| Clone Name | basd1i18 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK067475.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104C20, full insert sequence Length = 3031 Score = 165 bits (83), Expect = 2e-37 Identities = 368/463 (79%) Strand = Plus / Plus Query: 116 agctgaacagaaacgccttaaagaggagttgacaagtgctgttgctgagttggaagaaag 175 ||||||||| | ||| || |||||||||||| | ||||||| | ||||||||||||||| Sbjct: 683 agctgaacatagacgtctaaaagaggagttggccagtgctgcttctgagttggaagaaac 742 Query: 176 caaccacaaattggcagtcctcaaagcacagggagacacgacgcatggaactccaatctt 235 ||| ||||| |||||| || ||||| || |||| | || || ||| ||| |||| Sbjct: 743 taactacaaactggcagcacttaaagctcaaagagataatacacaaggagctcgaatccc 802 Query: 236 atttccaactttaggaaataaaagcttgcatcaggataatgtcagagacaaacaaaagga 295 || ||| || |||||||| |||| ||| | | ||||| |||||||| ||||||| || Sbjct: 803 atatcctacattaggaaacaaaaatatgcctgaagataaggtcagagataaacaaagaga 862 Query: 296 attgcaggatctaggggcttctcacaaggagtttacgggtctgatttcacaacgcttggt 355 |||||||||| | ||| |||||||||| || ||| |||||||| | || ||||| Sbjct: 863 gatgcaggatcttgaagctactcacaaggaattatcggaattgatttcaaagcggttggt 922 Query: 356 tgaaataaggagacttcatgaagagagaattgcaattttgaacaagttggctacttttca 415 ||||| | |||| | |||||||||||||||| |||||||||||| | || |||||||| Sbjct: 923 ggaaattaagagattacatgaagagagaattgaaattttgaacaaaatagcaacttttca 982 Query: 416 gaacactttgacggatttgaagagcatttcttcttcaaaagctttccaagttctgaagga 475 ||| | |||| |||||| ||||||||| ||||||||||||||| || || | || || Sbjct: 983 gaatatcttgatggatttcaagagcattcgttcttcaaaagcttttcagcttgttaatga 1042 Query: 476 tcaactccaaaagtcacaagcagagttggaccactgccgggcactattagagaaattaca 535 || ||| || |||||||||||||| ||||| |||| || | || |||||||||||||||| Sbjct: 1043 tcgacttcagaagtcacaagcagaattggatcactaccagacattattagagaaattaca 1102 Query: 536 ggttaataaggataaattgatatggcaagaaagggaaattaat 578 |||| |||||||||| || | |||||||||||| || ||||| Sbjct: 1103 ggttgataaggataagtttgtgtggcaagaaaggcaatttaat 1145
>ref|XM_473416.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2652 Score = 147 bits (74), Expect = 5e-32 Identities = 200/242 (82%) Strand = Plus / Plus Query: 337 tgatttcacaacgcttggttgaaataaggagacttcatgaagagagaattgcaattttga 396 |||||||| | || ||||| ||||| | |||| | |||||||||||||||| |||||||| Sbjct: 908 tgatttcaaagcggttggtggaaattaagagattacatgaagagagaattgaaattttga 967 Query: 397 acaagttggctacttttcagaacactttgacggatttgaagagcatttcttcttcaaaag 456 |||| | || ||||||||||| | |||| |||||| ||||||||| ||||||||||| Sbjct: 968 acaaaatagcaacttttcagaatatcttgatggatttcaagagcattcgttcttcaaaag 1027 Query: 457 ctttccaagttctgaaggatcaactccaaaagtcacaagcagagttggaccactgccggg 516 |||| || || | || |||| ||| || |||||||||||||| ||||| |||| || | Sbjct: 1028 cttttcagcttgttaatgatcgacttcagaagtcacaagcagaattggatcactaccaga 1087 Query: 517 cactattagagaaattacaggttaataaggataaattgatatggcaagaaagggaaatta 576 || |||||||||||||||||||| |||||||||| || | |||||||||||| || ||| Sbjct: 1088 cattattagagaaattacaggttgataaggataagtttgtgtggcaagaaaggcaattta 1147 Query: 577 at 578 || Sbjct: 1148 at 1149 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 116 agctgaacagaaacgccttaaagaggagttgacaagtgctgttgctgagttggaagaaag 175 ||||||||| | ||| || |||||||||||| | ||||||| | ||||||||||||||| Sbjct: 744 agctgaacatagacgtctaaaagaggagttggccagtgctgcttctgagttggaagaaac 803 Query: 176 caaccacaaattggcag 192 ||| ||||| |||||| Sbjct: 804 taactacaaactggcag 820
