ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2a06 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL021175.1|CEY6E2A Caenorhabditis elegans YAC Y6E2A, complete sequence Length = 22377 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 480 aaaatttcaatttctacaattt 501 |||||||||||||||||||||| Sbjct: 18511 aaaatttcaatttctacaattt 18532
>gb|AC098736.4| Mus musculus BAC clone RP23-122B3 from 1, complete sequence Length = 211208 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 390 ctgaaaattgcacataacatta 411 |||||||||||||||||||||| Sbjct: 200568 ctgaaaattgcacataacatta 200589
>emb|AL110490.1|CEY48B6A Caenorhabditis elegans YAC Y48B6A, complete sequence Length = 101295 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 330 aaaatttcaatttctgcaattt 351 |||||||||||||||||||||| Sbjct: 83216 aaaatttcaatttctgcaattt 83237
>ref|XM_640675.1| Dictyostelium discoideum hypothetical protein (DDB0202739), partial mRNA Length = 2679 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 473 attcatcaaaatttcaatttc 493 ||||||||||||||||||||| Sbjct: 2488 attcatcaaaatttcaatttc 2508 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 attcatcaaaatttcaatttc 343 ||||||||||||||||||||| Sbjct: 2488 attcatcaaaatttcaatttc 2508
>ref|NM_195674.1| Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0004A10.9), mRNA Length = 663 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 234 gcaaaatctgaaaatttcaca 254 ||||||||||||||||||||| Sbjct: 50 gcaaaatctgaaaatttcaca 30
>gb|U50199.1| Caenorhabditis elegans cosmid T14F9, complete sequence Length = 36679 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 595 aaattcaatttctgcaatttt 615 ||||||||||||||||||||| Sbjct: 15680 aaattcaatttctgcaatttt 15660 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 ttcaatttctgcaattttgg 354 |||||||||||||||||||| Sbjct: 15677 ttcaatttctgcaattttgg 15658
>ref|XM_457040.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0B01694g) partial mRNA Length = 1737 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 587 ttcatcaaaaattcaatttct 607 ||||||||||||||||||||| Sbjct: 1706 ttcatcaaaaattcaatttct 1686
>gb|AC122246.5| Mus musculus BAC clone RP23-152K13 from 1, complete sequence Length = 203739 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 379 ttcagaaaattctgaaaattgcaca 403 |||| |||||||||||||||||||| Sbjct: 109786 ttcacaaaattctgaaaattgcaca 109762
>gb|AC146789.30| Medicago truncatula clone mth2-71h24, complete sequence Length = 127922 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 230 aatggcaaaatctgaaaattt 250 ||||||||||||||||||||| Sbjct: 49816 aatggcaaaatctgaaaattt 49836 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 230 aatggcaaaatctgaaaattt 250 ||||||||||||||||||||| Sbjct: 32391 aatggcaaaatctgaaaattt 32411
>gb|AC147007.17| Medicago truncatula clone mth2-26c3, complete sequence Length = 122770 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 attcatcaaaatttcaatttc 343 ||||||||||||||||||||| Sbjct: 107248 attcatcaaaatttcaatttc 107268 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 473 attcatcaaaatttcaatttc 493 ||||||||||||||||||||| Sbjct: 107248 attcatcaaaatttcaatttc 107268
>emb|CR450692.5| Zebrafish DNA sequence from clone CH211-198J13 in linkage group 2, complete sequence Length = 180976 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 577 gattgagctattcatcaaaaa 597 ||||||||||||||||||||| Sbjct: 75127 gattgagctattcatcaaaaa 75107
>gb|AC024798.1| Caenorhabditis elegans cosmid Y48G9A, complete sequence Length = 120548 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 474 ttcatcaaaatttcaatttctacaatttt 502 |||| ||||| |||||||||||||||||| Sbjct: 36891 ttcagcaaaacttcaatttctacaatttt 36863
