ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PAC2_YEAST (P39937) Protein PAC2 33 0.87
2Y256_MYCGE (P47498) Hypothetical protein MG256 31 2.5
3O1078_RAT (P23265) Olfactory receptor 1078 (Olfactory receptor-l... 30 4.3

>PAC2_YEAST (P39937) Protein PAC2|
          Length = 518

 Score = 32.7 bits (73), Expect = 0.87
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
 Frame = +1

Query: 172 LVLTHWTGLTGQCH-VSR*KEWQNLKISQNIEHTMWTNMEIFHHIWSNRLRDSSKFQFLQ 348
           L L  +T +   C  +   K  ++L ISQN   + W N++ +       LR SS     +
Sbjct: 159 LSLNLFTNINSLCEFIEPLKNLESLNISQNKLLSGWDNLKEYDLSHIKTLRLSSCGLSYK 218

Query: 349 FWGKKLGNFVFRKF*KLHITLSIACSTNIENFQHILPC 462
             GK L +F  R    L ++ +   S  I+NF++ +PC
Sbjct: 219 HIGKLLKSF--RTLKMLDLSYNNLTSAGIQNFENEIPC 254



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>Y256_MYCGE (P47498) Hypothetical protein MG256|
          Length = 256

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 479 QNFNFYNFDPNFTEQEAWHVD*PCDNFQHIGRNRLSYSSKI 601
           +N NF NF    ++++   V  P  NFQ +  NRL Y SK+
Sbjct: 180 KNRNFVNFFETISKEKTGVVQKPVLNFQRLYVNRLYYQSKL 220



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>O1078_RAT (P23265) Olfactory receptor 1078 (Olfactory receptor-like protein|
           F3)
          Length = 333

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 574 PPNMLKIVTGLVHMPCFLFC 515
           PP++L     L H+PCF+FC
Sbjct: 313 PPSLLHFFLVLCHLPCFIFC 332


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,871,394
Number of Sequences: 219361
Number of extensions: 1956789
Number of successful extensions: 4923
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4912
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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