ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd1j13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y493_AQUAE (O66783) Hypothetical protein aq_493 32 0.55
2FA8_HUMAN (P00451) Coagulation factor VIII precursor (Procoagula... 30 2.1
3PDXS_METMA (Q8PUA5) Pyridoxal biosynthesis lyase pdxS (EC 4.-.-.-) 30 2.7
4PDXS_METAC (Q8TQH6) Pyridoxal biosynthesis lyase pdxS (EC 4.-.-.-) 30 2.7
5SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (S... 29 6.0

>Y493_AQUAE (O66783) Hypothetical protein aq_493|
          Length = 322

 Score = 32.3 bits (72), Expect = 0.55
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +1

Query: 7   VHQGVPSLGNQGKSENGRAPWEGVRGRCRKEW---GIFQARLADAEKKYYL 150
           V+QGV +LG  GK       + G+RG   +E    GI   RL     KYYL
Sbjct: 125 VNQGVKALGKAGKVVEKTQLYIGLRGELYREGDSKGILSVRLVPDRDKYYL 175



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>FA8_HUMAN (P00451) Coagulation factor VIII precursor (Procoagulant component)|
            (Antihemophilic factor) (AHF) [Contains: Factor VIIIa
            heavy chain, 200 kDa isoform; Factor VIIIa heavy chain,
            92 kDa isoform; Factor VIII B chain; Factor VIIIa light
            chain]
          Length = 2351

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
 Frame = +3

Query: 108  IPGKAGRCREEVLLGSRHHAAEFDFSLEVITRRAGTMLGFCSGNL---ALTCSALLMNSS 278
            +P KAG  R E L+G   HA      L V + +  T LG  SG++    +T S      +
Sbjct: 2008 LPSKAGIWRVECLIGEHLHAGMSTLFL-VYSNKCQTPLGMASGHIRDFQITASGQYGQWA 2066

Query: 279  CLLV*LKLPGQICTWVT 329
              L  L   G I  W T
Sbjct: 2067 PKLARLHYSGSINAWST 2083



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>PDXS_METMA (Q8PUA5) Pyridoxal biosynthesis lyase pdxS (EC 4.-.-.-)|
          Length = 301

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +3

Query: 102 GDIPGKAGRCREEVLLGSRHHAAEFDFSLEVITRRAGTMLGFCSGNLALTCSALLM 269
           G+I   AG+ +EE+++ +R   A  +  +E    +   ++ F +G +A    A LM
Sbjct: 176 GEIRALAGKTKEELIMVAREIEAPIELVVETAKMQRLPVVNFAAGGVATPADAALM 231



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>PDXS_METAC (Q8TQH6) Pyridoxal biosynthesis lyase pdxS (EC 4.-.-.-)|
          Length = 301

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +3

Query: 102 GDIPGKAGRCREEVLLGSRHHAAEFDFSLEVITRRAGTMLGFCSGNLALTCSALLM 269
           G+I   AG+ +EE+++ +R   A  +  +E    +   ++ F +G +A    A LM
Sbjct: 176 GEIRALAGKTKEELIMVAREIEAPIELVVETAKMQRLPVVNFAAGGVATPADAALM 231



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>SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2)
          Length = 659

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = +2

Query: 41  ASRRTEEHHGKG*EDGVEKNGGYSRQGWPMPRRSITWIKASRRRIRLQSRSNYTARRN 214
           ASR +             + GGY R G     RS +W + SR R R  SRS    RR+
Sbjct: 371 ASRTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSRSWSR-SRSRSRRYSRSRSRGRRH 427


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,518,733
Number of Sequences: 219361
Number of extensions: 1294011
Number of successful extensions: 2976
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2975
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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