>emb|AL663000.4|OSJN00201 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence Length = 127259 Score = 79.8 bits (40), Expect = 9e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 423 ttgacggatttgaagagcatttcttcttcaaaagctttccaagttctgaaggatcaactc 482 |||| |||||| ||||||||| ||||||||||||||| || || | || |||| ||| Sbjct: 52677 ttgatggatttcaagagcattcgttcttcaaaagcttttcagcttgttaatgatcgactt 52618 Query: 483 caaaagtcacaagcagagttggaccactgccgggcactattagagaaattacaggt 538 || |||||||||||||| ||||| |||| || | || ||||||||||||||||||| Sbjct: 52617 cagaagtcacaagcagaattggatcactaccagacattattagagaaattacaggt 52562 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 337 tgatttcacaacgcttggttgaaataaggagacttcatgaagagagaattgcaattttga 396 |||||||| | || ||||| ||||| | |||| | |||||||||||||||| |||||||| Sbjct: 52901 tgatttcaaagcggttggtggaaattaagagattacatgaagagagaattgaaattttga 52842 Query: 397 acaa 400 |||| Sbjct: 52841 acaa 52838 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Minus Query: 136 aagaggagttgacaagtgctgttgctgagttggaagaaagcaaccacaaattggcag 192 ||||||||||| | ||||||| | ||||||||||||||| ||| ||||| |||||| Sbjct: 53320 aagaggagttggccagtgctgcttctgagttggaagaaactaactacaaactggcag 53264
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 79.8 bits (40), Expect = 9e-12 Identities = 97/116 (83%) Strand = Plus / Minus Query: 423 ttgacggatttgaagagcatttcttcttcaaaagctttccaagttctgaaggatcaactc 482 |||| |||||| ||||||||| ||||||||||||||| || || | || |||| ||| Sbjct: 27528701 ttgatggatttcaagagcattcgttcttcaaaagcttttcagcttgttaatgatcgactt 27528642 Query: 483 caaaagtcacaagcagagttggaccactgccgggcactattagagaaattacaggt 538 || |||||||||||||| ||||| |||| || | || ||||||||||||||||||| Sbjct: 27528641 cagaagtcacaagcagaattggatcactaccagacattattagagaaattacaggt 27528586 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 337 tgatttcacaacgcttggttgaaataaggagacttcatgaagagagaattgcaattttga 396 |||||||| | || ||||| ||||| | |||| | |||||||||||||||| |||||||| Sbjct: 27528925 tgatttcaaagcggttggtggaaattaagagattacatgaagagagaattgaaattttga 27528866 Query: 397 acaa 400 |||| Sbjct: 27528865 acaa 27528862 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Minus Query: 136 aagaggagttgacaagtgctgttgctgagttggaagaaagcaaccacaaattggcag 192 ||||||||||| | ||||||| | ||||||||||||||| ||| ||||| |||||| Sbjct: 27529344 aagaggagttggccagtgctgcttctgagttggaagaaactaactacaaactggcag 27529288
>emb|AL139002.18| Human DNA sequence from clone RP11-318G21 on chromosome 13q22.2-31.1 Contains the EDNRB gene for endothelin receptor type B, three novel genes and a CpG island, complete sequence Length = 183337 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 525 gagaaattacaggttaataagg 546 |||||||||||||||||||||| Sbjct: 182338 gagaaattacaggttaataagg 182317
>gb|AC104867.18| Mus musculus chromosome 18, clone RP24-320L19, complete sequence Length = 148876 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 168 gaagaaagcaaccacaaattgg 189 |||||||||||||||||||||| Sbjct: 39315 gaagaaagcaaccacaaattgg 39336
>ref|XM_719751.1| Plasmodium yoelii yoelii str. 17XNL glutamic acid-rich protein precursor (PY04532) partial mRNA Length = 2142 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 435 aagagcatttcttcttcaaaa 455 ||||||||||||||||||||| Sbjct: 953 aagagcatttcttcttcaaaa 933
>ref|XM_671829.1| Plasmodium berghei strain ANKA hypothetical protein (PB000625.00.0) partial mRNA Length = 564 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 435 aagagcatttcttcttcaaaa 455 ||||||||||||||||||||| Sbjct: 419 aagagcatttcttcttcaaaa 399
>gb|AC115786.8| Mus musculus chromosome 5, clone RP23-170E15, complete sequence Length = 193480 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 cgaagaaaagctgaacagaa 127 |||||||||||||||||||| Sbjct: 116904 cgaagaaaagctgaacagaa 116923
>gb|AC125113.3| Mus musculus BAC clone RP24-251K23 from chromosome 6, complete sequence Length = 127380 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 caactttaggaaataaaagc 260 |||||||||||||||||||| Sbjct: 84620 caactttaggaaataaaagc 84601
>gb|AC164874.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940134D9, complete sequence Length = 113536 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 gctcgaagaaaagctgaaca 124 |||||||||||||||||||| Sbjct: 66078 gctcgaagaaaagctgaaca 66059
>gb|AC115760.9| Mus musculus chromosome 14, clone RP23-62M14, complete sequence Length = 222533 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 ttggcagtcctcaaagcaca 205 |||||||||||||||||||| Sbjct: 186940 ttggcagtcctcaaagcaca 186959
