ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd1i18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK067475.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 2e-37
2ref|XM_473416.1| Oryza sativa (japonica cultivar-group), predic... 147 5e-32
3emb|AL663000.4|OSJN00201 Oryza sativa genomic DNA, chromosome 4,... 80 9e-12
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 80 9e-12
5emb|AL139002.18| Human DNA sequence from clone RP11-318G21 on ch... 44 0.50
6gb|AC104867.18| Mus musculus chromosome 18, clone RP24-320L19, c... 44 0.50
7ref|XM_719751.1| Plasmodium yoelii yoelii str. 17XNL glutamic ac... 42 2.0
8ref|XM_671829.1| Plasmodium berghei strain ANKA hypothetical pro... 42 2.0
9gb|AC115786.8| Mus musculus chromosome 5, clone RP23-170E15, com... 40 7.9
10gb|AC125113.3| Mus musculus BAC clone RP24-251K23 from chromosom... 40 7.9
11gb|AC164874.3| Culex pipiens quinquefasciatus, clone Culex pipie... 40 7.9
12gb|AC115760.9| Mus musculus chromosome 14, clone RP23-62M14, com... 40 7.9
13gb|AC129318.4| Mus musculus BAC clone RP23-464B17 from chromosom... 40 7.9
14gb|AC127376.3| Mus musculus BAC clone RP23-49A4 from chromosome ... 40 7.9
15gb|AC124524.3| Mus musculus BAC clone RP23-402C9 from chromosome... 40 7.9
16gb|AC125329.4| Mus musculus BAC clone RP23-198F7 from 10, comple... 40 7.9
17gb|AC115119.5| Mus musculus BAC clone RP23-87M19 from 18, comple... 40 7.9
18ref|XM_759706.1| Theileria parva strain Muguga hypothetical prot... 40 7.9
19gb|AC091766.2| Homo sapiens BAC clone RP11-393L14 from 7, comple... 40 7.9
20gb|AC163105.5| Mus musculus BAC clone RP23-259A11 from chromosom... 40 7.9
21emb|CR378672.1| Photobacterium profundum SS9; segment 10/12 40 7.9
22emb|CR847531.7| Zebrafish DNA sequence from clone CH211-145N14 i... 40 7.9
23emb|CR932966.2| Medicago truncatula chromosome 5 clone mth2-45l2... 40 7.9
24gb|AF235100.4| Homo sapiens chromosome 8 clone RP11-98A24 map 8q... 40 7.9
25gb|AC093748.3| Homo sapiens BAC clone RP11-29P18 from 4, complet... 40 7.9
26gb|AC154444.2| Mus musculus BAC clone RP24-179H6 from chromosome... 40 7.9
27gb|AC171009.3| Gallus gallus BAC clone CH261-146H18 from chromos... 40 7.9
28dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete ge... 40 7.9
29gb|AC151055.3| Mus musculus BAC clone RP23-24A9 from 6, complete... 40 7.9
30gb|AC152822.2| Mus musculus BAC clone RP24-319O19 from 6, comple... 40 7.9
31gb|AC173486.2| Mus musculus BAC clone RP23-18O16 from chromosome... 40 7.9
32gb|AC168066.4| Mus musculus BAC clone RP23-134F19 from chromosom... 40 7.9
33emb|AL928655.1|CNS08CBE Human chromosome 14 DNA sequence Partial... 40 7.9

>dbj|AK067475.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104C20, full
            insert sequence
          Length = 3031

 Score =  165 bits (83), Expect = 2e-37
 Identities = 368/463 (79%)
 Strand = Plus / Plus

                                                                        
Query: 116  agctgaacagaaacgccttaaagaggagttgacaagtgctgttgctgagttggaagaaag 175
            ||||||||| | ||| || |||||||||||| | ||||||| | ||||||||||||||| 
Sbjct: 683  agctgaacatagacgtctaaaagaggagttggccagtgctgcttctgagttggaagaaac 742

