| Clone Name | basd1k08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK059561.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-H02, full insert sequence Length = 1983 Score = 626 bits (316), Expect = e-176 Identities = 529/600 (88%) Strand = Plus / Plus Query: 2 ggcgggcgccatcaagccgctcgtctacgcgctgcggaccgggacggcctccgccaagca 61 |||||| ||||||||||||||||| |||||||||||||| || || || || |||||||| Sbjct: 891 ggcgggggccatcaagccgctcgtgtacgcgctgcggacgggcaccgcgtcggccaagca 950 Query: 62 gaatgccgcctgcgcgctgctcagcttgtcgggcatcgaggagaaccgcgccaccatcgg 121 ||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct: 951 gaacgccgcgtgcgcgctgctcagcctctcgggcatcgaggagaaccgcgccaccatcgg 1010 Query: 122 cgcgtgtggcgccatcgcgccgctcgtcgcgctgctctccgcgggctccactcggggaaa 181 |||||| ||||||||| | || ||||||||||||||||||||||||||||| || || || Sbjct: 1011 cgcgtgcggcgccatccctcccctcgtcgcgctgctctccgcgggctccacccgcggcaa 1070 Query: 182 gaaggacgcgctcaccacgctctaccgtctctgctcggcgcgccggaacaaagagcgtgc 241 ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || Sbjct: 1071 gaaggacgcgctcaccacgctctaccggctctgctcggcgcgccggaacaaggagcgcgc 1130 Query: 242 tgtcagcgcgggagccgtcgtgccgctcgtgcacctcatcggcgagcgcggtactgggac 301 |||||||| || ||||||||||||||| | |||||| |||||||||| || | ||||| Sbjct: 1131 ggtcagcgccggcgccgtcgtgccgctcatccacctcgtcggcgagcgtggcagcgggac 1190 Query: 302 atcggagaaggcaatggtggttcttgccagccttgcgagcatagccgagggccgcgatgc 361 |||||||||||||||||||| || |||||||| ||| |||| | |||||||||||| || Sbjct: 1191 gtcggagaaggcaatggtggtcctcgccagcctcgcgggcatcgtcgagggccgcgacgc 1250 Query: 362 tgtggtggaagccggtgggatacccgcactggttgagaccatcgaggacggtccggcgag 421 |||||||| ||||| |||||||| || || || ||||||||||||||||| |||||||| Sbjct: 1251 cgtggtggaggccggcgggataccggcgcttgtcgagaccatcgaggacggcccggcgag 1310 Query: 422 ggagaaggagttcgccgtggtcgctctgctgcagctgtgctccgagtgctccagcaaccg 481 ||||| ||||||||||||||| || ||||||||||| |||||||||||| || ||||||| Sbjct: 1311 ggagagggagttcgccgtggtggcgctgctgcagctctgctccgagtgcccccgcaaccg 1370 Query: 482 tgcgcttctcgttcgagaaggggccatcccaccccttgttgcgctctcacagtccggctc 541 |||||||| || || || || ||||||||||| ||||| |||||||| ||||||||||| Sbjct: 1371 cgcgcttcttgtccgtgagggcgccatcccaccgcttgtcgcgctctcgcagtccggctc 1430 Query: 542 tgctcgtgccaagcacaaggccgagactttgctaggttacttgcgcgagcagcggcaagg 601 ||| ||||||||||||||||| || |||||||| || || | |||||||| |||||||| Sbjct: 1431 tgcccgtgccaagcacaaggctgaaactttgcttgggtatctccgcgagcaacggcaagg 1490
>ref|XM_506432.