ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd1j19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473275.1| Oryza sativa (japonica cultivar-group), predic... 299 5e-78
2dbj|AK120331.1| Oryza sativa (japonica cultivar-group) cDNA clon... 299 5e-78
3emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4,... 192 8e-46
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 192 8e-46
5emb|AL442109.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 192 8e-46
6emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4,... 192 8e-46
7dbj|AP004579.1| Lotus japonicus genomic DNA, chromosome 2, clone... 56 1e-04
8dbj|AP004576.1| Lotus japonicus genomic DNA, chromosome 2, clone... 56 1e-04
9gb|AC122849.4| Mus musculus BAC clone RP23-167F18 from 13, compl... 44 0.47
10dbj|AB041811.1| Lycopersicon esculentum LEXYL1 mRNA, complete cds 44 0.47
11ref|NM_117631.2| Arabidopsis thaliana nucleic acid binding / zin... 42 1.9
12gb|AY691332.1| Lycopersicon esculentum MAPKK (LeMKK3) mRNA, comp... 42 1.9
13ref|NM_183652.1| Oryza sativa (japonica cultivar-group), predic... 42 1.9
14gb|AY143927.1| Arabidopsis thaliana At4g15420/dl3755w mRNA, comp... 42 1.9
15emb|BX323051.6| Zebrafish DNA sequence from clone DKEYP-12A4, co... 42 1.9
16gb|AC090999.1| Caenorhabditis elegans cosmid Y82E9BR, complete s... 42 1.9
17gb|AF446353.1|AF446353 Arabidopsis thaliana AT4g15420/dl3755w mR... 42 1.9
18gb|AF315735.1|AF315735 Arabidopsis thaliana PRLI-interacting fac... 42 1.9
19gb|AY086035.1| Arabidopsis thaliana clone 207652 mRNA, complete ... 42 1.9
20dbj|AK105791.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
21emb|Z97338.2|ATFCA3 Arabidopsis thaliana DNA chromosome 4, ESSA ... 42 1.9
22emb|AL161541.2|ATCHRIV41 Arabidopsis thaliana DNA chromosome 4, ... 42 1.9
23ref|XM_632698.1| Dictyostelium discoideum hypothetical protein (... 40 7.4
24emb|AJ965256.1| Dehalococcoides sp. CBDB1 complete genome 40 7.4
25gb|AC107721.6| Mus musculus chromosome 5, clone RP23-317I8, comp... 40 7.4
26emb|CR450819.7| Zebrafish DNA sequence from clone DKEY-245G2 in ... 40 7.4
27emb|BX119321.4| Human DNA sequence from clone RP5-908D6 on chrom... 40 7.4
28emb|AL138729.11| Human DNA sequence from clone RP1-172I22 on chr... 40 7.4
29gb|AE014256.1| Streptococcus agalactiae 2603V/R section 66 of 10... 40 7.4
30emb|AL596169.1| Listeria innocua Clip11262 complete genome, segm... 40 7.4
31emb|CR788314.7| Zebrafish DNA sequence from clone DKEY-205J18 in... 40 7.4
32emb|BX470263.9| Zebrafish DNA sequence from clone DKEY-15P9 in l... 40 7.4
33gb|AC104182.2| Homo sapiens chromosome 3 clone RP11-141G23, comp... 40 7.4
34ref|XM_623085.1| PREDICTED: Apis mellifera similar to TBP (LOC55... 40 7.4
35gb|AC027281.10| Homo sapiens chromosome 16 clone RP11-424M24, co... 40 7.4
36gb|AC153611.12| Mus musculus 6 BAC RP23-110P14 (Roswell Park Can... 40 7.4
37gb|AC005411.1|AC005411 Homo sapiens chromosome 17, clone hRPK.72... 40 7.4
38gb|AC005375.4|AC005375 Homo sapiens chromosome 17, clone hRPK.38... 40 7.4
39emb|AL355818.13| Human DNA sequence from clone RP4-667C9 on chro... 40 7.4 
>ref|XM_473275.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2313

 Score =  299 bits (151), Expect = 5e-78
 Identities = 394/475 (82%)
 Strand = Plus / Plus

