ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd1j13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016843.1| Zea mays clone Contig676 mRNA sequence 172 6e-40
2gb|BT018254.1| Zea mays clone EL01T0201D03.c mRNA sequence 157 4e-35
3gb|AY104430.1| Zea mays PCO074111 mRNA sequence 151 2e-33
4ref|XM_465088.1| Oryza sativa (japonica cultivar-group), mRNA 137 3e-29
5ref|XM_507466.1| PREDICTED Oryza sativa (japonica cultivar-group... 137 3e-29
6ref|XM_506776.2| PREDICTED Oryza sativa (japonica cultivar-group... 137 3e-29
7dbj|AK122023.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 3e-29
8dbj|AK101533.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 3e-29
9dbj|AK064947.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 3e-29
10ref|XM_463604.1| Oryza sativa (japonica cultivar-group), predic... 94 5e-16
11gb|AY110295.1| Zea mays CL12023_1 mRNA sequence 86 1e-13
12dbj|AK065445.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
14dbj|AP004123.3| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
15gb|AC129716.3| Oryza sativa (japonica cultivar-group) chromosome... 60 6e-06
16gb|AF532975.1| Oryza sativa (indica cultivar-group) IR24 chromos... 60 6e-06
17gb|AC079022.2|AC079022 Oryza sativa chromosome 5 clone P0574H01,... 60 6e-06
18dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
19ref|NM_189455.1| Oryza sativa (japonica cultivar-group), predic... 58 3e-05
20dbj|AK101766.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
21dbj|AK064075.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
22dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.025
23dbj|AP003416.4| Oryza sativa (japonica cultivar-group) genomic D... 48 0.025
24dbj|AP003436.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.025
25dbj|AB088123.1| Oryza glumipatula DNA, retroposon p-SINE1-r803, ... 48 0.025
26gb|AC163678.3| Mus musculus BAC clone RP24-104D14 from chromosom... 42 1.5
27gb|AC101690.7| Mus musculus chromosome 7, clone RP23-218E6, comp... 42 1.5
28gb|CP000249.1| Frankia sp. CcI3, complete genome 42 1.5
29ref|NM_147241.1| Arabidopsis thaliana unknown protein AT2G04235 ... 40 6.0
30gb|AC157088.2| Pan troglodytes BAC clone CH251-497H13 from chrom... 40 6.0
31gb|AC092265.3| Homo sapiens chromosome 1 clone RP4-656G21, compl... 40 6.0
32gb|AC108416.5| Mus musculus chromosome 14, clone RP23-114J12, co... 40 6.0
33gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 6.0
34emb|AL078461.38|HSDJ901O8 Human DNA sequence from clone RP5-901O... 40 6.0
35gb|AF023889.1| HIV-2 100 isolate from Guinea-Bissau, envelope gl... 40 6.0
36gb|AC011463.7| Homo sapiens chromosome 19 clone CTC-442E9, compl... 40 6.0
37gb|AC007213.6| Arabidopsis thaliana chromosome 2 clone T23O15 ma... 40 6.0
38dbj|AK005673.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 6.0
39emb|AJ008308.1|HIV8308 Human immunodeficiency virus type 2 parti... 40 6.0
40gb|AY106420.1| Zea mays PCO107075 mRNA sequence 40 6.0
41gb|AC007759.1|AC007759 Homo sapiens chromosome 19, cosmid R27714... 40 6.0 
>gb|BT016843.1| Zea mays clone Contig676 mRNA sequence
          Length = 941

 Score =  172 bits (87), Expect = 6e-40
 Identities = 153/175 (87%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggattgttcatcagggtgttccatcacttggtaaccagggcaagtcggagaacggaagag 61
           ||||||||||||| |  ||||| |||||||| |||||||||||||| || || |||||||
Sbjct: 539 ggattgttcatcaagcagttccttcacttgggaaccagggcaagtcagataatggaagag 480

                                                                       
Query: 62  caccatgggaaggggtaagaggacggtgtagaaaagaatgggggatattccaggcaaggc 121
           ||||||||||||||||||||| ||| || |||||||||||||||||||| ||| ||||||
Sbjct: 479 caccatgggaaggggtaagagcacgctgcagaaaagaatgggggatatttcagacaaggc 420