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1060_D03.106 mRNA Length = 1983 Score = 618 bits (312), Expect = e-174 Identities = 528/600 (88%) Strand = Plus / Plus Query: 2 ggcgggcgccatcaagccgctcgtctacgcgctgcggaccgggacggcctccgccaagca 61 |||||| ||||||||||||||||| |||||||||||||| || || || || |||||||| Sbjct: 891 ggcgggggccatcaagccgctcgtgtacgcgctgcggacgggcaccgcgtcggccaagca 950 Query: 62 gaatgccgcctgcgcgctgctcagcttgtcgggcatcgaggagaaccgcgccaccatcgg 121 ||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct: 951 gaacgccgcgtgcgcgctgctcagcctctcgggcatcgaggagaaccgcgccaccatcgg 1010 Query: 122 cgcgtgtggcgccatcgcgccgctcgtcgcgctgctctccgcgggctccactcggggaaa 181 |||||| ||||||||| | || ||||||||||||||||||||||||||||| || || || Sbjct: 1011 cgcgtgcggcgccatccctcccctcgtcgcgctgctctccgcgggctccacccgcggcaa 1070 Query: 182 gaaggacgcgctcaccacgctctaccgtctctgctcggcgcgccggaacaaagagcgtgc 241 ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || Sbjct: 1071 gaaggacgcgctcaccacgctctaccggctctgctcggcgcgccggaacaaggagcgcgc 1130 Query: 242 tgtcagcgcgggagccgtcgtgccgctcgtgcacctcatcggcgagcgcggtactgggac 301 |||||||| || ||||||||||||||| | |||||| |||||||||| || | ||||| Sbjct: 1131 ggtcagcgccggcgccgtcgtgccgctcatccacctcgtcggcgagcgtggcagcgggac 1190 Query: 302 atcggagaaggcaatggtggttcttgccagccttgcgagcatagccgagggccgcgatgc 361 |||||||||||||||||||| || |||||||| ||| |||| | |||||||||||| || Sbjct: 1191 gtcggagaaggcaatggtggtcctcgccagcctcgcgggcatcgtcgagggccgcgacgc 1250 Query: 362 tgtggtggaagccggtgggatacccgcactggttgagaccatcgaggacggtccggcgag 421 |||||||| || || |||||||| || || || ||||||||||||||||| |||||||| Sbjct: 1251 cgtggtggaggctggcgggataccggcgcttgtcgagaccatcgaggacggcccggcgag 1310 Query: 422 ggagaaggagttcgccgtggtcgctctgctgcagctgtgctccgagtgctccagcaaccg 481 ||||| ||||||||||||||| || ||||||||||| |||||||||||| || ||||||| Sbjct: 1311 ggagagggagttcgccgtggtggcgctgctgcagctctgctccgagtgcccccgcaaccg 1370 Query: 482 tgcgcttctcgttcgagaaggggccatcccaccccttgttgcgctctcacagtccggctc 541 |||||||| || || || || ||||||||||| ||||| |||||||| ||||||||||| Sbjct: 1371 cgcgcttcttgtccgtgagggcgccatcccaccgcttgtcgcgctctcgcagtccggctc 1430 Query: 542 tgctcgtgccaagcacaaggccgagactttgctaggttacttgcgcgagcagcggcaagg 601 ||| ||||||||||||||||| || |||||||| || || | |||||||| |||||||| Sbjct: 1431 tgcccgtgccaagcacaaggctgaaactttgcttgggtatctccgcgagcaacggcaagg 1490
>ref|XM_478916.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1709 Score = 618 bits (312), Expect = e-174 Identities = 528/600 (88%) Strand = Plus / Plus Query: 2 ggcgggcgccatcaagccgctcgtctacgcgctgcggaccgggacggcctccgccaagca 61 |||||| ||||||||||||||||| |||||||||||||| || || || || |||||||| Sbjct: 894 ggcgggggccatcaagccgctcgtgtacgcgctgcggacgggcaccgcgtcggccaagca 953 Query: 62 gaatgccgcctgcgcgctgctcagcttgtcgggcatcgaggagaaccgcgccaccatcgg 121 ||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct: 954 gaacgccgcgtgcgcgctgctcagcctctcgggcatcgaggagaaccgcgccaccatcgg 1013 Query: 122 cgcgtgtggcgccatcgcgccgctcgtcgcgctgctctccgcgggctccactcggggaaa 181 |||||| ||||||||| | || ||||||||||||||||||||||||||||| || || || Sbjct: 1014 cgcgtgcggcgccatccctcccctcgtcgcgctgctctccgcgggctccacccgcggcaa 1073 Query: 182 gaaggacgcgctcaccacgctctaccgtctctgctcggcgcgccggaacaaagagcgtgc 241 ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || Sbjct: 1074 