                                                                        
Query: 176  caaccacaaattggcagtcctcaaagcacagggagacacgacgcatggaactccaatctt 235
             ||| ||||| ||||||  || ||||| ||  |||| |  || || ||| ||| ||||  
Sbjct: 743  taactacaaactggcagcacttaaagctcaaagagataatacacaaggagctcgaatccc 802

                                                                        
Query: 236  atttccaactttaggaaataaaagcttgcatcaggataatgtcagagacaaacaaaagga 295
            || ||| || |||||||| ||||   ||| | | ||||| |||||||| |||||||  ||
Sbjct: 803  atatcctacattaggaaacaaaaatatgcctgaagataaggtcagagataaacaaagaga 862

                                                                        
Query: 296  attgcaggatctaggggcttctcacaaggagtttacgggtctgatttcacaacgcttggt 355
              |||||||||| |  ||| |||||||||| ||  |||   |||||||| | || |||||
Sbjct: 863  gatgcaggatcttgaagctactcacaaggaattatcggaattgatttcaaagcggttggt 922

                                                                        
Query: 356  tgaaataaggagacttcatgaagagagaattgcaattttgaacaagttggctacttttca 415
             ||||| | |||| | |||||||||||||||| ||||||||||||  | || ||||||||
Sbjct: 923  ggaaattaagagattacatgaagagagaattgaaattttgaacaaaatagcaacttttca 982

                                                                        
Query: 416  gaacactttgacggatttgaagagcatttcttcttcaaaagctttccaagttctgaagga 475
            ||| |  |||| |||||| |||||||||  ||||||||||||||| ||  || | || ||
Sbjct: 983  gaatatcttgatggatttcaagagcattcgttcttcaaaagcttttcagcttgttaatga 1042

                                                                        
Query: 476  tcaactccaaaagtcacaagcagagttggaccactgccgggcactattagagaaattaca 535
            || ||| || |||||||||||||| ||||| |||| || | || ||||||||||||||||
Sbjct: 1043 tcgacttcagaagtcacaagcagaattggatcactaccagacattattagagaaattaca 1102

                                                       
Query: 536  ggttaataaggataaattgatatggcaagaaagggaaattaat 578
            |||| |||||||||| ||  | |||||||||||| || |||||
Sbjct: 1103 ggttgataaggataagtttgtgtggcaagaaaggcaatttaat 1145



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>ref|XM_473416.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2652

 Score =  147 bits (74), Expect = 5e-32
 Identities = 200/242 (82%)
 Strand = Plus / Plus

                                                                        
Query: 337  tgatttcacaacgcttggttgaaataaggagacttcatgaagagagaattgcaattttga 396
            |||||||| | || ||||| ||||| | |||| | |||||||||||||||| ||||||||
Sbjct: 908  tgatttcaaagcggttggtggaaattaagagattacatgaagagagaattgaaattttga 967

                                                                        
Query: 397  acaagttggctacttttcagaacactttgacggatttgaagagcatttcttcttcaaaag 456
            ||||  | || ||||||||||| |  |||| |||||| |||||||||  |||||||||||
Sbjct: 968  acaaaatagcaacttttcagaatatcttgatggatttcaagagcattcgttcttcaaaag 1027

                                                                        
Query: 457  ctttccaagttctgaaggatcaactccaaaagtcacaagcagagttggaccactgccggg 516
            |||| ||  || | || |||| ||| || |||||||||||||| ||||| |||| || | 
Sbjct: 1028 cttttcagcttgttaatgatcgacttcagaagtcacaagcagaattggatcactaccaga 1087

                                                                        
Query: 517  cactattagagaaattacaggttaataaggataaattgatatggcaagaaagggaaatta 576
            || |||||||||||||||||||| |||||||||| ||  | |||||||||||| || |||
Sbjct: 1088 cattattagagaaattacaggttgataaggataagtttgtgtggcaagaaaggcaattta 1147

              
Query: 577  at 578
            ||
Sbjct: 1148 at 1149



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 65/77 (84%)
 Strand = Plus / Plus