                                                                  
Query: 122 tggccgatgccgagaagaagtattacttggatcaaggcatcacgccgccgaattc 176
           |||| ||||| ||||||   |||||||||||   |||||||||||| ||||||||
Sbjct: 419 tggctgatgcagagaaggcttattacttggagagaggcatcacgcccccgaattc 365
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>gb|BT018254.1| Zea mays clone EL01T0201D03.c mRNA sequence
          Length = 780

 Score =  157 bits (79), Expect = 4e-35
 Identities = 151/175 (86%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggattgttcatcagggtgttccatcacttggtaaccagggcaagtcggagaacggaagag 61
           ||||||||||||| |  ||||| |||||||| |||||||||||||| || || |||||||
Sbjct: 326 ggattgttcatcaagcagttccttcacttgggaaccagggcaagtcagataatggaagag 385

                                                                       
Query: 62  caccatgggaaggggtaagaggacggtgtagaaaagaatgggggatattccaggcaaggc 121
           | ||||||||||||||||||| ||  || |||||||||||||||||||| ||| ||||||
Sbjct: 386 ccccatgggaaggggtaagagcactctgcagaaaagaatgggggatatttcagacaaggc 445

                                                                  
Query: 122 tggccgatgccgagaagaagtattacttggatcaaggcatcacgccgccgaattc 176
           |||| ||||| ||||||   |||||||||||   |||||||||||| ||||||||
Sbjct: 446 tggctgatgcagagaaggcttattacttggagagaggcatcacgcccccgaattc 500
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>gb|AY104430.1| Zea mays PCO074111 mRNA sequence
          Length = 537

 Score =  151 bits (76), Expect = 2e-33
 Identities = 148/172 (86%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggattgttcatcagggtgttccatcacttggtaaccagggcaagtcggagaacggaagag 61
           |||||||||||||    ||||| |||||||| |||||||||||||| || || |||||| 
Sbjct: 358 ggattgttcatcaatcagttccttcacttggcaaccagggcaagtcagataatggaagac 417

                                                                       
Query: 62  caccatgggaaggggtaagaggacggtgtagaaaagaatgggggatattccaggcaaggc 121
           ||||||||||||||||||||| ||| || |||||||||||||||||||| ||| ||||||
Sbjct: 418 caccatgggaaggggtaagagcacgctgcagaaaagaatgggggatatttcagacaaggc 477

                                                               
Query: 122 tggccgatgccgagaagaagtattacttggatcaaggcatcacgccgccgaa 173
           |||| ||||| ||||||   ||||||||||| | ||||||||| || |||||
Sbjct: 478 tggctgatgcggagaaggcttattacttggagcgaggcatcacacccccgaa 529
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>ref|XM_465088.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1925

 Score =  137 bits (69), Expect = 3e-29
 Identities = 120/137 (87%)
 Strand = Plus / Plus

                                                                        
Query: 2    ggattgttcatcagggtgttccatcacttggtaaccagggcaagtcggagaacggaagag 61
            ||||||||||||| | ||| ||||||||||| |||||||||||  | ||||| |||| ||
Sbjct: 1364 ggattgttcatcaagctgtgccatcacttggaaaccagggcaacgcagagaatggaaaag 1423

                                                                        
Query: 62   caccatgggaaggggtaagaggacggtgtagaaaagaatgggggatattccaggcaaggc 121
            ||||||||||||||||||||| ||| ||||| |||||||||| |||||| ||  | ||||
Sbjct: 1424 caccatgggaaggggtaagagcacgctgtaggaaagaatgggagatatttcaaacgaggc 1483

                             
Query: 122  tggccgatgccgagaag 138
            |||||||||||||||||
Sbjct: 1484 tggccgatgccgagaag 1500
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>ref|XM_507466.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1654_A02.17 mRNA
          Length = 2008

 Score =  137 bits (69), Expect = 3e-29
 Identities = 120/137 (87%)
 Strand = Plus / Plus

                                                                        
Query: 2    ggattgttcatcagggtgttccatcacttggtaaccagggcaagtcggagaacggaagag 61
            ||||||||||||| | ||| ||||||||||| |||||||||||  | ||||| |||| ||
Sbjct: 1401 ggattgttcatcaagctgtgccatcacttggaaaccagggcaacgcagagaatggaaaag 1460