gaaggacgcgctcaccacgctctaccggctctgctcggcgcgccggaacaaggagcgcgc 1133 Query: 242 tgtcagcgcgggagccgtcgtgccgctcgtgcacctcatcggcgagcgcggtactgggac 301 |||||||| || ||||||||||||||| | |||||| |||||||||| || | ||||| Sbjct: 1134 ggtcagcgccggcgccgtcgtgccgctcatccacctcgtcggcgagcgtggcagcgggac 1193 Query: 302 atcggagaaggcaatggtggttcttgccagccttgcgagcatagccgagggccgcgatgc 361 |||||||||||||||||||| || |||||||| ||| |||| | |||||||||||| || Sbjct: 1194 gtcggagaaggcaatggtggtcctcgccagcctcgcgggcatcgtcgagggccgcgacgc 1253 Query: 362 tgtggtggaagccggtgggatacccgcactggttgagaccatcgaggacggtccggcgag 421 |||||||| || || |||||||| || || || ||||||||||||||||| |||||||| Sbjct: 1254 cgtggtggaggctggcgggataccggcgcttgtcgagaccatcgaggacggcccggcgag 1313 Query: 422 ggagaaggagttcgccgtggtcgctctgctgcagctgtgctccgagtgctccagcaaccg 481 ||||| ||||||||||||||| || ||||||||||| |||||||||||| || ||||||| Sbjct: 1314 ggagagggagttcgccgtggtggcgctgctgcagctctgctccgagtgcccccgcaaccg 1373 Query: 482 tgcgcttctcgttcgagaaggggccatcccaccccttgttgcgctctcacagtccggctc 541 |||||||| || || || || ||||||||||| ||||| |||||||| ||||||||||| Sbjct: 1374 cgcgcttcttgtccgtgagggcgccatcccaccgcttgtcgcgctctcgcagtccggctc 1433 Query: 542 tgctcgtgccaagcacaaggccgagactttgctaggttacttgcgcgagcagcggcaagg 601 ||| ||||||||||||||||| || |||||||| || || | |||||||| |||||||| Sbjct: 1434 tgcccgtgccaagcacaaggctgaaactttgcttgggtatctccgcgagcaacggcaagg 1493
>dbj|AK058404.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-B09, full insert sequence Length = 1709 Score = 618 bits (312), Expect = e-174 Identities = 528/600 (88%) Strand = Plus / Plus Query: 2 ggcgggcgccatcaagccgctcgtctacgcgctgcggaccgggacggcctccgccaagca 61 |||||| ||||||||||||||||| |||||||||||||| || || || || |||||||| Sbjct: 894 ggcgggggccatcaagccgctcgtgtacgcgctgcggacgggcaccgcgtcggccaagca 953 Query: 62 gaatgccgcctgcgcgctgctcagcttgtcgggcatcgaggagaaccgcgccaccatcgg 121 ||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct: 954 gaacgccgcgtgcgcgctgctcagcctctcgggcatcgaggagaaccgcgccaccatcgg 1013 Query: 122 cgcgtgtggcgccatcgcgccgctcgtcgcgctgctctccgcgggctccactcggggaaa 181 |||||| ||||||||| | || ||||||||||| ||||||||||||||||| || || || Sbjct: 1014 cgcgtgcggcgccatccctcccctcgtcgcgctactctccgcgggctccacccgcggcaa 1073 Query: 182 gaaggacgcgctcaccacgctctaccgtctctgctcggcgcgccggaacaaagagcgtgc 241 ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || Sbjct: 1074 gaaggacgcgctcaccacgctctaccggctctgctcggcgcgccggaacaaggagcgcgc 1133 Query: 242 tgtcagcgcgggagccgtcgtgccgctcgtgcacctcatcggcgagcgcggtactgggac 301 |||||||| || ||||||||||||||| | |||||| |||||||||| || | ||||| Sbjct: 1134 ggtcagcgccggcgccgtcgtgccgctcatccacctcgtcggcgagcgtggcagcgggac 1193 Query: 302 atcggagaaggcaatggtggttcttgccagccttgcgagcatagccgagggccgcgatgc 361 ||||||||||||||||||||||| |||||||| ||| |||| | |||||||||||| || Sbjct: 1194 gtcggagaaggcaatggtggttctcgccagcctcgcgggcatcgtcgagggccgcgacgc 1253 Query: 362 