                                                                       
Query: 116 agctgaacagaaacgccttaaagaggagttgacaagtgctgttgctgagttggaagaaag 175
           ||||||||| | ||| || |||||||||||| | ||||||| | ||||||||||||||| 
Sbjct: 744 agctgaacatagacgtctaaaagaggagttggccagtgctgcttctgagttggaagaaac 803

                            
Query: 176 caaccacaaattggcag 192
            ||| ||||| ||||||
Sbjct: 804 taactacaaactggcag 820



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>emb|AL663000.4|OSJN00201 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17,
             complete sequence
          Length = 127259

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                         
Query: 423   ttgacggatttgaagagcatttcttcttcaaaagctttccaagttctgaaggatcaactc 482
             |||| |||||| |||||||||  ||||||||||||||| ||  || | || |||| ||| 
Sbjct: 52677 ttgatggatttcaagagcattcgttcttcaaaagcttttcagcttgttaatgatcgactt 52618

                                                                     
Query: 483   caaaagtcacaagcagagttggaccactgccgggcactattagagaaattacaggt 538
             || |||||||||||||| ||||| |||| || | || |||||||||||||||||||
Sbjct: 52617 cagaagtcacaagcagaattggatcactaccagacattattagagaaattacaggt 52562



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                         
Query: 337   tgatttcacaacgcttggttgaaataaggagacttcatgaagagagaattgcaattttga 396
             |||||||| | || ||||| ||||| | |||| | |||||||||||||||| ||||||||
Sbjct: 52901 tgatttcaaagcggttggtggaaattaagagattacatgaagagagaattgaaattttga 52842

                 
Query: 397   acaa 400
             ||||
Sbjct: 52841 acaa 52838



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                      
Query: 136   aagaggagttgacaagtgctgttgctgagttggaagaaagcaaccacaaattggcag 192
             ||||||||||| | ||||||| | |||||||||||||||  ||| ||||| ||||||
Sbjct: 53320 aagaggagttggccagtgctgcttctgagttggaagaaactaactacaaactggcag 53264



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                            
Query: 423      ttgacggatttgaagagcatttcttcttcaaaagctttccaagttctgaaggatcaactc 482
                |||| |||||| |||||||||  ||||||||||||||| ||  || | || |||| ||| 
Sbjct: 27528701 ttgatggatttcaagagcattcgttcttcaaaagcttttcagcttgttaatgatcgactt 27528642

                                                                        
Query: 483      caaaagtcacaagcagagttggaccactgccgggcactattagagaaattacaggt 538
                || |||||||||||||| ||||| |||| || | || |||||||||||||||||||
Sbjct: 27528641 cagaagtcacaagcagaattggatcactaccagacattattagagaaattacaggt 27528586



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                            
Query: 337      tgatttcacaacgcttggttgaaataaggagacttcatgaagagagaattgcaattttga 396
                |||||||| | || ||||| ||||| | |||| | |||||||||||||||| ||||||||
Sbjct: 27528925 tgatttcaaagcggttggtggaaattaagagattacatgaagagagaattgaaattttga 27528866

                    
Query: 397      acaa 400
                ||||
Sbjct: 27528865 acaa 27528862



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                         
Query: 136      aagaggagttgacaagtgctgttgctgagttggaagaaagcaaccacaaattggcag 192
                ||||||||||| | ||||||| | |||||||||||||||  ||| ||||| ||||||
Sbjct: 27529344 aagaggagttggccagtgctgcttctgagttggaagaaactaactacaaactggcag 27529288



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>emb|AL139002.18| Human DNA sequence from clone RP11-318G21 on chromosome 13q22.2-31.1
              Contains the EDNRB gene for endothelin receptor type B,
              three novel genes and a CpG island, complete sequence
          Length = 183337

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 525    gagaaattacaggttaataagg 546
              ||||||||||||||||||||||
Sbjct: 182338 gagaaattacaggttaataagg 182317



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>gb|AC104867.18| Mus musculus chromosome 18, clone RP24-320L19, complete sequence
          Length = 148876

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 168   gaagaaagcaaccacaaattgg 189
             ||||||||||||||||||||||
Sbjct: 39315 gaagaaagcaaccacaaattgg 39336