                                                                        
Query: 62   caccatgggaaggggtaagaggacggtgtagaaaagaatgggggatattccaggcaaggc 121
            ||||||||||||||||||||| ||| ||||| |||||||||| |||||| ||  | ||||
Sbjct: 1461 caccatgggaaggggtaagagcacgctgtaggaaagaatgggagatatttcaaacgaggc 1520

                             
Query: 122  tggccgatgccgagaag 138
            |||||||||||||||||
Sbjct: 1521 tggccgatgccgagaag 1537
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>ref|XM_506776.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1654_A02.17 mRNA
          Length = 2061

 Score =  137 bits (69), Expect = 3e-29
 Identities = 120/137 (87%)
 Strand = Plus / Plus

                                                                        
Query: 2    ggattgttcatcagggtgttccatcacttggtaaccagggcaagtcggagaacggaagag 61
            ||||||||||||| | ||| ||||||||||| |||||||||||  | ||||| |||| ||
Sbjct: 1421 ggattgttcatcaagctgtgccatcacttggaaaccagggcaacgcagagaatggaaaag 1480

                                                                        
Query: 62   caccatgggaaggggtaagaggacggtgtagaaaagaatgggggatattccaggcaaggc 121
            ||||||||||||||||||||| ||| ||||| |||||||||| |||||| ||  | ||||
Sbjct: 1481 caccatgggaaggggtaagagcacgctgtaggaaagaatgggagatatttcaaacgaggc 1540

                             
Query: 122  tggccgatgccgagaag 138
            |||||||||||||||||
Sbjct: 1541 tggccgatgccgagaag 1557
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>dbj|AK122023.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111P12, full
            insert sequence
          Length = 2060

 Score =  137 bits (69), Expect = 3e-29
 Identities = 120/137 (87%)
 Strand = Plus / Plus

                                                                        
Query: 2    ggattgttcatcagggtgttccatcacttggtaaccagggcaagtcggagaacggaagag 61
            ||||||||||||| | ||| ||||||||||| |||||||||||  | ||||| |||| ||
Sbjct: 1420 ggattgttcatcaagctgtgccatcacttggaaaccagggcaacgcagagaatggaaaag 1479

                                                                        
Query: 62   caccatgggaaggggtaagaggacggtgtagaaaagaatgggggatattccaggcaaggc 121
            ||||||||||||||||||||| ||| ||||| |||||||||| |||||| ||  | ||||
Sbjct: 1480 caccatgggaaggggtaagagcacgctgtaggaaagaatgggagatatttcaaacgaggc 1539

                             
Query: 122  tggccgatgccgagaag 138
            |||||||||||||||||
Sbjct: 1540 tggccgatgccgagaag 1556
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>dbj|AK101533.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048C01, full
            insert sequence
          Length = 1924

 Score =  137 bits (69), Expect = 3e-29
 Identities = 120/137 (87%)
 Strand = Plus / Plus

                                                                        
Query: 2    ggattgttcatcagggtgttccatcacttggtaaccagggcaagtcggagaacggaagag 61
            ||||||||||||| | ||| ||||||||||| |||||||||||  | ||||| |||| ||
Sbjct: 1363 ggattgttcatcaagctgtgccatcacttggaaaccagggcaacgcagagaatggaaaag 1422

                                                                        
Query: 62   caccatgggaaggggtaagaggacggtgtagaaaagaatgggggatattccaggcaaggc 121
            ||||||||||||||||||||| ||| ||||| |||||||||| |||||| ||  | ||||
Sbjct: 1423 caccatgggaaggggtaagagcacgctgtaggaaagaatgggagatatttcaaacgaggc 1482

                             
Query: 122  tggccgatgccgagaag 138
            |||||||||||||||||
Sbjct: 1483 tggccgatgccgagaag 1499
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>dbj|AK064947.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000P17, full
            insert sequence
          Length = 2008

 Score =  137 bits (69), Expect = 3e-29
 Identities = 120/137 (87%)
 Strand = Plus / Plus