tgtggtggaagccggtgggatacccgcactggttgagaccatcgaggacggtccggcgag 421 |||||||| || || |||||||| || || || ||||||||||||||||| |||||||| Sbjct: 1254 cgtggtggaggctggcgggataccggcgcttgtcgagaccatcgaggacggcccggcgag 1313 Query: 422 ggagaaggagttcgccgtggtcgctctgctgcagctgtgctccgagtgctccagcaaccg 481 ||||| ||||||||||||||| || ||||||||||| |||||||||||| || ||||||| Sbjct: 1314 ggagagggagttcgccgtggtggcgctgctgcagctctgctccgagtgcccccgcaaccg 1373 Query: 482 tgcgcttctcgttcgagaaggggccatcccaccccttgttgcgctctcacagtccggctc 541 |||||||| || || || || ||||||||||| ||||| |||||||| ||||||||||| Sbjct: 1374 cgcgcttcttgtccgtgagggcgccatcccaccgcttgtcgcgctctcgcagtccggctc 1433 Query: 542 tgctcgtgccaagcacaaggccgagactttgctaggttacttgcgcgagcagcggcaagg 601 ||| ||||||||||||||||| || |||||||| || || | |||||||| |||||||| Sbjct: 1434 tgcccgtgccaagcacaaggctgaaactttgcttgggtatctccgcgagcaacggcaagg 1493
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 603 bits (304), Expect = e-169 Identities = 496/560 (88%) Strand = Plus / Plus Query: 2 ggcgggcgccatcaagccgctcgtctacgcgctgcggaccgggacggcctccgccaagca 61 |||||| ||||||||||||||||| |||||||||||||| || || || || |||||||| Sbjct: 23669086 ggcgggggccatcaagccgctcgtgtacgcgctgcggacgggcaccgcgtcggccaagca 23669145 Query: 62 gaatgccgcctgcgcgctgctcagcttgtcgggcatcgaggagaaccgcgccaccatcgg 121 ||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct: 23669146 gaacgccgcgtgcgcgctgctcagcctctcgggcatcgaggagaaccgcgccaccatcgg 23669205 Query: 122 cgcgtgtggcgccatcgcgccgctcgtcgcgctgctctccgcgggctccactcggggaaa 181 |||||| ||||||||| | || ||||||||||||||||||||||||||||| || || || Sbjct: 23669206 cgcgtgcggcgccatccctcccctcgtcgcgctgctctccgcgggctccacccgcggcaa 23669265 Query: 182 gaaggacgcgctcaccacgctctaccgtctctgctcggcgcgccggaacaaagagcgtgc 241 ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || Sbjct: 23669266 gaaggacgcgctcaccacgctctaccggctctgctcggcgcgccggaacaaggagcgcgc 23669325 Query: 242 tgtcagcgcgggagccgtcgtgccgctcgtgcacctcatcggcgagcgcggtactgggac 301 |||||||| || ||||||||||||||| | |||||| |||||||||| || | ||||| Sbjct: 23669326 ggtcagcgccggcgccgtcgtgccgctcatccacctcgtcggcgagcgtggcagcgggac 23669385 Query: 302 atcggagaaggcaatggtggttcttgccagccttgcgagcatagccgagggccgcgatgc 361 |||||||||||||||||||| || |||||||| ||| |||| | |||||||||||| || Sbjct: 23669386 gtcggagaaggcaatggtggtcctcgccagcctcgcgggcatcgtcgagggccgcgacgc 23669445 Query: 362 tgtggtggaagccggtgggatacccgcactggttgagaccatcgaggacggtccggcgag 421 |||||||| || || |||||||| || || || ||||||||||||||||| |||||||| Sbjct: 23669446 cgtggtggaggctggcgggataccggcgcttgtcgagaccatcgaggacggcccggcgag 23669505 Query: 422 ggagaaggagttcgccgtggtcgctctgctgcagctgtgctccgagtgctccagcaaccg 481 ||||| ||||||||||||||| || ||||||||||| |||||||||||| || ||||||| Sbjct: 23669506 ggagagggagttcgccgtggtggcgctgctgcagctctgctccgagtgcccccgcaaccg 23669565 Query: 482 tgcgcttctcgttcgagaaggggccatcccaccccttgttgcgctctcacagtccggctc 541 |||||||| || || || || ||||||||||| ||||| |||||||| ||||||||||| Sbjct: 23669566 cgcgcttcttgtccgtgagggcgccatcccaccgcttgtcgcgctctcgcagtccggctc 23669625 Query: 542 tgctcgtgccaagcacaagg 561 ||| |||||||||||||||| Sbjct: 23669626 tgcccgtgccaagcacaagg 23669645