                                                                        
Query: 40   atggatttggcgaagccattgaagcagctaaaagagctgatattgttgttgtgattgccg 99
            |||||||||| ||||| |||||||||||||| ||||||||| |||||||| | ||||| |
Sbjct: 1400 atggatttggtgaagcgattgaagcagctaagagagctgatgttgttgttctaattgctg 1459

                                                                        
Query: 100  ggttgaacctgactcaggagagcgaagatcttgatagagtgacccttctccttccaggca 159
            |||||||||||||| | || |  ||||||| ||||||||||| |||||||||||||||||
Sbjct: 1460 ggttgaacctgactgaagaaacggaagatcatgatagagtgagccttctccttccaggca 1519

                                                                        
Query: 160  ggcagcaggatcttgtgaatatcattgccagtgtaacaaagaagcctattgtgttggtta 219
            |||||  ||||||  |  |||   ||||||||||||||||||| ||  ||||||||||  
Sbjct: 1520 ggcagatggatctcatacatactgttgccagtgtaacaaagaaacccgttgtgttggtac 1579

                                                                        
Query: 220  tcactggcggcggtcctgtcgatgttgcttttgcgaagcaagatccaagaattgcaagtg 279
            |||  || || |||||||| |||||| | ||||| ||||| |||||| | ||||| ||  
Sbjct: 1580 tcatgggtggtggtcctgttgatgtttcatttgcaaagcatgatccacgtattgcgagca 1639

                                                                        
Query: 280  tcctgtggattggatatccaggggaagttggtggacaagttcttccagaaattcttttcg 339
            | || |||||||| ||||| || || ||||||||| | |||||||||||||| |||||||
Sbjct: 1640 ttctttggattggttatcctggcgaggttggtggaaatgttcttccagaaatccttttcg 1699

                                                                        
Query: 340  gagagtacaatccaggaggaaaattgcccatgacttggtaccccgaatccttcaccgcgg 399
            |  | ||||| |||||||||||  ||||||| ||||||||||| ||||||||||| || |
Sbjct: 1700 ggaaatacaacccaggaggaaagctgcccataacttggtaccctgaatccttcactgctg 1759

                                                                        
Query: 400  ttccaatgaatgatatgaacatgagagccgacccttcacgcggctaccctggaagaacat 459
            |||| ||| ||||||||||||||||||| ||  | ||||| || ||||| ||||||||||
Sbjct: 1760 ttccgatggatgatatgaacatgagagctgatgcgtcacgtggttacccaggaagaacat 1819

                                                                   
Query: 460  atcggttttacaccggagaagttgtgtatggttttggatacggtctgagctactc 514
            |  | |||||||| ||||| || || ||||| ||||| || ||| ||||||||||
Sbjct: 1820 acagattttacactggagatgtagtatatgggtttgggtatggtttgagctactc 1874
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>dbj|AK120331.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058N01, full
            insert sequence
          Length = 2527

 Score =  299 bits (151), Expect = 5e-78
 Identities = 394/475 (82%)
 Strand = Plus / Plus

                                                                        
Query: 40   atggatttggcgaagccattgaagcagctaaaagagctgatattgttgttgtgattgccg 99
            |||||||||| ||||| |||||||||||||| ||||||||| |||||||| | ||||| |
Sbjct: 1434 atggatttggtgaagcgattgaagcagctaagagagctgatgttgttgttctaattgctg 1493

                                                                        
Query: 100  ggttgaacctgactcaggagagcgaagatcttgatagagtgacccttctccttccaggca 159
            |||||||||||||| | || |  ||||||| ||||||||||| |||||||||||||||||
Sbjct: 1494 ggttgaacctgactgaagaaacggaagatcatgatagagtgagccttctccttccaggca 1553

                                                                        
Query: 160  ggcagcaggatcttgtgaatatcattgccagtgtaacaaagaagcctattgtgttggtta 219
            |||||  ||||||  |  |||   ||||||||||||||||||| ||  ||||||||||  
Sbjct: 1554 ggcagatggatctcatacatactgttgccagtgtaacaaagaaacccgttgtgttggtac 1613

                                                                        
Query: 220  tcactggcggcggtcctgtcgatgttgcttttgcgaagcaagatccaagaattgcaagtg 279
            |||  || || |||||||| |||||| | ||||| ||||| |||||| | ||||| ||  
Sbjct: 1614 tcatgggtggtggtcctgttgatgtttcatttgcaaagcatgatccacgtattgcgagca 1673

