctcgat 1593230

---

>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                           
Query: 170     ggagagagagggattcgaaccctcgata 197
               ||||||||||||||||||||||||||||
Sbjct: 1047962 ggagagagagggattcgaaccctcgata 1047989



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                          
Query: 170     ggagagagagggattcgaaccctcgat 196
               |||||||||||||||||||||||||||
Sbjct: 1732757 ggagagagagggattcgaaccctcgat 1732731

---

>emb|CR378668.1| Photobacterium profundum SS9; segment 6/12
          Length = 348128

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                          
Query: 213    ccggttttcaagaccggagctatcaaccactcagctatctctcc 256
              ||||||||||||||||| ||| || |||||||||| ||||||||
Sbjct: 182366 ccggttttcaagaccggtgctttcgaccactcagccatctctcc 182409

---

>emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome
          Length = 1581384

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                          
Query: 170    ggagagagagggattcgaaccctcgata 197
              ||||||||||||||||||||||||||||
Sbjct: 176482 ggagagagagggattcgaaccctcgata 176455



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 170    ggagagagagggattcgaaccctcgatag 198
              ||||||||||||||| |||||| ||||||
Sbjct: 170858 ggagagagagggatttgaacccccgatag 170886



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 235    tcaaccactcagctatctctccac 258
              ||||||||||||| ||||||||||
Sbjct: 170922 tcaaccactcagccatctctccac 170945

---

>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome
          Length = 1931047

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                          
Query: 170    ggagagagagggattcgaaccctcgata 197
              ||||||||||||||||||||||||||||
Sbjct: 189754 ggagagagagggattcgaaccctcgata 189727



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 170    ggagagagagggattcgaaccctcgatag 198
              ||||||||||||||| |||||| ||||||
Sbjct: 184168 ggagagagagggatttgaacccccgatag 184196

---

>emb|BX572608.1| Rhodopseudomonas palustris CGA009 complete genome; segment 16/16
          Length = 227214

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                         
Query: 170   ggagagagagggattcgaaccctcgata 197
             ||||||||||||||||||||||||||||
Sbjct: 20335 ggagagagagggattcgaaccctcgata 20362

---

>emb|BX572092.1| Prochlorococcus marinus MED4 complete genome; segment 3/5
          Length = 348178

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                          
Query: 170    ggagagagagggattcgaaccctcgata 197
              ||||||||||||||||||||||||||||
Sbjct: 162421 ggagagagagggattcgaaccctcgata 162448

---

>emb|BX321863.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 8/10
          Length = 286850

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                          
Query: 170    ggagagagagggattcgaaccctcgata 197
              ||||||||||||||||||||||||||||
Sbjct: 181272 ggagagagagggattcgaaccctcgata 181299

---

>emb|AJ235273.1|RPXX04 Rickettsia prowazekii strain Madrid E, complete genome; segment 4/4
          Length = 237523

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                         
Query: 170   ggagagagagggattcgaaccctcgata 197
             ||||||||||||||||||||||||||||
Sbjct: 49480 ggagagagagggattcgaaccctcgata 49453

---

>gb|AF454951.1|AF454951 Brucella melitensis biovar Abortus flanking genomic sequence and
             transposon Tn1953, complete sequence
          Length = 50361

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                         
Query: 170   ggagagagagggattcgaaccctcgata 197
             ||||||||||||||||||||||||||||
Sbjct: 49941 ggagagagagggattcgaaccctcgata 49968

---

>gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome
          Length = 1176248

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                          
Query: 170    ggagagagagggattcgaaccctcgata 197
              ||||||||||||||||||||||||||||
Sbjct: 671613 ggagagagagggattcgaaccctcgata 671640



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                       
Query: 174     agagagggattcgaaccctcgata 197
               ||||||||||||||||||||||||
Sbjct: 1120238 agagagggattcgaaccctcgata 1120215

---

>gb|CP000235.1| Anaplasma phagocytophilum HZ, complete genome
          Length = 1471282

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                          
Query: 170    ggagagagagggattcgaaccctcgata 197
              ||||||||||||||||||||||||||||
Sbjct: 646440 ggagagagagggattcgaaccctcgata 646413

---

>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                           
Query: 170     ggagagagagggattcgaaccctcgata 197
               ||||||||||||||||||||||||||||
Sbjct: 1147527 ggagagagagggattcgaaccctcgata 1147554



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                            
Query: 170     ggagagagagggattcgaaccctcgatag 198
               |||||| ||||||||||||||||||||||
Sbjct: 1869405 ggagagggagggattcgaaccctcgatag 1869433

---

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 38/40 (95%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                        
Query: 9        ccctcttaactaagnattttcttatttatacctgttctac 48
                |||||||||| ||| |||||||||||||||||||||||||
Sbjct: 24110422 ccctcttaacaaag-attttcttatttatacctgttctac 24110384

---

>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                           
Query: 170     ggagagagagggattcgaaccctcgata 197
               ||||||||||||||||||||||||||||
Sbjct: 1752462 ggagagagagggattcgaaccctcgata 1752435



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                         
Query: 170    ggagagagagggattcgaaccctcgat 196
              |||||||||||||||||||||||||||
Sbjct: 397794 ggagagagagggattcgaaccctcgat 397768