>dbj|AP003803.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1060_D03 Length = 102178 Score = 603 bits (304), Expect = e-169 Identities = 496/560 (88%) Strand = Plus / Plus Query: 2 ggcgggcgccatcaagccgctcgtctacgcgctgcggaccgggacggcctccgccaagca 61 |||||| ||||||||||||||||| |||||||||||||| || || || || |||||||| Sbjct: 13700 ggcgggggccatcaagccgctcgtgtacgcgctgcggacgggcaccgcgtcggccaagca 13759 Query: 62 gaatgccgcctgcgcgctgctcagcttgtcgggcatcgaggagaaccgcgccaccatcgg 121 ||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct: 13760 gaacgccgcgtgcgcgctgctcagcctctcgggcatcgaggagaaccgcgccaccatcgg 13819 Query: 122 cgcgtgtggcgccatcgcgccgctcgtcgcgctgctctccgcgggctccactcggggaaa 181 |||||| ||||||||| | || ||||||||||||||||||||||||||||| || || || Sbjct: 13820 cgcgtgcggcgccatccctcccctcgtcgcgctgctctccgcgggctccacccgcggcaa 13879 Query: 182 gaaggacgcgctcaccacgctctaccgtctctgctcggcgcgccggaacaaagagcgtgc 241 ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || Sbjct: 13880 gaaggacgcgctcaccacgctctaccggctctgctcggcgcgccggaacaaggagcgcgc 13939 Query: 242 tgtcagcgcgggagccgtcgtgccgctcgtgcacctcatcggcgagcgcggtactgggac 301 |||||||| || ||||||||||||||| | |||||| |||||||||| || | ||||| Sbjct: 13940 ggtcagcgccggcgccgtcgtgccgctcatccacctcgtcggcgagcgtggcagcgggac 13999 Query: 302 atcggagaaggcaatggtggttcttgccagccttgcgagcatagccgagggccgcgatgc 361 |||||||||||||||||||| || |||||||| ||| |||| | |||||||||||| || Sbjct: 14000 gtcggagaaggcaatggtggtcctcgccagcctcgcgggcatcgtcgagggccgcgacgc 14059 Query: 362 tgtggtggaagccggtgggatacccgcactggttgagaccatcgaggacggtccggcgag 421 |||||||| || || |||||||| || || || ||||||||||||||||| |||||||| Sbjct: 14060 cgtggtggaggctggcgggataccggcgcttgtcgagaccatcgaggacggcccggcgag 14119 Query: 422 ggagaaggagttcgccgtggtcgctctgctgcagctgtgctccgagtgctccagcaaccg 481 ||||| ||||||||||||||| || ||||||||||| |||||||||||| || ||||||| Sbjct: 14120 ggagagggagttcgccgtggtggcgctgctgcagctctgctccgagtgcccccgcaaccg 14179 Query: 482 tgcgcttctcgttcgagaaggggccatcccaccccttgttgcgctctcacagtccggctc 541 |||||||| || || || || ||||||||||| ||||| |||||||| ||||||||||| Sbjct: 14180 cgcgcttcttgtccgtgagggcgccatcccaccgcttgtcgcgctctcgcagtccggctc 14239 Query: 542 tgctcgtgccaagcacaagg 561 ||| |||||||||||||||| Sbjct: 14240 tgcccgtgccaagcacaagg 14259