                                                                        
Query: 280  tcctgtggattggatatccaggggaagttggtggacaagttcttccagaaattcttttcg 339
            | || |||||||| ||||| || || ||||||||| | |||||||||||||| |||||||
Sbjct: 1674 ttctttggattggttatcctggcgaggttggtggaaatgttcttccagaaatccttttcg 1733

                                                                        
Query: 340  gagagtacaatccaggaggaaaattgcccatgacttggtaccccgaatccttcaccgcgg 399
            |  | ||||| |||||||||||  ||||||| ||||||||||| ||||||||||| || |
Sbjct: 1734 ggaaatacaacccaggaggaaagctgcccataacttggtaccctgaatccttcactgctg 1793

                                                                        
Query: 400  ttccaatgaatgatatgaacatgagagccgacccttcacgcggctaccctggaagaacat 459
            |||| ||| ||||||||||||||||||| ||  | ||||| || ||||| ||||||||||
Sbjct: 1794 ttccgatggatgatatgaacatgagagctgatgcgtcacgtggttacccaggaagaacat 1853

                                                                   
Query: 460  atcggttttacaccggagaagttgtgtatggttttggatacggtctgagctactc 514
            |  | |||||||| ||||| || || ||||| ||||| || ||| ||||||||||
Sbjct: 1854 acagattttacactggagatgtagtatatgggtttgggtatggtttgagctactc 1908
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>emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081C01,
             complete sequence
          Length = 140454

 Score =  192 bits (97), Expect = 8e-46
 Identities = 250/301 (83%)
 Strand = Plus / Minus

                                                                         
Query: 40    atggatttggcgaagccattgaagcagctaaaagagctgatattgttgttgtgattgccg 99
             |||||||||| ||||| |||||||||||||| ||||||||| |||||||| | ||||| |
Sbjct: 54748 atggatttggtgaagcgattgaagcagctaagagagctgatgttgttgttctaattgctg 54689

                                                                         
Query: 100   ggttgaacctgactcaggagagcgaagatcttgatagagtgacccttctccttccaggca 159
             |||||||||||||| | || |  ||||||| ||||||||||| |||||||||||||||||
Sbjct: 54688 ggttgaacctgactgaagaaacggaagatcatgatagagtgagccttctccttccaggca 54629

                                                                         
Query: 160   ggcagcaggatcttgtgaatatcattgccagtgtaacaaagaagcctattgtgttggtta 219
             |||||  ||||||  |  |||   ||||||||||||||||||| ||  ||||||||||  
Sbjct: 54628 ggcagatggatctcatacatactgttgccagtgtaacaaagaaacccgttgtgttggtac 54569

                                                                         
Query: 220   tcactggcggcggtcctgtcgatgttgcttttgcgaagcaagatccaagaattgcaagtg 279
             |||  || || |||||||| |||||| | ||||| ||||| |||||| | ||||| ||  
Sbjct: 54568 tcatgggtggtggtcctgttgatgtttcatttgcaaagcatgatccacgtattgcgagca 54509

                                                                         
Query: 280   tcctgtggattggatatccaggggaagttggtggacaagttcttccagaaattcttttcg 339
             | || |||||||| ||||| || || ||||||||| | |||||||||||||| |||||||
Sbjct: 54508 ttctttggattggttatcctggcgaggttggtggaaatgttcttccagaaatccttttcg 54449

              
Query: 340   g 340
             |
Sbjct: 54448 g 54448



 Score =  115 bits (58), Expect = 2e-22
 Identities = 136/162 (83%)
 Strand = Plus / Minus

                                                                         
Query: 353   aggaggaaaattgcccatgacttggtaccccgaatccttcaccgcggttccaatgaatga 412
             |||||||||  ||||||| ||||||||||| ||||||||||| || ||||| ||| ||||
Sbjct: 54341 aggaggaaagctgcccataacttggtaccctgaatccttcactgctgttccgatggatga 54282