>emb|AL159978.14| Human DNA sequence from clone RP11-496O3 on chromosome 13 Contains the 3' end of the WASF3 gene for WAS protein family, member 3 (WASP family Verprolin-homologous protein 3 (SCAR3, Scar3, WAVE3, KIAA0900)), the GPR12 gene for G protein-coupled receptor 12 (GPCR21) and two CpG islands, complete sequence Length = 206442 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 332 aatttcaatttctgcaatttt 352 ||||||||||||||||||||| Sbjct: 49299 aatttcaatttctgcaatttt 49279
>emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS767 of Debaryomyces hansenii Length = 1349926 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 587 ttcatcaaaaattcaatttct 607 ||||||||||||||||||||| Sbjct: 132753 ttcatcaaaaattcaatttct 132773
>gb|AC139854.21| Medicago truncatula clone mth2-16e16, complete sequence Length = 117864 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 473 attcatcaaaatttcaatttc 493 ||||||||||||||||||||| Sbjct: 9331 attcatcaaaatttcaatttc 9351 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 attcatcaaaatttcaatttc 343 ||||||||||||||||||||| Sbjct: 9331 attcatcaaaatttcaatttc 9351
>gb|AC098682.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0004A10, from chromosome 10, complete sequence Length = 144271 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 234 gcaaaatctgaaaatttcaca 254 ||||||||||||||||||||| Sbjct: 64308 gcaaaatctgaaaatttcaca 64288
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 611 atttttgaccaggaaaagttc 631 ||||||||||||||||||||| Sbjct: 1230886 atttttgaccaggaaaagttc 1230866
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 330 aaaatttcaatttctgcaatt 350 ||||||||||||||||||||| Sbjct: 4247196 aaaatttcaatttctgcaatt 4247216
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 gcaaaatctgaaaatttcaca 254 ||||||||||||||||||||| Sbjct: 8366938 gcaaaatctgaaaatttcaca 8366958
>emb|CR388141.9| Zebrafish DNA sequence from clone DKEY-28J8 in linkage group 14, complete sequence Length = 224582 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 289 atttttcaccatatttggtcgaata 313 ||||||||| ||||||||||||||| Sbjct: 153741 atttttcacaatatttggtcgaata 153717
>emb|CR847890.19| Zebrafish DNA sequence from clone DKEYP-70H9 in linkage group 14, complete sequence Length = 217550 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 289 atttttcaccatatttggtcgaata 313 ||||||||| ||||||||||||||| Sbjct: 58547 atttttcacaatatttggtcgaata 58571
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 330 aaaatttcaatttctgcaatt 350 ||||||||||||||||||||| Sbjct: 4190930 aaaatttcaatttctgcaatt 4190950
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 gcaaaatctgaaaatttcaca 254 ||||||||||||||||||||| Sbjct: 8372037 gcaaaatctgaaaatttcaca 8372057
>emb|Z81483.2|CEC43D7 Caenorhabditis elegans Cosmid C43D7, complete sequence Length = 34981 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 380 tcagaaaattctgaaaattgc 400 ||||||||||||||||||||| Sbjct: 22641 tcagaaaattctgaaaattgc 22661
>emb|AL132949.2|CEY53F4B Caenorhabditis elegans YAC Y53F4B, complete sequence Length = 227606 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 aattttgttttcagaaaattc 390 ||||||||||||||||||||| Sbjct: 119831 aattttgttttcagaaaattc 119811
>emb|AL672001.7| Mouse DNA sequence from clone RP23-248F16 on chromosome X, complete sequence Length = 191279 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 378 tttcagaaaattctgaaaatt 398 ||||||||||||||||||||| Sbjct: 19901 tttcagaaaattctgaaaatt 19881
>gb|AC092956.5| Homo sapiens 3 BAC RP11-648O5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 194510 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 24 cttttaggttatgcttgcttt 44 ||||||||||||||||||||| Sbjct: 18287 cttttaggttatgcttgcttt 18307
