ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2a06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PAC2_YEAST (P39937) Protein PAC2 33 0.94
2MAM1_SCHPO (P78966) Mating factor M secretion protein mam1 (Mult... 31 2.7

>PAC2_YEAST (P39937) Protein PAC2|
          Length = 518

 Score = 32.7 bits (73), Expect = 0.94
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
 Frame = +1

Query: 172 LVLTHWTGLTGQCH-VSR*KEWQNLKISQNIEHTMWTNMEIFHHIWSNRLRDSSKFQFLQ 348
           L L  +T +   C  +   K  ++L ISQN   + W N++ +       LR SS     +
Sbjct: 159 LSLNLFTNINSLCEFIEPLKNLESLNISQNKLLSGWDNLKEYDLSHIKTLRLSSCGLSYK 218

Query: 349 FWGKKLGNFVFRKF*KLHITLSIACSTNIENFQHILPC 462
             GK L +F  R    L ++ +   S  I+NF++ +PC
Sbjct: 219 HIGKLLKSF--RTLKMLDLSYNNLTSAGIQNFENEIPC 254



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>MAM1_SCHPO (P78966) Mating factor M secretion protein mam1 (Multiple drug|
           resistance protein homolog) (P-glycoprotein)
          Length = 1336

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +3

Query: 321 RFIKISISAILGKKIGQFCFQKILKIAHNIKHSMFY*YRKFSTYLAMQTERFIKISISTI 500
           RF+   +SAI GK+    CF  +     + K S FY   +  + L    +R I+    +I
Sbjct: 171 RFLWQYLSAIAGKRARSLCFHVL-----SSKSSTFYSLTESKSGLVNSVDRCIQFYEKSI 225

Query: 501 -LTQFHRTGSMACGLTC 548
            L  FH   ++A  L+C
Sbjct: 226 SLPMFHIAENLAISLSC 242


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,998,909
Number of Sequences: 219361
Number of extensions: 2071433
Number of successful extensions: 5169
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5157
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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