                                                                         
Query: 413   tatgaacatgagagccgacccttcacgcggctaccctggaagaacatatcggttttacac 472
             ||||||||||||||| ||  | ||||| || ||||| |||||||||||  | ||||||||
Sbjct: 54281 tatgaacatgagagctgatgcgtcacgtggttacccaggaagaacatacagattttacac 54222

                                                       
Query: 473   cggagaagttgtgtatggttttggatacggtctgagctactc 514
              ||||| || || ||||| ||||| || ||| ||||||||||
Sbjct: 54221 tggagatgtagtatatgggtttgggtatggtttgagctactc 54180
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  192 bits (97), Expect = 8e-46
 Identities = 250/301 (83%)
 Strand = Plus / Minus

                                                                            
Query: 40       atggatttggcgaagccattgaagcagctaaaagagctgatattgttgttgtgattgccg 99
                |||||||||| ||||| |||||||||||||| ||||||||| |||||||| | ||||| |
Sbjct: 26517861 atggatttggtgaagcgattgaagcagctaagagagctgatgttgttgttctaattgctg 26517802

                                                                            
Query: 100      ggttgaacctgactcaggagagcgaagatcttgatagagtgacccttctccttccaggca 159
                |||||||||||||| | || |  ||||||| ||||||||||| |||||||||||||||||
Sbjct: 26517801 ggttgaacctgactgaagaaacggaagatcatgatagagtgagccttctccttccaggca 26517742

                                                                            
Query: 160      ggcagcaggatcttgtgaatatcattgccagtgtaacaaagaagcctattgtgttggtta 219
                |||||  ||||||  |  |||   ||||||||||||||||||| ||  ||||||||||  
Sbjct: 26517741 ggcagatggatctcatacatactgttgccagtgtaacaaagaaacccgttgtgttggtac 26517682

                                                                            
Query: 220      tcactggcggcggtcctgtcgatgttgcttttgcgaagcaagatccaagaattgcaagtg 279
                |||  || || |||||||| |||||| | ||||| ||||| |||||| | ||||| ||  
Sbjct: 26517681 tcatgggtggtggtcctgttgatgtttcatttgcaaagcatgatccacgtattgcgagca 26517622

                                                                            
Query: 280      tcctgtggattggatatccaggggaagttggtggacaagttcttccagaaattcttttcg 339
                | || |||||||| ||||| || || ||||||||| | |||||||||||||| |||||||
Sbjct: 26517621 ttctttggattggttatcctggcgaggttggtggaaatgttcttccagaaatccttttcg 26517562

                 
Query: 340      g 340
                |
Sbjct: 26517561 g 26517561



 Score =  115 bits (58), Expect = 2e-22
 Identities = 136/162 (83%)
 Strand = Plus / Minus

                                                                            
Query: 353      aggaggaaaattgcccatgacttggtaccccgaatccttcaccgcggttccaatgaatga 412
                |||||||||  ||||||| ||||||||||| ||||||||||| || ||||| ||| ||||
Sbjct: 26517454 aggaggaaagctgcccataacttggtaccctgaatccttcactgctgttccgatggatga 26517395

                                                                            
Query: 413      tatgaacatgagagccgacccttcacgcggctaccctggaagaacatatcggttttacac 472
                ||||||||||||||| ||  | ||||| || ||||| |||||||||||  | ||||||||
Sbjct: 26517394 tatgaacatgagagctgatgcgtcacgtggttacccaggaagaacatacagattttacac 26517335

                                                          
Query: 473      cggagaagttgtgtatggttttggatacggtctgagctactc 514
                 ||||| || || ||||| ||||| || ||| ||||||||||
Sbjct: 26517334 tggagatgtagtatatgggtttgggtatggtttgagctactc 26517293
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>emb|AL442109.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B1011H02, complete
             sequence
          Length = 40167

 Score =  192 bits (97), Expect = 8e-46
 Identities = 250/301 (83%)
 Strand = Plus / Minus

                                                                         
Query: 40    atggatttggcgaagccattgaagcagctaaaagagctgatattgttgttgtgattgccg 99
             |||||||||| ||||| |||||||||||||| ||||||||| |||||||| | ||||| |
Sbjct: 16680 atggatttggtgaagcgattgaagcagctaagagagctgatgttgttgttctaattgctg 16621