>gb|AC102004.7| Mus musculus chromosome 15, clone RP24-489M6, complete sequence Length = 164810 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 tgttttcagaaaattctgaa 394 |||||||||||||||||||| Sbjct: 88686 tgttttcagaaaattctgaa 88667
>ref|XM_635153.1| Dictyostelium discoideum hypothetical protein (DDB0204166), partial mRNA Length = 243 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 598 ttcaatttctgcaatttttg 617 |||||||||||||||||||| Sbjct: 201 ttcaatttctgcaatttttg 182
>gb|AC163349.3| Mus musculus BAC clone RP23-188F5 from chromosome 3, complete sequence Length = 226848 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 ttttcaacatatcttgccat 460 |||||||||||||||||||| Sbjct: 221828 ttttcaacatatcttgccat 221847
>gb|AC024804.1| Caenorhabditis elegans cosmid Y51H7BR, complete sequence Length = 22392 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 aattttgttttcagaaaatt 389 |||||||||||||||||||| Sbjct: 10076 aattttgttttcagaaaatt 10095
>gb|AY170464.1| Takifugu rubripes C16orf8-like protein, hemoglobin alpha 3 subunit (HBA3), hemoglobin beta subunit (HBB), hemoglobin alpha 4 subunit (HBA4), and leucine carboxyl methyltransferase (LCMT) genes, complete cds Length = 35210 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 275 ggactaacatggaaatttttcacc 298 |||||| ||||||||||||||||| Sbjct: 11500 ggactaccatggaaatttttcacc 11477
>gb|AC117750.7| Mus musculus chromosome 8, clone RP24-325F22, complete sequence Length = 187432 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 catcaaaatttcaatttctg 345 |||||||||||||||||||| Sbjct: 176875 catcaaaatttcaatttctg 176856
>gb|AC124779.4| Mus musculus BAC clone RP23-100O18 from chromosome 6, complete sequence Length = 197482 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 620 caggaaaagttctcctttga 639 |||||||||||||||||||| Sbjct: 45941 caggaaaagttctcctttga 45922
>emb|CT009568.8| M.truncatula DNA sequence from clone MTH2-95K22 on chromosome 3, complete sequence Length = 121926 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 486 tcaatttctacaattttgacccaatttc 513 |||| |||||||||||||||| |||||| Sbjct: 37102 tcaagttctacaattttgacctaatttc 37129
>gb|AC146032.2| Pan troglodytes BAC clone RP43-14B10 from 7, complete sequence Length = 181694 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 370 aattttgttttcagaaaattctga 393 ||||||||||| |||||||||||| Sbjct: 177958 aattttgttttaagaaaattctga 177935
>gb|AY253950.1| HIV-1 isolate Pt07 from Japan envelope glycoprotein (env) gene, partial cds Length = 284 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 aaatctgaaaatttcacaga 256 |||||||||||||||||||| Sbjct: 15 aaatctgaaaatttcacaga 34
>gb|AC146539.2| Gasterosteus aculeatus clone CH213-129C17, complete sequence Length = 202686 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 tcaaaaccagccgaaccacc 166 |||||||||||||||||||| Sbjct: 163215 tcaaaaccagccgaaccacc 163196
>emb|Z48245.1|CET27D1 Caenorhabditis elegans Cosmid T27D1, complete sequence Length = 22559 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 cagaaaattctgaaaattgc 400 |||||||||||||||||||| Sbjct: 12507 cagaaaattctgaaaattgc 12488
>emb|Z83112.1|CEK02B7 Caenorhabditis elegans Cosmid K02B7, complete sequence Length = 15459 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 aaaatctgaaaatttcacag 255 |||||||||||||||||||| Sbjct: 13699 aaaatctgaaaatttcacag 13718
>gb|AC146264.3| Pan troglodytes BAC clone RP43-28O13 from 7, complete sequence Length = 163276 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 370 aattttgttttcagaaaattctga 393 ||||||||||| |||||||||||| Sbjct: 121630 aattttgttttaagaaaattctga 121653