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>ref|XM_719751.1| Plasmodium yoelii yoelii str. 17XNL glutamic acid-rich protein
           precursor (PY04532) partial mRNA
          Length = 2142

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 435 aagagcatttcttcttcaaaa 455
           |||||||||||||||||||||
Sbjct: 953 aagagcatttcttcttcaaaa 933



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>ref|XM_671829.1| Plasmodium berghei strain ANKA hypothetical protein (PB000625.00.0)
           partial mRNA
          Length = 564

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 435 aagagcatttcttcttcaaaa 455
           |||||||||||||||||||||
Sbjct: 419 aagagcatttcttcttcaaaa 399



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>gb|AC115786.8| Mus musculus chromosome 5, clone RP23-170E15, complete sequence
          Length = 193480

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    cgaagaaaagctgaacagaa 127
              ||||||||||||||||||||
Sbjct: 116904 cgaagaaaagctgaacagaa 116923



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>gb|AC125113.3| Mus musculus BAC clone RP24-251K23 from chromosome 6, complete sequence
          Length = 127380

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   caactttaggaaataaaagc 260
             ||||||||||||||||||||
Sbjct: 84620 caactttaggaaataaaagc 84601



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>gb|AC164874.3| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940134D9, complete sequence
          Length = 113536

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   gctcgaagaaaagctgaaca 124
             ||||||||||||||||||||
Sbjct: 66078 gctcgaagaaaagctgaaca 66059



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>gb|AC115760.9| Mus musculus chromosome 14, clone RP23-62M14, complete sequence
          Length = 222533

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 186    ttggcagtcctcaaagcaca 205
              ||||||||||||||||||||
Sbjct: 186940 ttggcagtcctcaaagcaca 186959



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>gb|AC129318.4| Mus musculus BAC clone RP23-464B17 from chromosome 6, complete sequence
          Length = 162905

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   caactttaggaaataaaagc 260
             ||||||||||||||||||||
Sbjct: 75445 caactttaggaaataaaagc 75426



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>gb|AC127376.3| Mus musculus BAC clone RP23-49A4 from chromosome 6, complete sequence
          Length = 204528

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 438   agcatttcttcttcaaaagctttc 461
             |||||||||||||||||| |||||
Sbjct: 84404 agcatttcttcttcaaaacctttc 84427



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>gb|AC124524.3| Mus musculus BAC clone RP23-402C9 from chromosome 14, complete
            sequence
          Length = 213751

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 186  ttggcagtcctcaaagcaca 205
            ||||||||||||||||||||
Sbjct: 3240 ttggcagtcctcaaagcaca 3259



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>gb|AC125329.4| Mus musculus BAC clone RP23-198F7 from 10, complete sequence
          Length = 211931

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    gaagaaaagctgaacagaaa 128
              ||||||||||||||||||||
Sbjct: 132376 gaagaaaagctgaacagaaa 132395



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>gb|AC115119.5| Mus musculus BAC clone RP23-87M19 from 18, complete sequence
          Length = 174491

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 528   aaattacaggttaataaggataaa 551
             ||||||||||||||||| ||||||
Sbjct: 44312 aaattacaggttaataaagataaa 44335



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>ref|XM_759706.1| Theileria parva strain Muguga hypothetical protein (TP02_0233)
            partial mRNA
          Length = 5769

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 395  gaacaagttggctacttttcagaa 418
            |||||||||| |||||||||||||
Sbjct: 1492 gaacaagttgactacttttcagaa 1515



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>gb|AC091766.2| Homo sapiens BAC clone RP11-393L14 from 7, complete sequence
          Length = 65542

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 453   aaagctttccaagttctgaaggat 476
             ||||||||||||||||||| ||||
Sbjct: 35708 aaagctttccaagttctgatggat 35731



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>gb|AC163105.5| Mus musculus BAC clone RP23-259A11 from chromosome 14, complete
             sequence
          Length = 227806

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 150   agtgctgttgctgagttggaagaaagca 177
             |||||||||||||||| || ||||||||
Sbjct: 66006 agtgctgttgctgagtagggagaaagca 65979