                                                                         
Query: 100   ggttgaacctgactcaggagagcgaagatcttgatagagtgacccttctccttccaggca 159
             |||||||||||||| | || |  ||||||| ||||||||||| |||||||||||||||||
Sbjct: 16620 ggttgaacctgactgaagaaacggaagatcatgatagagtgagccttctccttccaggca 16561

                                                                         
Query: 160   ggcagcaggatcttgtgaatatcattgccagtgtaacaaagaagcctattgtgttggtta 219
             |||||  ||||||  |  |||   ||||||||||||||||||| ||  ||||||||||  
Sbjct: 16560 ggcagatggatctcatacatactgttgccagtgtaacaaagaaacccgttgtgttggtac 16501

                                                                         
Query: 220   tcactggcggcggtcctgtcgatgttgcttttgcgaagcaagatccaagaattgcaagtg 279
             |||  || || |||||||| |||||| | ||||| ||||| |||||| | ||||| ||  
Sbjct: 16500 tcatgggtggtggtcctgttgatgtttcatttgcaaagcatgatccacgtattgcgagca 16441

                                                                         
Query: 280   tcctgtggattggatatccaggggaagttggtggacaagttcttccagaaattcttttcg 339
             | || |||||||| ||||| || || ||||||||| | |||||||||||||| |||||||
Sbjct: 16440 ttctttggattggttatcctggcgaggttggtggaaatgttcttccagaaatccttttcg 16381

              
Query: 340   g 340
             |
Sbjct: 16380 g 16380



 Score =  115 bits (58), Expect = 2e-22
 Identities = 136/162 (83%)
 Strand = Plus / Minus

                                                                         
Query: 353   aggaggaaaattgcccatgacttggtaccccgaatccttcaccgcggttccaatgaatga 412
             |||||||||  ||||||| ||||||||||| ||||||||||| || ||||| ||| ||||
Sbjct: 16273 aggaggaaagctgcccataacttggtaccctgaatccttcactgctgttccgatggatga 16214

                                                                         
Query: 413   tatgaacatgagagccgacccttcacgcggctaccctggaagaacatatcggttttacac 472
             ||||||||||||||| ||  | ||||| || ||||| |||||||||||  | ||||||||
Sbjct: 16213 tatgaacatgagagctgatgcgtcacgtggttacccaggaagaacatacagattttacac 16154

                                                       
Query: 473   cggagaagttgtgtatggttttggatacggtctgagctactc 514
              ||||| || || ||||| ||||| || ||| ||||||||||
Sbjct: 16153 tggagatgtagtatatgggtttgggtatggtttgagctactc 16112
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>emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08,
              complete sequence
          Length = 171551

 Score =  192 bits (97), Expect = 8e-46
 Identities = 250/301 (83%)
 Strand = Plus / Minus

                                                                          
Query: 40     atggatttggcgaagccattgaagcagctaaaagagctgatattgttgttgtgattgccg 99
              |||||||||| ||||| |||||||||||||| ||||||||| |||||||| | ||||| |
Sbjct: 158501 atggatttggtgaagcgattgaagcagctaagagagctgatgttgttgttctaattgctg 158442

                                                                          
Query: 100    ggttgaacctgactcaggagagcgaagatcttgatagagtgacccttctccttccaggca 159
              |||||||||||||| | || |  ||||||| ||||||||||| |||||||||||||||||
Sbjct: 158441 ggttgaacctgactgaagaaacggaagatcatgatagagtgagccttctccttccaggca 158382

                                                                          
Query: 160    ggcagcaggatcttgtgaatatcattgccagtgtaacaaagaagcctattgtgttggtta 219
              |||||  ||||||  |  |||   ||||||||||||||||||| ||  ||||||||||  
Sbjct: 158381 ggcagatggatctcatacatactgttgccagtgtaacaaagaaacccgttgtgttggtac 158322

                                                                          
Query: 220    tcactggcggcggtcctgtcgatgttgcttttgcgaagcaagatccaagaattgcaagtg 279
              |||  || || |||||||| |||||| | ||||| ||||| |||||| | ||||| ||  
Sbjct: 158321 tcatgggtggtggtcctgttgatgtttcatttgcaaagcatgatccacgtattgcgagca 158262