>gb|AC024136.1| Caenorhabditis elegans cosmid F54A3, complete sequence Length = 39990 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 587 ttcatcaaaaattcaatttc 606 |||||||||||||||||||| Sbjct: 20641 ttcatcaaaaattcaatttc 20622
>gb|AC111035.8| Mus musculus chromosome 3, clone RP24-507N18, complete sequence Length = 147759 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 ttttcaacatatcttgccat 460 |||||||||||||||||||| Sbjct: 110997 ttttcaacatatcttgccat 111016
>gb|AC146690.1| Gasterosteus aculeatus clone CH213-156J22, complete sequence Length = 166930 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 tcaaaaccagccgaaccacc 166 |||||||||||||||||||| Sbjct: 134160 tcaaaaccagccgaaccacc 134141
>gb|AC136449.21| Medicago truncatula clone mth2-11k13, complete sequence Length = 112369 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 481 aaatttcaatttctacaattttga 504 |||||||||||||| ||||||||| Sbjct: 53309 aaatttcaatttctccaattttga 53332
>gb|AC133864.32| Medicago truncatula clone mth2-18d12, complete sequence Length = 125734 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 477 atcaaaatttcaatttctacaattttga 504 |||| ||||||||||||| ||||||||| Sbjct: 89952 atcagaatttcaatttcttcaattttga 89925
>emb|AL137021.15| Human DNA sequence from clone RP11-202A15 on chromosome 9q31.1-32, complete sequence Length = 80658 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 468 gagagattcatcaaaatttcaatt 491 |||||||| ||||||||||||||| Sbjct: 22036 gagagattgatcaaaatttcaatt 22059 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 gagagattcatcaaaatttcaatt 341 |||||||| ||||||||||||||| Sbjct: 22036 gagagattgatcaaaatttcaatt 22059
>gb|AC134043.1| Homo sapiens chromosome 5 clone RP11-175K6, complete sequence Length = 154098 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 375 tgttttcagaaaattctgaaaatt 398 ||||||||||||| |||||||||| Sbjct: 18387 tgttttcagaaaaatctgaaaatt 18410
>emb|AL137000.6| Human DNA sequence from clone RP11-203I16 on chromosome 13 Contains the gene for KIAA0970 protein, the COX7CP1 cytochrome c oxidase subunit VIIc pseudogene 1, a novel pseudogene, the GPR38 gene for G protein-coupled receptor 38 and a CpG island, complete sequence Length = 163284 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 tttcagaaaattctgaaaat 397 |||||||||||||||||||| Sbjct: 56166 tttcagaaaattctgaaaat 56147
>emb|AL035407.15|HS419C19 Human DNA sequence from clone RP3-419C19 on chromosome 1q31 Contains the RGS2 gene for regulator of G-protein signalling 2, 24kDa, an unprocessed pseudogene similar to a hypothetical protein (FLJ10996), a processed pseudogene similar to integrin beta 1 binding protein 1 (ITGB1BP1) and a CpG island, complete sequence Length = 111079 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 gaacaggaagcatggcatgt 536 |||||||||||||||||||| Sbjct: 11941 gaacaggaagcatggcatgt 11960
>emb|AL034411.6|HS808P6 Human DNA sequence from clone RP4-808P6 on chromosome Xq24 Contains the SLC6A14 gene for solute carrier family 6 (neurotransmitter transporter) member 14, complete sequence Length = 99271 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 accaccccctcctggtttta 180 |||||||||||||||||||| Sbjct: 58830 accaccccctcctggtttta 58849
>ref|XM_970223.1| PREDICTED: Tribolium castaneum similar to CG17596-PA (LOC664211), mRNA Length = 2217 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 tcatcaaaatttcaatttct 344 |||||||||||||||||||| Sbjct: 1369 tcatcaaaatttcaatttct 1350 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 tcatcaaaatttcaatttct 494 |||||||||||||||||||| Sbjct: 1369 tcatcaaaatttcaatttct 1350
