ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2a13 |
|---|---|
| Clone Library Name | barley_pub |
>POF13_SCHPO (O94334) F-box protein pof13| Length = 396 Score = 32.0 bits (71), Expect = 0.61 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = -3 Query: 330 TLTPVIFGSYLVFRVCLDLVPLAQPAPKQCFTPRCPVNCC 211 TLT ++F+ LD +P P +C RCP+N C Sbjct: 223 TLTSNWHSRVILFQNALDALPTTHGNPVECDISRCPLNAC 262
>YPAH_PSELE (P52089) UPF0178 protein in pahZ1 5'region| Length = 154 Score = 30.8 bits (68), Expect = 1.4 Identities = 15/43 (34%), Positives = 25/43 (58%) Frame = +2 Query: 143 VVVRGEMPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGCASG 271 V+ +G +PL PR W++ + AQQLT ++ G+G +G Sbjct: 82 VLEKGGLPLNPRGEWYTKDTI-AQQLTMRAFMEELRGSGVDTG 123
>TIM44_YEAST (Q01852) Import inner membrane translocase subunit TIM44,| mitochondrial precursor (Mitochondrial protein import protein 1) (Inner membrane import site protein 45) (ISP45) (Membrane import machinery protein MIM44) Length = 431 Score = 29.3 bits (64), Expect = 3.9 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +2 Query: 266 SGTKSRQTLNTRYDPKITGVKVGQXXXXXXASSSRGKQPGSP 391 SGT SR TL RY + TG+ V + + ++G P SP Sbjct: 10 SGTSSR-TLTARYRSQYTGLLVARVLFSTSTTRAQGGNPRSP 50
>CN12L_DROME (Q9VTL1) CSN12-like protein| Length = 395 Score = 29.3 bits (64), Expect = 3.9 Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 2/25 (8%) Frame = -3 Query: 300 LVFRVCLDLVPLAQPAPKQC--FTP 232 L++RVCLDL LAQ K C FTP Sbjct: 108 LMYRVCLDLRYLAQACEKHCQGFTP 132
>GSH1_PSESM (Q88AR1) Glutamate--cysteine ligase (EC 6.3.2.2)| (Gamma-glutamylcysteine synthetase) (Gamma-ECS) (GCS) Length = 529 Score = 28.9 bits (63), Expect = 5.1 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = +1 Query: 16 SLNRAIVTAYGPEPG*SIHDQDEAWMKLSRGPNRLMLKNQRMS 144 SL +A+ T Y P HDQ+ W++L+ N L ++N+ S Sbjct: 263 SLRKAVATPYKPYVDIGTHDQNGEWVQLN--TNVLQIENEYYS 303
>Y172_ADE02 (P03285) Hypothetical protein D-172| Length = 172 Score = 28.5 bits (62), Expect = 6.7 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 8/77 (10%) Frame = +2 Query: 182 SWFSPKCVEAQQLTGHLGVKHCFGAGCASGTKSRQTLNTRYD--------PKITGVKVGQ 337 +W P + A L GH G C G G +S+ ++ + +I G +G+ Sbjct: 83 AWRRPPTLTATGLMGHSGTTGCISGGVLEGPESQLSVLLLHSLDTGDVGRLRIAGTNLGR 142 Query: 338 XXXXXXASSSRGKQPGS 388 + S G GS Sbjct: 143 RVGLAGSGSGSGSGSGS 159
>DOK1_HUMAN (Q99704) Docking protein 1 (Downstream of tyrosine kinase 1)| (p62(dok)) (pp62) Length = 481 Score = 28.5 bits (62), Expect = 6.7 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = -2 Query: 280 RFGTARAARTETVLYP*MSSQLLRLNAFRGEPASSG 173 RFGT R +T VLYP + RL F + +SSG Sbjct: 16 RFGTKRWRKTWAVLYPASPHGVARLEFFDHKGSSSG 51
>GSH1_PSESY (P61379) Glutamate--cysteine ligase (EC 6.3.2.2)| (Gamma-glutamylcysteine synthetase) (Gamma-ECS) (GCS) Length = 535 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = +1 Query: 16 SLNRAIVTAYGPEPG*SIHDQDEAWMKLSRGPNRLMLKNQRMS 144 SL +A+ T Y P HDQ+ W++L+ N L ++N+ S Sbjct: 269 SLRKAVATPYKPYVEVGTHDQNGEWVQLN--TNVLQIENEYYS 309
>CCHL_NEUCR (P14187) Cytochrome c heme lyase (EC 4.4.1.17) (CCHL)| (Holocytochrome-C synthase) Length = 346 Score = 28.5 bits (62), Expect = 6.7 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 1/85 (1%) Frame = -3 Query: 276 LVPLAQPAPKQCFTPRCPVNCCASTHFGENQLALGSSGISPLTTTHPLILQHQSVRTSA* 97 + P +P P +CPVN H ++ LA ++ ++P P HQ S Sbjct: 51 VTPAPEPTPAAAAPSKCPVN-----HGAKDTLAAAAAAVAP---KQPQPENHQPAAAS-- 100 Query: 96 FHPSFILVMD-RSPRFGSISSDNRP 25 PSF ++ + F SIS + P Sbjct: 101 -EPSFFSKLNPLNYMFSSISQEPAP 124
>DOK1_BOVIN (Q5EA84) Docking protein 1 (Downstream of tyrosine kinase 1)| Length = 483 Score = 28.5 bits (62), Expect = 6.7 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = -2 Query: 280 RFGTARAARTETVLYP*MSSQLLRLNAFRGEPASSG 173 RFGT R +T VLYP + RL F + +SSG Sbjct: 16 RFGTKRWRKTWAVLYPASPHGVARLEFFDHKGSSSG 51
>TSH1_HUMAN (Q6ZSZ6) Teashirt homolog 1 (Serologically defined colon cancer| antigen 3) (Antigen NY-CO-33) Length = 1077 Score = 28.1 bits (61), Expect = 8.8 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 9/75 (12%) Frame = +2 Query: 197 KCVEA-------QQLTGHLGVK-HCFGAGCASGTKSRQ-TLNTRYDPKITGVKVGQXXXX 349 KC+E QQLT H+ V H ++ K +Q L+ + KI + + Sbjct: 417 KCMECGSSHDTLQQLTAHMMVTGHFLKVTTSASKKGKQLVLDPVVEEKIQSIPLPPTTHT 476 Query: 350 XXASSSRGKQPGSPA 394 +SS KQP SPA Sbjct: 477 RLPASSIKKQPDSPA 491
>TSH1_MOUSE (Q5DTH5) Teashirt homolog 1 (Serologically defined colon cancer| antigen 3 homolog) Length = 1084 Score = 28.1 bits (61), Expect = 8.8 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 9/75 (12%) Frame = +2 Query: 197 KCVEA-------QQLTGHLGVK-HCFGAGCASGTKSRQ-TLNTRYDPKITGVKVGQXXXX 349 KC+E QQLT H+ V H ++ K +Q L+ + KI + + Sbjct: 417 KCMECGSSHDTLQQLTAHMMVTGHFLKVTTSASKKGKQLVLDPVVEEKIQSIPLPPTTHT 476 Query: 350 XXASSSRGKQPGSPA 394 +SS KQP SPA Sbjct: 477 RLPASSIKKQPDSPA 491 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,555,288 Number of Sequences: 219361 Number of extensions: 1274601 Number of successful extensions: 3066 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2977 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3066 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