                                                                          
Query: 280    tcctgtggattggatatccaggggaagttggtggacaagttcttccagaaattcttttcg 339
              | || |||||||| ||||| || || ||||||||| | |||||||||||||| |||||||
Sbjct: 158261 ttctttggattggttatcctggcgaggttggtggaaatgttcttccagaaatccttttcg 158202

               
Query: 340    g 340
              |
Sbjct: 158201 g 158201



 Score =  115 bits (58), Expect = 2e-22
 Identities = 136/162 (83%)
 Strand = Plus / Minus

                                                                          
Query: 353    aggaggaaaattgcccatgacttggtaccccgaatccttcaccgcggttccaatgaatga 412
              |||||||||  ||||||| ||||||||||| ||||||||||| || ||||| ||| ||||
Sbjct: 158094 aggaggaaagctgcccataacttggtaccctgaatccttcactgctgttccgatggatga 158035

                                                                          
Query: 413    tatgaacatgagagccgacccttcacgcggctaccctggaagaacatatcggttttacac 472
              ||||||||||||||| ||  | ||||| || ||||| |||||||||||  | ||||||||
Sbjct: 158034 tatgaacatgagagctgatgcgtcacgtggttacccaggaagaacatacagattttacac 157975

                                                        
Query: 473    cggagaagttgtgtatggttttggatacggtctgagctactc 514
               ||||| || || ||||| ||||| || ||| ||||||||||
Sbjct: 157974 tggagatgtagtatatgggtttgggtatggtttgagctactc 157933
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>dbj|AP004579.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT11E23, TM0557
          Length = 87695

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 88/108 (81%)
 Strand = Plus / Minus

                                                                         
Query: 369   atgacttggtaccccgaatccttcaccgcggttccaatgaatgatatgaacatgagagcc 428
             |||||||||||||| || || || |||   ||||| |||||||| |||| |||| |||| 
Sbjct: 74906 atgacttggtaccctgagtcatttaccaatgttcccatgaatgacatgagcatgcgagct 74847

                                                             
Query: 429   gacccttcacgcggctaccctggaagaacatatcggttttacaccgga 476
             || ||||||||||| || || ||||| || || || ||||||||||||
Sbjct: 74846 gatccttcacgcggttatccaggaaggacctaccgattttacaccgga 74799
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>dbj|AP004576.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01N11, TM0177,
              complete sequence
          Length = 133589

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 88/108 (81%)
 Strand = Plus / Plus

                                                                          
Query: 369    atgacttggtaccccgaatccttcaccgcggttccaatgaatgatatgaacatgagagcc 428
              |||||||||||||| || || || |||   ||||| |||||||| |||| |||| |||| 
Sbjct: 110103 atgacttggtaccctgagtcatttaccaatgttcccatgaatgacatgagcatgcgagct 110162

                                                              
Query: 429    gacccttcacgcggctaccctggaagaacatatcggttttacaccgga 476
              || ||||||||||| || || ||||| || || || ||||||||||||
Sbjct: 110163 gatccttcacgcggttatccaggaaggacctaccgattttacaccgga 110210
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>gb|AC122849.4| Mus musculus BAC clone RP23-167F18 from 13, complete sequence
          Length = 202768

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 259    aagatccaagaattgcaagtgtcctg 284
              |||||||||||||||| |||||||||
Sbjct: 115504 aagatccaagaattgccagtgtcctg 115529
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>dbj|AB041811.1| Lycopersicon esculentum LEXYL1 mRNA, complete cds
          Length = 2428

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 399  gttccaatgaatgatatgaacatgag 424
            |||||||||| |||||||||||||||
Sbjct: 1834 gttccaatgactgatatgaacatgag 1859
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>ref|NM_117631.2| Arabidopsis thaliana nucleic acid binding / zinc ion binding
           AT4G15420 mRNA, complete cds
          Length = 1930

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 49  gcgaagccattgaagcagctaaaagagct 77
           |||||||||||||||| ||| ||||||||
Sbjct: 219 gcgaagccattgaagctgctcaaagagct 247
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>gb|AY691332.1| Lycopersicon esculentum MAPKK (LeMKK3) mRNA, complete cds
          Length = 1248