>dbj|AP003747.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1127_E01 Length = 123787 Score = 603 bits (304), Expect = e-169 Identities = 496/560 (88%) Strand = Plus / Plus Query: 2 ggcgggcgccatcaagccgctcgtctacgcgctgcggaccgggacggcctccgccaagca 61 |||||| ||||||||||||||||| |||||||||||||| || || || || |||||||| Sbjct: 121527 ggcgggggccatcaagccgctcgtgtacgcgctgcggacgggcaccgcgtcggccaagca 121586 Query: 62 gaatgccgcctgcgcgctgctcagcttgtcgggcatcgaggagaaccgcgccaccatcgg 121 ||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct: 121587 gaacgccgcgtgcgcgctgctcagcctctcgggcatcgaggagaaccgcgccaccatcgg 121646 Query: 122 cgcgtgtggcgccatcgcgccgctcgtcgcgctgctctccgcgggctccactcggggaaa 181 |||||| ||||||||| | || ||||||||||||||||||||||||||||| || || || Sbjct: 121647 cgcgtgcggcgccatccctcccctcgtcgcgctgctctccgcgggctccacccgcggcaa 121706 Query: 182 gaaggacgcgctcaccacgctctaccgtctctgctcggcgcgccggaacaaagagcgtgc 241 ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || Sbjct: 121707 gaaggacgcgctcaccacgctctaccggctctgctcggcgcgccggaacaaggagcgcgc 121766 Query: 242 tgtcagcgcgggagccgtcgtgccgctcgtgcacctcatcggcgagcgcggtactgggac 301 |||||||| || ||||||||||||||| | |||||| |||||||||| || | ||||| Sbjct: 121767 ggtcagcgccggcgccgtcgtgccgctcatccacctcgtcggcgagcgtggcagcgggac 121826 Query: 302 atcggagaaggcaatggtggttcttgccagccttgcgagcatagccgagggccgcgatgc 361 |||||||||||||||||||| || |||||||| ||| |||| | |||||||||||| || Sbjct: 121827 gtcggagaaggcaatggtggtcctcgccagcctcgcgggcatcgtcgagggccgcgacgc 121886 Query: 362 tgtggtggaagccggtgggatacccgcactggttgagaccatcgaggacggtccggcgag 421 |||||||| || || |||||||| || || || ||||||||||||||||| |||||||| Sbjct: 121887 cgtggtggaggctggcgggataccggcgcttgtcgagaccatcgaggacggcccggcgag 121946 Query: 422 ggagaaggagttcgccgtggtcgctctgctgcagctgtgctccgagtgctccagcaaccg 481 ||||| ||||||||||||||| || ||||||||||| |||||||||||| || ||||||| Sbjct: 121947 ggagagggagttcgccgtggtggcgctgctgcagctctgctccgagtgcccccgcaaccg 122006 Query: 482 tgcgcttctcgttcgagaaggggccatcccaccccttgttgcgctctcacagtccggctc 541 |||||||| || || || || ||||||||||| ||||| |||||||| ||||||||||| Sbjct: 122007 cgcgcttcttgtccgtgagggcgccatcccaccgcttgtcgcgctctcgcagtccggctc 122066 Query: 542 tgctcgtgccaagcacaagg 561 ||| |||||||||||||||| Sbjct: 122067 tgcccgtgccaagcacaagg 122086
>ref|NM_188926.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1758 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Plus Query: 98 cgaggagaaccgcgccaccatcggcg 123 |||||||||||||||| ||||||||| Sbjct: 1059 cgaggagaaccgcgccgccatcggcg 1084
>gb|AC147802.2| Oryza sativa chromosome 3 BAC OSJNBb0013C14 genomic sequence, complete sequence Length = 132981 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Plus Query: 129 ggcgccatcgcgccgctcgtcgcgct 154 ||||||||| |||||||||||||||| Sbjct: 84975 ggcgccatcccgccgctcgtcgcgct 85000
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Plus Query: 129 ggcgccatcgcgccgctcgtcgcgct 154 ||||||||| |||||||||||||||| Sbjct: 18180370 ggcgccatcccgccgctcgtcgcgct 18180395
>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29 Length = 296500 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 255 gccgtcgtgccgctcgtgcacc 276 |||||||||||||||||||||| Sbjct: 210395 gccgtcgtgccgctcgtgcacc 210416