                                                                        
Query: 2    ggattgttcatcagggtgttccatcacttggtaaccagggcaagtcggagaacggaagag 61
            ||||||||||||| | ||| ||||||||||| |||||||||||  | ||||| |||| ||
Sbjct: 1401 ggattgttcatcaagctgtgccatcacttggaaaccagggcaacgcagagaatggaaaag 1460

                                                                        
Query: 62   caccatgggaaggggtaagaggacggtgtagaaaagaatgggggatattccaggcaaggc 121
            ||||||||||||||||||||| ||| ||||| |||||||||| |||||| ||  | ||||
Sbjct: 1461 caccatgggaaggggtaagagcacgctgtaggaaagaatgggagatatttcaaacgaggc 1520

                             
Query: 122  tggccgatgccgagaag 138
            |||||||||||||||||
Sbjct: 1521 tggccgatgccgagaag 1537
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>ref|XM_463604.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1197

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 110/131 (83%)
 Strand = Plus / Plus

                                                                        
Query: 8    ttcatcagggtgttccatcacttggtaaccagggcaagtcggagaacggaagagcaccat 67
            ||||||||| | |||| ||||| || |||||||||| | | ||||| |||||| ||||||
Sbjct: 1028 ttcatcaggttattccgtcactggggaaccagggcacggctgagaatggaagaacaccat 1087

                                                                        
Query: 68   gggaaggggtaagaggacggtgtagaaaagaatgggggatattccaggcaaggctggccg 127
            |||||||||| ||||  || |||||||||||||||||||| |||||   |||| |||| |
Sbjct: 1088 gggaaggggtgagagctcgctgtagaaaagaatgggggatgttccaaaaaaggttggctg 1147

                       
Query: 128  atgccgagaag 138
            |||| ||||||
Sbjct: 1148 atgctgagaag 1158
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>gb|AY110295.1| Zea mays CL12023_1 mRNA sequence
          Length = 996

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 75/86 (87%)
 Strand = Plus / Minus

                                                                       
Query: 28  cttggtaaccagggcaagtcggagaacggaagagcaccatgggaaggggtaagaggacgg 87
           |||||||||||||||||| | ||||| |||| |||||||||||||||||| |||| ||| 
Sbjct: 507 cttggtaaccagggcaaggcagagaatggaaaagcaccatgggaaggggttagagcacgc 448

                                     
Query: 88  tgtagaaaagaatgggggatattcca 113
           ||| | ||||||| |||||| |||||
Sbjct: 447 tgtcgtaaagaatnggggatgttcca 422
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>dbj|AK065445.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002L22, full
            insert sequence
          Length = 1936

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 88/106 (83%)
 Strand = Plus / Plus

                                                                        
Query: 2    ggattgttcatcagggtgttccatcacttggtaaccagggcaagtcggagaacggaagag 61
            |||||||||| || |  |||||||| || || |||||||||||||| ||||| |||||| 
Sbjct: 1482 ggattgttcaccaagtggttccatctctcgggaaccagggcaagtcagagaatggaagac 1541

                                                          
Query: 62   caccatgggaaggggtaagaggacggtgtagaaaagaatgggggat 107
            || ||||||||||||| || |  ||||| || || |||||||||||
Sbjct: 1542 cagcatgggaaggggtgagggcgcggtgcaggaaggaatgggggat 1587
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                            
Query: 75       ggtaagaggacggtgtagaaaagaatgggggatattccaggcaaggctggccgatgccga 134
                |||||||| ||| ||||| |||||||||| |||||| ||  | |||||||||||||||||
Sbjct: 11402574 ggtaagagcacgctgtaggaaagaatgggagatatttcaaacgaggctggccgatgccga 11402633

                    
Query: 135      gaag 138
                ||||
Sbjct: 11402634 gaag 11402637



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                                
Query: 49       gagaacggaagagcaccatgggaaggggtaag 80
                ||||| |||| |||||||||||||||||||||
Sbjct: 11402434 gagaatggaaaagcaccatgggaaggggtaag 11402465



 Score = 46.1 bits (23), Expect = 0.097
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                       
Query: 2        ggattgttcatcagggtgttccatcacttggtaaccagg 40
                ||||||||||||| | ||| ||||||||||| |||||||
Sbjct: 11402298 ggattgttcatcaagctgtgccatcacttggaaaccagg 11402336
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>dbj|AP004123.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1654_A02
          Length = 128520