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 170    ggagagagagggattcgaaccctcg 194
              |||||| ||||||||||||||||||
Sbjct: 279351 ggagagggagggattcgaaccctcg 279375



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 213    ccggttttcaagaccggagctatcaaccactc 244
              ||||||||||||||||| ||  ||||||||||
Sbjct: 760821 ccggttttcaagaccggtgccttcaaccactc 760790

---

>gb|AE009662.1| Brucella melitensis 16M chromosome II, section 24 of 107 of the
            complete sequence
          Length = 10345

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                        
Query: 170  ggagagagagggattcgaaccctcgata 197
            ||||||||||||||||||||||||||||
Sbjct: 1522 ggagagagagggattcgaaccctcgata 1549

---

>gb|AF028594.1|AF028594 Pseudomonas pseudoalcaligenes hydroxylaminobenzene mutase (habA) and
            (habB) genes, and Tn5501 resolvase (tnpR) gene, complete
            cds; and Tn5501 transposase (tnpA) gene, partial cds
          Length = 8134

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                        
Query: 170  ggagagagagggattcgaaccctcgata 197
            ||||||||||||||||||||||||||||
Sbjct: 4876 ggagagagagggattcgaaccctcgata 4903

---

>gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence
          Length = 1162204

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                           
Query: 170     ggagagagagggattcgaaccctcgata 197
               ||||||||||||||||||||||||||||
Sbjct: 1010505 ggagagagagggattcgaaccctcgata 1010478

---

>dbj|AP003846.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1710_H11
          Length = 136107

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 38/40 (95%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                     
Query: 9     ccctcttaactaagnattttcttatttatacctgttctac 48
             |||||||||| ||| |||||||||||||||||||||||||
Sbjct: 43837 ccctcttaacaaag-attttcttatttatacctgttctac 43799

---

>emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II, complete sequence, strain
               2308
          Length = 1156948

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                           
Query: 170     ggagagagagggattcgaaccctcgata 197
               ||||||||||||||||||||||||||||
Sbjct: 1005261 ggagagagagggattcgaaccctcgata 1005234

---

>gb|CP000030.1| Anaplasma marginale str. St. Maries, complete genome
          Length = 1197687

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                          
Query: 170    ggagagagagggattcgaaccctcgata 197
              ||||||||||||||||||||||||||||
Sbjct: 516856 ggagagagagggattcgaaccctcgata 516829

---

>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                           
Query: 170     ggagagagagggattcgaaccctcgata 197
               ||||||||||||||||||||||||||||
Sbjct: 2232987 ggagagagagggattcgaaccctcgata 2233014



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                        
Query: 170     ggagagagagggattcgaaccctcg 194
               |||||||||||||||||||||||||
Sbjct: 1082398 ggagagagagggattcgaaccctcg 1082422

---

>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                          
Query: 170     ggagagagagggattcgaaccctcgat 196
               |||||||||||||||||||||||||||
Sbjct: 1025761 ggagagagagggattcgaaccctcgat 1025735



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                           
Query: 170     ggagagagagggattcgaaccctcgata 197
               |||||| |||||||||||||||||||||
Sbjct: 2947231 ggagagggagggattcgaaccctcgata 2947204

---

>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                         
Query: 170    ggagagagagggattcgaaccctcgat 196
              |||||||||||||||||||||||||||
Sbjct: 705507 ggagagagagggattcgaaccctcgat 705481

---

>gb|AE016828.2| Coxiella burnetii RSA 493, complete genome
          Length = 1995281

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                         
Query: 170    ggagagagagggattcgaaccctcgat 196
              |||||||||||||||||||||||||||
Sbjct: 992821 ggagagagagggattcgaaccctcgat 992847



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 170     ggagagagagggattcgaaccctcg 194
               |||||| ||||||||||||||||||
Sbjct: 1128216 ggagagggagggattcgaaccctcg 1128240



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 170    ggagagagagggattcgaaccctcg 194
              |||||| ||||||||||||||||||
Sbjct: 604668 ggagagggagggattcgaaccctcg 604692

---

>gb|DQ291132.1| Oltmannsiellopsis viridis chloroplast, complete genome
          Length = 151933

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                        
Query: 171   gagagagagggattcgaaccctcgata 197
             |||||||||||||||||||||||||||
Sbjct: 56633 gagagagagggattcgaaccctcgata 56659



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 170   ggagagagagggattcgaaccctcg 194
             |||||||||||||||||||||||||
Sbjct: 57014 ggagagagagggattcgaaccctcg 57038

---

>gb|AF180559.1|AF180559 Viscum cruciatum chloroplast trnS(UGA)-trnfM(CAU) intergenic spacer
           region, partial sequence
          Length = 307

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 224 gaccggagctatcaaccactcagctatctctccac 258
           ||||||||||||||||||||| || ||||||||||
Sbjct: 1   gaccggagctatcaaccactcggccatctctccac 35


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,891,116
Number of Sequences: 3902068
Number of extensions: 5891116
Number of successful extensions: 154286
Number of sequences better than 10.0: 742
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 148124
Number of HSP's gapped (non-prelim): 6087
length of query: 523
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 500
effective length of database: 17,143,297,704
effective search space: 8571648852000
effective search space used: 8571648852000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---