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Plus Query: 129 ggcgccatcgcgccgctcgtcgcgctgctc 158 ||||||||| |||||||||||||| ||||| Sbjct: 14884111 ggcgccatcccgccgctcgtcgcgatgctc 14884140
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 98 cgaggagaaccgcgccaccatcggcg 123 |||||||||||||||| ||||||||| Sbjct: 20189188 cgaggagaaccgcgccgccatcggcg 20189163
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Plus Query: 129 ggcgccatcgcgccgctcgtcgcgct 154 ||||||||| |||||||||||||||| Sbjct: 18173911 ggcgccatcccgccgctcgtcgcgct 18173936
>dbj|AP005784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0014G10 Length = 164147 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Plus Query: 129 ggcgccatcgcgccgctcgtcgcgctgctc 158 ||||||||| |||||||||||||| ||||| Sbjct: 92450 ggcgccatcccgccgctcgtcgcgatgctc 92479
>dbj|AP005301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0077M12 Length = 145337 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 98 cgaggagaaccgcgccaccatcggcg 123 |||||||||||||||| ||||||||| Sbjct: 54974 cgaggagaaccgcgccgccatcggcg 54949
>gb|AC116811.15| Mus musculus chromosome 6, clone RP24-356D15, complete sequence Length = 150909 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 590 gcagcggcaagggggcggct 609 |||||||||||||||||||| Sbjct: 90583 gcagcggcaagggggcggct 90564
>gb|BC054472.1| Mus musculus hexokinase 2, mRNA (cDNA clone MGC:62607 IMAGE:6465367), complete cds Length = 5441 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 590 gcagcggcaagggggcggct 609 |||||||||||||||||||| Sbjct: 1736 gcagcggcaagggggcggct 1755
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 atcgcgccgctcgtcgcgct 154 |||||||||||||||||||| Sbjct: 1755038 atcgcgccgctcgtcgcgct 1755057
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 tcgcgccgctcgtcgcgctg 155 |||||||||||||||||||| Sbjct: 36131 tcgcgccgctcgtcgcgctg 36112
>ref|NM_013820.1| Mus musculus hexokinase 2 (Hk2), mRNA Length = 5496 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 590 gcagcggcaagggggcggct 609 |||||||||||||||||||| Sbjct: 1822 gcagcggcaagggggcggct 1841
>gb|AC122010.3| Mus musculus BAC clone RP24-349I15 from chromosome 8, complete sequence Length = 198118 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 gatgctgtggtggaagccgg 376 |||||||||||||||||||| Sbjct: 38929 gatgctgtggtggaagccgg 38948
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 ccgccaagcagaatgccgcc 71 |||||||||||||||||||| Sbjct: 911308 ccgccaagcagaatgccgcc 911327
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 atcgcgccgctcgtcgcgct 154 |||||||||||||||||||| Sbjct: 3089931 atcgcgccgctcgtcgcgct 3089950
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 tcgcgccgctcgtcgcgctg 155 |||||||||||||||||||| Sbjct: 3866347 tcgcgccgctcgtcgcgctg 3866328
>emb|AJ238540.1|MMU238540 Mus musculus mRNA for hexokinase II Length = 5474 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 590 gcagcggcaagggggcggct 609 |||||||||||||||||||| Sbjct: 1760 gcagcggcaagggggcggct 1779