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                         
Query: 75    ggtaagaggacggtgtagaaaagaatgggggatattccaggcaaggctggccgatgccga 134
             |||||||| ||| ||||| |||||||||| |||||| ||  | |||||||||||||||||
Sbjct: 72046 ggtaagagcacgctgtaggaaagaatgggagatatttcaaacgaggctggccgatgccga 72105

                 
Query: 135   gaag 138
             ||||
Sbjct: 72106 gaag 72109



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 49    gagaacggaagagcaccatgggaaggggtaag 80
             ||||| |||| |||||||||||||||||||||
Sbjct: 71906 gagaatggaaaagcaccatgggaaggggtaag 71937



 Score = 46.1 bits (23), Expect = 0.097
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 2     ggattgttcatcagggtgttccatcacttggtaaccagg 40
             ||||||||||||| | ||| ||||||||||| |||||||
Sbjct: 71770 ggattgttcatcaagctgtgccatcacttggaaaccagg 71808
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>gb|AC129716.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0068N01, complete sequence
          Length = 152233

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                           
Query: 37    cagggcaagtcggagaacggaagagcaccatgggaaggggtaagag 82
             ||||||||||| ||||| |||||| || ||||||||||||||||||
Sbjct: 84799 cagggcaagtcagagaatggaagaccagcatgggaaggggtaagag 84754
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>gb|AF532975.1| Oryza sativa (indica cultivar-group) IR24 chromosome 5 BAC, complete
             sequence
          Length = 86190

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                           
Query: 37    cagggcaagtcggagaacggaagagcaccatgggaaggggtaagag 82
             ||||||||||| ||||| |||||| || ||||||||||||||||||
Sbjct: 84214 cagggcaagtcagagaatggaagaccagcatgggaaggggtaagag 84169
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>gb|AC079022.2|AC079022 Oryza sativa chromosome 5 clone P0574H01, complete sequence
          Length = 151589

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                           
Query: 37    cagggcaagtcggagaacggaagagcaccatgggaaggggtaagag 82
             ||||||||||| ||||| |||||| || ||||||||||||||||||
Sbjct: 22950 cagggcaagtcagagaatggaagaccagcatgggaaggggtaagag 22905
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                            
Query: 37     cagggcaagtcggagaacggaagagcaccatgggaaggggtaagag 82
              ||||||||||| ||||| |||||| || ||||||||||||||||||
Sbjct: 423152 cagggcaagtcagagaatggaagaccagcatgggaaggggtaagag 423107
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>ref|NM_189455.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1536

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 92/113 (81%)
 Strand = Plus / Plus

                                                                        
Query: 2    ggattgttcatcagggtgttccatcacttggtaaccagggcaagtcggagaacggaagag 61
            ||||||| ||||| |  ||||| || ||||| ||||||||  |||| ||| |||| || |
Sbjct: 1346 ggattgtacatcaagtggttccttctcttgggaaccaggggcagtcagagcacgggaggg 1405

                                                                 
Query: 62   caccatgggaaggggtaagaggacggtgtagaaaagaatgggggatattccag 114
            |||| |||||||||||||| | ||| ||| | ||||||||||| || ||||||
Sbjct: 1406 caccgtgggaaggggtaagggaacgttgtcggaaagaatggggaattttccag 1458
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>dbj|AK101766.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033064F20, full
            insert sequence
          Length = 1800

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 92/113 (81%)
 Strand = Plus / Plus

                                                                        
Query: 2    ggattgttcatcagggtgttccatcacttggtaaccagggcaagtcggagaacggaagag 61
            ||||||| ||||| |  ||||| || ||||| ||||||||  |||| ||| |||| || |
Sbjct: 1437 ggattgtacatcaagtggttccttctcttgggaaccaggggcagtcagagcacgggaggg 1496

                                                                 
Query: 62   caccatgggaaggggtaagaggacggtgtagaaaagaatgggggatattccag 114
            |||| |||||||||||||| | ||| ||| | ||||||||||| || ||||||
Sbjct: 1497 caccgtgggaaggggtaagggaacgttgtcggaaagaatggggaattttccag 1549
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>dbj|AK064075.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-H12, full
           insert sequence
          Length = 650