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 48 ggcgaagccattgaagcagct 68
          |||||||||||||||||||||
Sbjct: 29 ggcgaagccattgaagcagct 49
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>ref|NM_183652.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2457

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                         
Query: 336  ttcggagagtacaatccaggaggaaaattgcccatgacttggtac 380
            |||||| | |||||||||||||||| ||||||  |||| ||||||
Sbjct: 1810 ttcggaaaatacaatccaggaggaagattgccgctgacgtggtac 1854
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>gb|AY143927.1| Arabidopsis thaliana At4g15420/dl3755w mRNA, complete cds
          Length = 1686

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 49  gcgaagccattgaagcagctaaaagagct 77
           |||||||||||||||| ||| ||||||||
Sbjct: 122 gcgaagccattgaagctgctcaaagagct 150
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>emb|BX323051.6| Zebrafish DNA sequence from clone DKEYP-12A4, complete sequence
          Length = 31802

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 78    gatattgttgttgtgattgcc 98
             |||||||||||||||||||||
Sbjct: 12473 gatattgttgttgtgattgcc 12493
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>gb|AC090999.1| Caenorhabditis elegans cosmid Y82E9BR, complete sequence
          Length = 139291

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 302   ggaagttggtggacaagttct 322
             |||||||||||||||||||||
Sbjct: 87559 ggaagttggtggacaagttct 87539
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>gb|AF446353.1|AF446353 Arabidopsis thaliana AT4g15420/dl3755w mRNA, complete cds
          Length = 1897

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 49  gcgaagccattgaagcagctaaaagagct 77
           |||||||||||||||| ||| ||||||||
Sbjct: 207 gcgaagccattgaagctgctcaaagagct 235
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>gb|AF315735.1|AF315735 Arabidopsis thaliana PRLI-interacting factor K mRNA, partial cds
          Length = 1880

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 49  gcgaagccattgaagcagctaaaagagct 77
           |||||||||||||||| ||| ||||||||
Sbjct: 161 gcgaagccattgaagctgctcaaagagct 189
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>gb|AY086035.1| Arabidopsis thaliana clone 207652 mRNA, complete sequence
          Length = 1930

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 49  gcgaagccattgaagcagctaaaagagct 77
           |||||||||||||||| ||| ||||||||
Sbjct: 219 gcgaagccattgaagctgctcaaagagct 247
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>dbj|AK105791.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H06, full
           insert sequence
          Length = 1830

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 336 ttcggagagtacaatccaggaggaaaattgcccatgacttggtac 380
           |||||| | |||||||||||||||| ||||||  |||| ||||||
Sbjct: 922 ttcggaaaatacaatccaggaggaagattgccgctgacgtggtac 966
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>emb|Z97338.2|ATFCA3 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 3
          Length = 200252

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 49     gcgaagccattgaagcagctaaaagagct 77
              |||||||||||||||| ||| ||||||||
Sbjct: 188586 gcgaagccattgaagctgctcaaagagct 188614
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>emb|AL161541.2|ATCHRIV41 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 41
          Length = 197419

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 49     gcgaagccattgaagcagctaaaagagct 77
              |||||||||||||||| ||| ||||||||
Sbjct: 142063 gcgaagccattgaagctgctcaaagagct 142091
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>ref|XM_632698.1| Dictyostelium discoideum hypothetical protein (DDB0218799), partial
           mRNA
          Length = 2769

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 261 gatccaagaattgcaagtgt 280
           ||||||||||||||||||||
Sbjct: 832 gatccaagaattgcaagtgt 851
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>emb|AJ965256.1| Dehalococcoides sp. CBDB1 complete genome
          Length = 1395502

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     gaagcagctaaaagagctga 79
              ||||||||||||||||||||
Sbjct: 594857 gaagcagctaaaagagctga 594838
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>gb|AC107721.6| Mus musculus chromosome 5, clone RP23-317I8, complete sequence
          Length = 203227

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 405    atgaatgatatgaacatgag 424
              ||||||||||||||||||||
Sbjct: 111500 atgaatgatatgaacatgag 111519
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>emb|CR450819.7| Zebrafish DNA sequence from clone DKEY-245G2 in linkage group 8,
             complete sequence
          Length = 168244

