ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd1j15 |
|---|---|
| Clone Library Name | barley_pub |
>CHAC_ECOLI (P39163) Cation transport protein chaC| Length = 231 Score = 40.4 bits (93), Expect = 0.002 Identities = 21/50 (42%), Positives = 30/50 (60%) Frame = +3 Query: 27 MARQIATASGPNGYNRDYLFSMEKALSNISHEDDSIIVLADEVRKVLGRS 176 +A IA ASGP G N YLFS+E+ L + +DD + L V+K+L + Sbjct: 171 IAPLIAAASGPLGTNAQYLFSLEQELIKLGMQDDGLNDLLVSVKKLLAEN 220
>VG20_BPT4 (P13334) Structural protein of head (Tail tube protein Gp20)| Length = 524 Score = 32.7 bits (73), Expect = 0.41 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = -3 Query: 209 WYVGAGNLLLCRPAQHLPHLIRKHNDRVVFMAYIGQ 102 WYV GN+ + A+H+ H++ +RVV+ A G+ Sbjct: 285 WYVDTGNMPARKAAEHMQHVMNTMKNRVVYDASTGK 320
>DCE2_HUMAN (Q05329) Glutamate decarboxylase 2 (EC 4.1.1.15) (Glutamate| decarboxylase, 65 kDa isoform) (GAD-65) (65 kDa glutamic acid decarboxylase) Length = 585 Score = 30.4 bits (67), Expect = 2.0 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = +1 Query: 268 FQHSKKSGMAGLAKQMAFSSDHTHS*HSPIERSAVYFGSGT 390 F K+ GMA L + +AF+S+H+ H +++ A G GT Sbjct: 259 FPEVKEKGMAALPRLIAFTSEHS---HFSLKKGAAALGIGT 296
>MRC1_SCHPO (Q9P7T4) Mediator of replication checkpoint protein 1 (DNA| replication checkpoint mediator mrc1) Length = 1019 Score = 30.4 bits (67), Expect = 2.0 Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 5/88 (5%) Frame = +3 Query: 9 EAALEDMARQIATASGPNGYNRDYLFSMEKALSNISHEDDSIIVLADEVRKVLGRSTEKK 188 E +E+ +I ++ GPN +R YL ++ ++ + ++ + VRK++ S +K Sbjct: 883 EEQMEEELSEIFSSGGPNVVDRVYLKKSSTRHTSDNNSLEEVLPIFPGVRKLVSNSQSEK 942 Query: 189 V----TGSDVPLKSH-TPAVHISALPEG 257 + + + KS+ TP + + P+G Sbjct: 943 IGDLSNDNSMGAKSYKTPIISSTQRPQG 970
>YEZ3_YEAST (P32656) Hypothetical 26.3 kDa protein in RAD4-CHD1 intergenic| region Length = 232 Score = 30.4 bits (67), Expect = 2.0 Identities = 12/32 (37%), Positives = 23/32 (71%) Frame = +3 Query: 18 LEDMARQIATASGPNGYNRDYLFSMEKALSNI 113 +++ A+ IA + GP+G N +YL +E+AL+ + Sbjct: 176 VDETAKVIAVSHGPSGSNYEYLAKLEQALAQM 207
>DOCK1_MOUSE (Q8BUR4) Dedicator of cytokinesis protein 1 (180 kDa protein| downstream of CRK) (DOCK180) (Fragments) Length = 1027 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = -1 Query: 352 ENVKSEYGQRKMPS-VSLIQPCRSSCYVETATVPSGRAEMCTAGVCDFNGTSEP 194 E V+ +YG R MPS + + R V + T+PS + A V F+ S P Sbjct: 768 EKVEKQYGVRTMPSGLDDRRGSRPRSMVRSFTMPSSSRPLSVASVSSFSSDSTP 821
>DCE2_RAT (Q05683) Glutamate decarboxylase 2 (EC 4.1.1.15) (Glutamate| decarboxylase, 65 kDa isoform) (GAD-65) (65 kDa glutamic acid decarboxylase) Length = 585 Score = 29.3 bits (64), Expect = 4.5 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = +1 Query: 268 FQHSKKSGMAGLAKQMAFSSDHTHS*HSPIERSAVYFGSGT 390 F K+ GMA + + +AF+S+H+ H +++ A G GT Sbjct: 259 FPEVKEKGMAAVPRLIAFTSEHS---HFSLKKGAAALGIGT 296