>emb|Z49260.1|SC8156 S.cerevisiae chromosome XIII cosmid 8156 Length = 29987 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 aaaatctgaaaatttcacag 255 |||||||||||||||||||| Sbjct: 6294 aaaatctgaaaatttcacag 6275
>emb|CR857871.1| Pongo pygmaeus mRNA; cDNA DKFZp459M0226 (from clone DKFZp459M0226) Length = 4240 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 gcaattttgttttcagaaaa 387 |||||||||||||||||||| Sbjct: 2930 gcaattttgttttcagaaaa 2911
>gb|AY240994.1| Simian-Human immunodeficiency virus isolate 833-h2-1 envelope glycoprotein (env) gene, partial cds Length = 1372 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 aaatctgaaaatttcacaga 256 |||||||||||||||||||| Sbjct: 713 aaatctgaaaatttcacaga 732
>emb|CR938167.1| Single read from an extremity of a full-length cDNA clone made from Aedes aegypti total adult females. 5-prime end of clone KW0AAA2YI04AAM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 861 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 484 tttcaatttctacaattttg 503 |||||||||||||||||||| Sbjct: 389 tttcaatttctacaattttg 370
>emb|AL732566.5| Mouse DNA sequence from clone RP24-357P21 on chromosome 4, complete sequence Length = 109027 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 ttcagaaaattctgaaaatt 398 |||||||||||||||||||| Sbjct: 73890 ttcagaaaattctgaaaatt 73871
>emb|BX537102.13| Zebrafish DNA sequence from clone DKEY-276L17 in linkage group 14, complete sequence Length = 239944 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 34 atgcttgctttattacctatattg 57 |||||||||||||| ||||||||| Sbjct: 47661 atgcttgctttatttcctatattg 47638
>gb|AC011376.5| Homo sapiens chromosome 5 clone CTB-11I22, complete sequence Length = 132768 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 375 tgttttcagaaaattctgaaaatt 398 ||||||||||||| |||||||||| Sbjct: 85557 tgttttcagaaaaatctgaaaatt 85534
>gb|DQ296926.1| HIV-1 clone 05302001_9 from USA envelope glycoprotein (env) gene, partial cds Length = 2555 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 aaatctgaaaatttcacaga 256 |||||||||||||||||||| Sbjct: 816 aaatctgaaaatttcacaga 835
>gb|AC009222.4| Homo sapiens chromosome 17, clone RP11-429O1, complete sequence Length = 184304 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 ttatgcttgctttattacctatat 55 |||||||||||||||||| ||||| Sbjct: 167175 ttatgcttgctttattacatatat 167152
>gb|AC087714.6| Homo sapiens chromosome 17, clone RP11-167A1, complete sequence Length = 163377 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 32 ttatgcttgctttattacctatat 55 |||||||||||||||||| ||||| Sbjct: 158644 ttatgcttgctttattacatatat 158667
>gb|AC093427.2| Homo sapiens chromosome 1 clone RP5-1080K5, complete sequence Length = 131877 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 tttgttttcagaaaattctg 392 |||||||||||||||||||| Sbjct: 70279 tttgttttcagaaaattctg 70298
>gb|DQ363750.1| Bacillus thuringiensis plasmid pBMB67, complete sequence Length = 67159 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 atattgaagatggttttatt 71 |||||||||||||||||||| Sbjct: 5922 atattgaagatggttttatt 5941
>gb|AC156033.6| Mus musculus BAC clone RP23-377G8 from chromosome 12, complete sequence Length = 216718 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 323 attcatcaaaatttcaatttctgc 346 |||||||||||||| ||||||||| Sbjct: 192115 attcatcaaaatttaaatttctgc 192092
>gb|AC140344.3| Mus musculus BAC clone RP23-237M10 from chromosome 12, complete sequence Length = 205862 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 393 aaaattgcacataacattaagcat 416 ||||||| |||||||||||||||| Sbjct: 133570 aaaattggacataacattaagcat 133593