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 317   agttcttccagaaattcttt 336
             ||||||||||||||||||||
Sbjct: 46091 agttcttccagaaattcttt 46110
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>emb|BX119321.4| Human DNA sequence from clone RP5-908D6 on chromosome 1 Contains the
            5' end of a novel pseudogene and a guanylate binding
            protein pseudogene, complete sequence
          Length = 68235

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 136  gagtgacccttctccttcca 155
            ||||||||||||||||||||
Sbjct: 9321 gagtgacccttctccttcca 9340
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>emb|AL138729.11| Human DNA sequence from clone RP1-172I22 on chromosome 6 Contains a
             mitochondrial transcription factor A (TFAM) pseudogene,
             complete sequence
          Length = 75582

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 401   tccaatgaatgatatgaaca 420
             ||||||||||||||||||||
Sbjct: 49919 tccaatgaatgatatgaaca 49900
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>gb|AE014256.1| Streptococcus agalactiae 2603V/R section 66 of 100 of the complete
            genome
          Length = 29435

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 61   aagcagctaaaagagctgatattg 84
            |||||||||||| |||||||||||
Sbjct: 9491 aagcagctaaaacagctgatattg 9468
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>emb|AL596169.1| Listeria innocua Clip11262 complete genome, segment 7/12
          Length = 239050

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     attgaagcagctaaaagagc 76
              ||||||||||||||||||||
Sbjct: 151309 attgaagcagctaaaagagc 151290
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>emb|CR788314.7| Zebrafish DNA sequence from clone DKEY-205J18 in linkage group 8,
             complete sequence
          Length = 164950

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 317   agttcttccagaaattcttt 336
             ||||||||||||||||||||
Sbjct: 23820 agttcttccagaaattcttt 23839
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>emb|BX470263.9| Zebrafish DNA sequence from clone DKEY-15P9 in linkage group 9,
             complete sequence
          Length = 176022

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    aaaagagctgatattgttgt 88
             ||||||||||||||||||||
Sbjct: 61537 aaaagagctgatattgttgt 61556
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>gb|AC104182.2| Homo sapiens chromosome 3 clone RP11-141G23, complete sequence
          Length = 156818

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    gcaaagatgtatcttgtgac 31
             ||||||||||||||||||||
Sbjct: 28949 gcaaagatgtatcttgtgac 28930
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>ref|XM_623085.1| PREDICTED: Apis mellifera similar to TBP (LOC550692), mRNA
          Length = 1178

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 77  tgatattgttgttgtgattg 96
           ||||||||||||||||||||
Sbjct: 388 tgatattgttgttgtgattg 369
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>gb|AC027281.10| Homo sapiens chromosome 16 clone RP11-424M24, complete sequence
          Length = 221210

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 150    cttccaggcaggcagcagga 169
              ||||||||||||||||||||
Sbjct: 165306 cttccaggcaggcagcagga 165287
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>gb|AC153611.12| Mus musculus 6 BAC RP23-110P14 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 174538

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   ttgtgaatatcattgccagt 191
             ||||||||||||||||||||
Sbjct: 99983 ttgtgaatatcattgccagt 99964
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>gb|AC005411.1|AC005411 Homo sapiens chromosome 17, clone hRPK.721_K_1, complete sequence
          Length = 163908

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 77  tgatattgttgttgtgattg 96
           ||||||||||||||||||||
Sbjct: 597 tgatattgttgttgtgattg 578
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>gb|AC005375.4|AC005375 Homo sapiens chromosome 17, clone hRPK.388_F_14, complete sequence
          Length = 149030

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     tgatattgttgttgtgattg 96
              ||||||||||||||||||||
Sbjct: 147627 tgatattgttgttgtgattg 147608
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>emb|AL355818.13| Human DNA sequence from clone RP4-667C9 on chromosome 1, complete
              sequence
          Length = 101854

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    gagtgacccttctccttcca 155
              ||||||||||||||||||||
Sbjct: 100643 gagtgacccttctccttcca 100624


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,570,846
Number of Sequences: 3902068
Number of extensions: 4570846
Number of successful extensions: 82980
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82868
Number of HSP's gapped (non-prelim): 110
length of query: 544
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 521
effective length of database: 17,143,297,704
effective search space: 8931658103784
effective search space used: 8931658103784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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