>DCE2_PIG (P48321) Glutamate decarboxylase 2 (EC 4.1.1.15) (Glutamate| decarboxylase, 65 kDa isoform) (GAD-65) (65 kDa glutamic acid decarboxylase) Length = 585 Score = 29.3 bits (64), Expect = 4.5 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = +1 Query: 268 FQHSKKSGMAGLAKQMAFSSDHTHS*HSPIERSAVYFGSGT 390 F K+ GMA + + +AF+S+H+ H +++ A G GT Sbjct: 259 FPEVKEKGMAAVPRLIAFTSEHS---HFSLKKGAAALGIGT 296
>DCE2_MOUSE (P48320) Glutamate decarboxylase 2 (EC 4.1.1.15) (Glutamate| decarboxylase, 65 kDa isoform) (GAD-65) (65 kDa glutamic acid decarboxylase) Length = 585 Score = 29.3 bits (64), Expect = 4.5 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = +1 Query: 268 FQHSKKSGMAGLAKQMAFSSDHTHS*HSPIERSAVYFGSGT 390 F K+ GMA + + +AF+S+H+ H +++ A G GT Sbjct: 259 FPEVKEKGMAAVPRLIAFTSEHS---HFSLKKGAAALGIGT 296
>DCE2_CANFA (Q4PRC2) Glutamate decarboxylase 2 (EC 4.1.1.15) (Glutamate| decarboxylase, 65 kDa isoform) (GAD-65) (65 kDa glutamic acid decarboxylase) Length = 585 Score = 29.3 bits (64), Expect = 4.5 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = +1 Query: 268 FQHSKKSGMAGLAKQMAFSSDHTHS*HSPIERSAVYFGSGT 390 F K+ GMA + + +AF+S+H+ H +++ A G GT Sbjct: 259 FPEVKEKGMAAVPRLIAFTSEHS---HFSLKKGAAALGIGT 296
>VATI1_TREPA (O83444) V-type ATP synthase subunit I 1 (EC 3.6.3.14) (V-type| ATPase subunit I 1) Length = 622 Score = 29.3 bits (64), Expect = 4.5 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = -3 Query: 170 AQHLPHLIRKHNDRVVFMAYIGQCLLH*EQVVP 72 A+ + ++R H+DRV I QC+ H E+ P Sbjct: 83 AEAVEQIVRTHSDRVELAQRIAQCIAHLERCEP 115
>PGK_HELHP (Q7VJB6) Phosphoglycerate kinase (EC 2.7.2.3)| Length = 402 Score = 28.9 bits (63), Expect = 5.9 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 9/71 (12%) Frame = +3 Query: 84 FSMEKALSNISHEDDSIIVLADEVRKVLGRSTEKK---------VTGSDVPLKSHTPAVH 236 F M+K+L EDD L E RK+L ++ EKK V+ D+ H Sbjct: 240 FDMQKSLV----EDD----LVSEARKILDKAKEKKVKIYLPVDVVSTDDIKEHRHIKITP 291 Query: 237 ISALPEGTVAV 269 +PEG +AV Sbjct: 292 AQDIPEGFMAV 302
>TRMD_CHLPN (Q9Z964) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)| (M1G-methyltransferase) (tRNA [GM37] methyltransferase) Length = 361 Score = 28.5 bits (62), Expect = 7.7 Identities = 17/57 (29%), Positives = 26/57 (45%) Frame = -3 Query: 266 RDGALGKSRDVHSWSMRF*WYVGAGNLLLCRPAQHLPHLIRKHNDRVVFMAYIGQCL 96 RD LGK + V + G G LL+ P +RK N +V++++ G L Sbjct: 39 RDFGLGKWKQVDDTP-----FSGGGMLLMAEPVTSAIRSVRKENSKVIYLSPQGALL 90
>COAE_TREPA (O83319) Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A| kinase) Length = 211 Score = 28.5 bits (62), Expect = 7.7 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = +1 Query: 121 KTTRSLCLRMR*GRCWAGRQRRR-LPAPTYH*NRILQLCTSLLFPRAPS 264 K TR LC + R A R + L APT H +LQ C+ +L+ APS Sbjct: 98 KVTRLLCEDI--ARAQAARPKAIVLNAPTLHKTELLQACSFVLYIWAPS 144 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,224,988 Number of Sequences: 219361 Number of extensions: 1334322 Number of successful extensions: 3246 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3191 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3245 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