>dbj|AK145936.1| Mus musculus 14 days pregnant adult female placenta cDNA, RIKEN full-length enriched library, clone:I530016N07 product:hexokinase 2, full insert sequence Length = 3397 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 590 gcagcggcaagggggcggct 609 |||||||||||||||||||| Sbjct: 1798 gcagcggcaagggggcggct 1817
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 atcgcgccgctcgtcgcgct 154 |||||||||||||||||||| Sbjct: 2238557 atcgcgccgctcgtcgcgct 2238576
>ref|XM_394452.1| PREDICTED: Apis mellifera similar to CG32645-PB (LOC410976), mRNA Length = 2436 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 135 atcgcgccgctcgtcgcgctgctc 158 |||| ||||||||||||||||||| Sbjct: 309 atcgtgccgctcgtcgcgctgctc 286
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 131 cgccatcgcgccgctcgtcgcgct 154 |||| ||||||||||||||||||| Sbjct: 2708398 cgccgtcgcgccgctcgtcgcgct 2708375
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 gctcgtcgcgctgctctccg 162 |||||||||||||||||||| Sbjct: 505537 gctcgtcgcgctgctctccg 505518
>gb|AC007305.40| Mus musculus strain 129/SvJ clone mgs1-211l20 map 6, complete sequence Length = 214840 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 590 gcagcggcaagggggcggct 609 |||||||||||||||||||| Sbjct: 2189 gcagcggcaagggggcggct 2170
>emb|Y11668.1|MMHEXII3 Mus musculus gene for hexokinase II, exon 3-18 Length = 28646 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 590 gcagcggcaagggggcggct 609 |||||||||||||||||||| Sbjct: 15739 gcagcggcaagggggcggct 15758
>gb|AC156028.2| Mus musculus BAC clone RP23-61A11 from chromosome 8, complete sequence Length = 212724 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 gatgctgtggtggaagccgg 376 |||||||||||||||||||| Sbjct: 16460 gatgctgtggtggaagccgg 16441
>gb|AC134525.5| Mus musculus BAC clone RP24-496F7 from 8, complete sequence Length = 215900 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 gatgctgtggtggaagccgg 376 |||||||||||||||||||| Sbjct: 22868 gatgctgtggtggaagccgg 22887
>gb|AC153850.3| Mus musculus 6 BAC RP23-81F19 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 194042 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 590 gcagcggcaagggggcggct 609 |||||||||||||||||||| Sbjct: 129408 gcagcggcaagggggcggct 129427 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,361,098 Number of Sequences: 3902068 Number of extensions: 3361098 Number of successful extensions: 64310 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62172 Number of HSP's gapped (non-prelim): 2138 length of query: 609 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 586 effective length of database: 17,143,297,704 effective search space: 10045972454544 effective search space used: 10045972454544 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)