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 92/113 (81%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggattgttcatcagggtgttccatcacttggtaaccagggcaagtcggagaacggaagag 61
           ||||||| ||||| |  ||||| || ||||| ||||||||  |||| ||| |||| || |
Sbjct: 156 ggattgtacatcaagtggttccttctcttgggaaccaggggcagtcagagcacgggaggg 215

                                                                
Query: 62  caccatgggaaggggtaagaggacggtgtagaaaagaatgggggatattccag 114
           |||| |||||||||||||| | ||| ||| | ||||||||||| || ||||||
Sbjct: 216 caccgtgggaaggggtaagggaacgttgtcggaaagaatggggaattttccag 268
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                                
Query: 49       gagaacggaagagcaccatgggaaggggtaag 80
                ||||| |||||| |||||||||||||||||||
Sbjct: 39663066 gagaatggaagaacaccatgggaaggggtaag 39663097



 Score = 46.1 bits (23), Expect = 0.097
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                   
Query: 88       tgtagaaaagaatgggggatattccaggcaaggctggccgatgccgagaag 138
                |||||||||||||||||||| |||||   |||| |||| ||||| ||||||
Sbjct: 39663502 tgtagaaaagaatgggggatgttccaaaaaaggttggctgatgctgagaag 39663552
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>dbj|AP003416.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0456E05
          Length = 173699

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                              
Query: 49     gagaacggaagagcaccatgggaaggggtaag 80
              ||||| |||||| |||||||||||||||||||
Sbjct: 144022 gagaatggaagaacaccatgggaaggggtaag 144053



 Score = 46.1 bits (23), Expect = 0.097
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                 
Query: 88     tgtagaaaagaatgggggatattccaggcaaggctggccgatgccgagaag 138
              |||||||||||||||||||| |||||   |||| |||| ||||| ||||||
Sbjct: 144458 tgtagaaaagaatgggggatgttccaaaaaaggttggctgatgctgagaag 144508
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>dbj|AP003436.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0470A12
          Length = 185095

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 49    gagaacggaagagcaccatgggaaggggtaag 80
             ||||| |||||| |||||||||||||||||||
Sbjct: 13965 gagaatggaagaacaccatgggaaggggtaag 13996



 Score = 46.1 bits (23), Expect = 0.097
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                
Query: 88    tgtagaaaagaatgggggatattccaggcaaggctggccgatgccgagaag 138
             |||||||||||||||||||| |||||   |||| |||| ||||| ||||||
Sbjct: 14401 tgtagaaaagaatgggggatgttccaaaaaaggttggctgatgctgagaag 14451
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>dbj|AB088123.1| Oryza glumipatula DNA, retroposon p-SINE1-r803, repeat sequence
          Length = 295

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                               
Query: 88  tgtagaaaagaatgggggatattccaggcaaggctggccgatgccgagaaga 139
           |||||||||||||||||||| |||||   |||| |||| ||||| |||||||
Sbjct: 244 tgtagaaaagaatgggggatgttccaaaaaaggttggctgatgctgagaaga 295
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>gb|AC163678.3| Mus musculus BAC clone RP24-104D14 from chromosome 10, complete sequence
          Length = 196603

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 63     accatgggaaggggtaagagg 83
              |||||||||||||||||||||
Sbjct: 158263 accatgggaaggggtaagagg 158283
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>gb|AC101690.7| Mus musculus chromosome 7, clone RP23-218E6, complete sequence
          Length = 229964

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 294    ctgaagctcccgggccagatc 314
              |||||||||||||||||||||
Sbjct: 191922 ctgaagctcccgggccagatc 191942
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 164    cgccgccgaattcgacttcag 184
              |||||||||||||||||||||
Sbjct: 154820 cgccgccgaattcgacttcag 154800
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>ref|NM_147241.1| Arabidopsis thaliana unknown protein AT2G04235 mRNA, complete cds
          Length = 3681

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 10   catcagggtgttccatcact 29
            ||||||||||||||||||||
Sbjct: 2464 catcagggtgttccatcact 2445
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>gb|AC157088.2| Pan troglodytes BAC clone CH251-497H13 from chromosome unknown,
             complete sequence
          Length = 220527