>gb|AC092854.14| Homo sapiens chromosome 22 clone rp11-39n6 map 22q11, complete sequence Length = 163955 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 aaaatttcaatttctgcaat 349 |||||||||||||||||||| Sbjct: 84981 aaaatttcaatttctgcaat 85000
>ref|NM_065101.1| Caenorhabditis elegans Y48G9A.11 (Y48G9A.11) mRNA, complete cds Length = 1071 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 479 caaaatttcaatttctacaatttt 502 ||||| |||||||||||||||||| Sbjct: 79 caaaacttcaatttctacaatttt 102
>ref|NM_065387.2| Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-252) (tag-252) mRNA, complete cds Length = 1675 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 587 ttcatcaaaaattcaatttc 606 |||||||||||||||||||| Sbjct: 1637 ttcatcaaaaattcaatttc 1618
>dbj|AK017930.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830415B17 product:unclassifiable, full insert sequence Length = 1171 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 620 caggaaaagttctcctttga 639 |||||||||||||||||||| Sbjct: 1113 caggaaaagttctcctttga 1132
>gb|AC005079.6|AC005079 Homo sapiens BAC clone CTA-252P22 from 7, complete sequence Length = 415268 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 370 aattttgttttcagaaaattctga 393 ||||||||||| |||||||||||| Sbjct: 70291 aattttgttttaagaaaattctga 70314
>emb|BX248508.10| Zebrafish DNA sequence from clone CH211-238F11 in linkage group 1, complete sequence Length = 170756 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 481 aaatttcaatttctacaattttga 504 ||||||||||||| |||||||||| Sbjct: 71569 aaatttcaatttcaacaattttga 71546
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 285 ggaaatttttcaccatatttggtc 308 |||||||| ||||||||||||||| Sbjct: 20272406 ggaaatttgtcaccatatttggtc 20272429
>gb|AC079793.7| Homo sapiens BAC clone RP11-570L15 from 2, complete sequence Length = 153489 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 593 aaaaattcaatttctgcaattttt 616 ||||||||| |||||||||||||| Sbjct: 62866 aaaaattcattttctgcaattttt 62843
>gb|AF200890.1|AF200890 HIV-1 98MX.NL04 from Mexico truncated envelope glycoprotein (env) gene, partial cds Length = 888 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 atctgaaaatttcacagaac 258 |||||||||||||||||||| Sbjct: 186 atctgaaaatttcacagaac 205
>gb|AC007041.3| Homo sapiens BAC clone RP11-327N17 from 2, complete sequence Length = 173397 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 593 aaaaattcaatttctgcaattttt 616 ||||||||||||||| |||||||| Sbjct: 89804 aaaaattcaatttcttcaattttt 89827
>dbj|AP004232.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0051H17 Length = 187471 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 285 ggaaatttttcaccatatttggtc 308 |||||||| ||||||||||||||| Sbjct: 178784 ggaaatttgtcaccatatttggtc 178807
>dbj|AP004231.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0026J14 Length = 163496 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 285 ggaaatttttcaccatatttggtc 308 |||||||| ||||||||||||||| Sbjct: 38439 ggaaatttgtcaccatatttggtc 38462
>gb|AC006643.2|AC006643 Caenorhabditis elegans clone F54A3, complete sequence Length = 39990 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 587 ttcatcaaaaattcaatttc 606 |||||||||||||||||||| Sbjct: 20641 ttcatcaaaaattcaatttc 20622
>gb|AF138322.1|AF138322 HIV-1 p7c025-25a from USA envelope glycoprotein (env) gene, partial cds Length = 600 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 aaatctgaaaatttcacaga 256 |||||||||||||||||||| Sbjct: 19 aaatctgaaaatttcacaga 38
>gb|AC155850.6| Mus musculus 6 BAC RP24-545D3 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 195675 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 ttttgttttcagaaaattct 391 |||||||||||||||||||| Sbjct: 134549 ttttgttttcagaaaattct 134568