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>emb|CR378672.1| Photobacterium profundum SS9; segment 10/12
          Length = 348526

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 187    tggcagtcctcaaagcacagggag 210
              ||||||| ||||||||||||||||
Sbjct: 130602 tggcagtgctcaaagcacagggag 130579



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>emb|CR847531.7| Zebrafish DNA sequence from clone CH211-145N14 in linkage group 21,
             complete sequence
          Length = 150363

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   ctcaaagcacagggagacac 214
             ||||||||||||||||||||
Sbjct: 44895 ctcaaagcacagggagacac 44914



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>emb|CR932966.2| Medicago truncatula chromosome 5 clone mth2-45l22, COMPLETE SEQUENCE
          Length = 112211

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 284   caaacaaaaggaattgcagg 303
             ||||||||||||||||||||
Sbjct: 69193 caaacaaaaggaattgcagg 69212



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>gb|AF235100.4| Homo sapiens chromosome 8 clone RP11-98A24 map 8q24.3 , complete
             sequence
          Length = 129619

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   ttggaagaaagcaaccacaa 184
             ||||||||||||||||||||
Sbjct: 81543 ttggaagaaagcaaccacaa 81562



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>gb|AC093748.3| Homo sapiens BAC clone RP11-29P18 from 4, complete sequence
          Length = 112626

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    aagcacttggtgatctccac 53
             ||||||||||||||||||||
Sbjct: 60767 aagcacttggtgatctccac 60748



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>gb|AC154444.2| Mus musculus BAC clone RP24-179H6 from chromosome 13, complete sequence
          Length = 150924

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 384   attgcaattttgaacaagtt 403
             ||||||||||||||||||||
Sbjct: 27949 attgcaattttgaacaagtt 27968



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>gb|AC171009.3| Gallus gallus BAC clone CH261-146H18 from chromosome ul, complete
              sequence
          Length = 197416

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 23     tgatgccatacaagcacttggtga 46
              |||||||||| |||||||||||||
Sbjct: 158107 tgatgccataaaagcacttggtga 158084



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>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome
          Length = 3031430

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 78      aagcaccatgaagagagatattta 101
               |||||||||||||| |||||||||
Sbjct: 1046456 aagcaccatgaagaaagatattta 1046479



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>gb|AC151055.3| Mus musculus BAC clone RP23-24A9 from 6, complete sequence
          Length = 230998

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 241    caactttaggaaataaaagc 260
              ||||||||||||||||||||
Sbjct: 129513 caactttaggaaataaaagc 129532



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>gb|AC152822.2| Mus musculus BAC clone RP24-319O19 from 6, complete sequence
          Length = 184667

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 241    caactttaggaaataaaagc 260
              ||||||||||||||||||||
Sbjct: 168969 caactttaggaaataaaagc 168950



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>gb|AC173486.2| Mus musculus BAC clone RP23-18O16 from chromosome 16, complete sequence
          Length = 208322

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    atgaagagagatatttaaac 104
             ||||||||||||||||||||
Sbjct: 74791 atgaagagagatatttaaac 74810



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>gb|AC168066.4| Mus musculus BAC clone RP23-134F19 from chromosome 16, complete
             sequence
          Length = 198238

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    atgaagagagatatttaaac 104
             ||||||||||||||||||||
Sbjct: 78841 atgaagagagatatttaaac 78822



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>emb|AL928655.1|CNS08CBE Human chromosome 14 DNA sequence Partial sequence from BAC
            Z-CF0AFA001ZF04 of library Bidon from chromosome 14 of
            Homo sapiens (Human), complete sequence
          Length = 22822

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 229  caatcttatttccaacttta 248
            ||||||||||||||||||||
Sbjct: 6858 caatcttatttccaacttta 6877


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,326,181
Number of Sequences: 3902068
Number of extensions: 6326181
Number of successful extensions: 126508
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 126357
Number of HSP's gapped (non-prelim): 151
length of query: 578
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 555
effective length of database: 17,143,297,704
effective search space: 9514530225720
effective search space used: 9514530225720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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