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 381   taataatcagacttgtgtac 400
             ||||||||||||||||||||
Sbjct: 58473 taataatcagacttgtgtac 58492
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>gb|AC092265.3| Homo sapiens chromosome 1 clone RP4-656G21, complete sequence
          Length = 129231

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 58     agagcaccatgggaaggggt 77
              ||||||||||||||||||||
Sbjct: 124634 agagcaccatgggaaggggt 124653
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>gb|AC108416.5| Mus musculus chromosome 14, clone RP23-114J12, complete sequence
          Length = 227555

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 52    aacggaagagcaccatgggaaggg 75
             |||| |||||||||||||||||||
Sbjct: 92096 aacgaaagagcaccatgggaaggg 92119
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 144     ttacttggatcaaggcatca 163
               ||||||||||||||||||||
Sbjct: 3737429 ttacttggatcaaggcatca 3737448
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>emb|AL078461.38|HSDJ901O8 Human DNA sequence from clone RP5-901O8 on chromosome 20q11.1-11.23
             Contains part of the C20orf104 gene, the COX7BP2 gene for
             cytochrome c oxidase VIIb subunit pseudogene 2 and a
             hypoxia inducible protein 1 (HIG1) pseudogene, complete
             sequence
          Length = 99876

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 381   taataatcagacttgtgtac 400
             ||||||||||||||||||||
Sbjct: 71516 taataatcagacttgtgtac 71497
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>gb|AF023889.1| HIV-2 100 isolate from Guinea-Bissau, envelope glycoprotein V3
           region (env) gene, partial cds
          Length = 233

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 415 ttgtaccgataacacttatg 434
           ||||||||||||||||||||
Sbjct: 70  ttgtaccgataacacttatg 89
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>gb|AC011463.7| Homo sapiens chromosome 19 clone CTC-442E9, complete sequence
          Length = 101944

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   tgcctactagtatagctgaa 298
             ||||||||||||||||||||
Sbjct: 66212 tgcctactagtatagctgaa 66231
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>gb|AC007213.6| Arabidopsis thaliana chromosome 2 clone T23O15 map RNS1, complete
             sequence
          Length = 81341

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    catcagggtgttccatcact 29
             ||||||||||||||||||||
Sbjct: 72975 catcagggtgttccatcact 72994
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>dbj|AK005673.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:1700006H01 product:RIKEN cDNA 1700006H01
           gene, full insert sequence
          Length = 1024

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 52  aacggaagagcaccatgggaaggg 75
           |||| |||||||||||||||||||
Sbjct: 792 aacgaaagagcaccatgggaaggg 769
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>emb|AJ008308.1|HIV8308 Human immunodeficiency virus type 2 partial env gene, isolate b1236
          Length = 353

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 415 ttgtaccgataacacttatg 434
           ||||||||||||||||||||
Sbjct: 134 ttgtaccgataacacttatg 153
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>gb|AY106420.1| Zea mays PCO107075 mRNA sequence
          Length = 804

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 77/96 (80%)
 Strand = Plus / Plus

                                                                       
Query: 52  aacggaagagcaccatgggaaggggtaagaggacggtgtagaaaagaatgggggatattc 111
           |||||||| || |||||||||||||| || |  ||||| || || |||||||| || |||
Sbjct: 503 aacggaagggcgccatgggaaggggtgagggcgcggtgcaggaaggaatggggcatgttc 562

                                               
Query: 112 caggcaaggctggccgatgccgagaagaagtattac 147
           ||| | ||| |||| || || ||||||  |||||||
Sbjct: 563 cagaccaggatggcggaggcggagaaggcgtattac 598
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>gb|AC007759.1|AC007759 Homo sapiens chromosome 19, cosmid R27714, complete sequence
          Length = 40331

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 364   cagagtgaggcgcatgctaataatcaga 391
             |||| ||||| |||||||||||||||||
Sbjct: 17105 cagattgaggggcatgctaataatcaga 17132


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,118,472
Number of Sequences: 3902068
Number of extensions: 3118472
Number of successful extensions: 56251
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56098
Number of HSP's gapped (non-prelim): 153
length of query: 447
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 425
effective length of database: 17,147,199,772
effective search space: 7287559903100
effective search space used: 7287559903100
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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