>gb|AC153831.4| Mus musculus 6 BAC RP23-291M9 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 202080 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 ttttgttttcagaaaattct 391 |||||||||||||||||||| Sbjct: 194646 ttttgttttcagaaaattct 194665
>gb|AC102466.11| Mus musculus chromosome 3, clone RP24-337A2, complete sequence Length = 164455 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 caggaagcatggcatgtgga 539 |||||||||||||||||||| Sbjct: 13999 caggaagcatggcatgtgga 14018
>gb|AC113464.17| Mus musculus chromosome 8, clone RP23-183P1, complete sequence Length = 191444 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 catcaaaatttcaatttctg 345 |||||||||||||||||||| Sbjct: 177338 catcaaaatttcaatttctg 177357
>emb|Z35604.2|CEZK1058 Caenorhabditis elegans Cosmid ZK1058, complete sequence Length = 29101 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 587 ttcatcaaaaattcaatttc 606 |||||||||||||||||||| Sbjct: 21227 ttcatcaaaaattcaatttc 21208
>emb|Z81102.1|CEM02B1 Caenorhabditis elegans Cosmid M02B1, complete sequence Length = 28364 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 593 aaaaattcaatttctgcaattttt 616 ||||||||||||| |||||||||| Sbjct: 26759 aaaaattcaatttttgcaattttt 26736
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 tagaaggaatggcaaaatctgaaa 246 |||||| ||||||||||||||||| Sbjct: 1340865 tagaagaaatggcaaaatctgaaa 1340888
>gb|AE000512.1| Thermotoga maritima MSB8, complete genome Length = 1860725 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 aaaattctgaaaattgcaca 403 |||||||||||||||||||| Sbjct: 1222889 aaaattctgaaaattgcaca 1222870
>gb|L48066.1|HIV512ENV Human immunodeficiency virus type 1 (clone 88ZA512) env gene fragment Length = 1410 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 aaatctgaaaatttcacaga 256 |||||||||||||||||||| Sbjct: 523 aaatctgaaaatttcacaga 542
>emb|BX001002.4| Zebrafish DNA sequence from clone CH211-51G4 in linkage group 14, complete sequence Length = 177858 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 atgcttgctttattacctatattg 57 |||||||||||||| ||||||||| Sbjct: 103496 atgcttgctttatttcctatattg 103519
>gb|AC139573.4| Mus musculus BAC clone RP23-472H13 from 16, complete sequence Length = 189632 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 attcaaccccaaacttcaaa 151 |||||||||||||||||||| Sbjct: 153742 attcaaccccaaacttcaaa 153761
>emb|CT025674.13| Mouse DNA sequence from clone RP24-364I17 on chromosome 13, complete sequence Length = 117646 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 tcagcaggtagaaggaatgg 234 |||||||||||||||||||| Sbjct: 9502 tcagcaggtagaaggaatgg 9521
>dbj|AP006632.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT16I03, TM0056, complete sequence Length = 102883 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 375 tgttttcagaaaattctgaaaatt 398 |||||| ||||||||||||||||| Sbjct: 16878 tgttttaagaaaattctgaaaatt 16901 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,901,228 Number of Sequences: 3902068 Number of extensions: 7901228 Number of successful extensions: 194961 Number of sequences better than 10.0: 93 Number of HSP's better than 10.0 without gapping: 93 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 194073 Number of HSP's gapped (non-prelim): 888 length of query: 640 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 617 effective length of database: 17,143,297,704 effective search space: 10577414683368 effective search space used: 10577414683368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