>gb|AC129318.4| Mus musculus BAC clone RP23-464B17 from chromosome 6, complete sequence Length = 162905 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 caactttaggaaataaaagc 260 |||||||||||||||||||| Sbjct: 75445 caactttaggaaataaaagc 75426
>gb|AC127376.3| Mus musculus BAC clone RP23-49A4 from chromosome 6, complete sequence Length = 204528 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 438 agcatttcttcttcaaaagctttc 461 |||||||||||||||||| ||||| Sbjct: 84404 agcatttcttcttcaaaacctttc 84427
>gb|AC124524.3| Mus musculus BAC clone RP23-402C9 from chromosome 14, complete sequence Length = 213751 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 ttggcagtcctcaaagcaca 205 |||||||||||||||||||| Sbjct: 3240 ttggcagtcctcaaagcaca 3259
>gb|AC125329.4| Mus musculus BAC clone RP23-198F7 from 10, complete sequence Length = 211931 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 gaagaaaagctgaacagaaa 128 |||||||||||||||||||| Sbjct: 132376 gaagaaaagctgaacagaaa 132395
>gb|AC115119.5| Mus musculus BAC clone RP23-87M19 from 18, complete sequence Length = 174491 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 528 aaattacaggttaataaggataaa 551 ||||||||||||||||| |||||| Sbjct: 44312 aaattacaggttaataaagataaa 44335
>ref|XM_759706.1| Theileria parva strain Muguga hypothetical protein (TP02_0233) partial mRNA Length = 5769 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 395 gaacaagttggctacttttcagaa 418 |||||||||| ||||||||||||| Sbjct: 1492 gaacaagttgactacttttcagaa 1515
>gb|AC091766.2| Homo sapiens BAC clone RP11-393L14 from 7, complete sequence Length = 65542 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 453 aaagctttccaagttctgaaggat 476 ||||||||||||||||||| |||| Sbjct: 35708 aaagctttccaagttctgatggat 35731
>gb|AC163105.5| Mus musculus BAC clone RP23-259A11 from chromosome 14, complete sequence Length = 227806 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 150 agtgctgttgctgagttggaagaaagca 177 |||||||||||||||| || |||||||| Sbjct: 66006 agtgctgttgctgagtagggagaaagca 65979
>emb|CR378672.1| Photobacterium profundum SS9; segment 10/12 Length = 348526 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 187 tggcagtcctcaaagcacagggag 210 ||||||| |||||||||||||||| Sbjct: 130602 tggcagtgctcaaagcacagggag 130579
>emb|CR847531.7| Zebrafish DNA sequence from clone CH211-145N14 in linkage group 21, complete sequence Length = 150363 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ctcaaagcacagggagacac 214 |||||||||||||||||||| Sbjct: 44895 ctcaaagcacagggagacac 44914
>emb|CR932966.2| Medicago truncatula chromosome 5 clone mth2-45l22, COMPLETE SEQUENCE Length = 112211 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 caaacaaaaggaattgcagg 303 |||||||||||||||||||| Sbjct: 69193 caaacaaaaggaattgcagg 69212
>gb|AF235100.4| Homo sapiens chromosome 8 clone RP11-98A24 map 8q24.3 , complete sequence Length = 129619 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 ttggaagaaagcaaccacaa 184 |||||||||||||||||||| Sbjct: 81543 ttggaagaaagcaaccacaa 81562
>gb|AC093748.3| Homo sapiens BAC clone RP11-29P18 from 4, complete sequence Length = 112626 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 aagcacttggtgatctccac 53 |||||||||||||||||||| Sbjct: 60767 aagcacttggtgatctccac 60748
>gb|AC154444.2| Mus musculus BAC clone RP24-179H6 from chromosome 13, complete sequence Length = 150924 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 attgcaattttgaacaagtt 403 |||||||||||||||||||| Sbjct: 27949 attgcaattttgaacaagtt 27968
>gb|AC171009.3| Gallus gallus BAC clone CH261-146H18 from chromosome ul, complete sequence Length = 197416 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 23 tgatgccatacaagcacttggtga 46 |||||||||| ||||||||||||| Sbjct: 158107 tgatgccataaaagcacttggtga 158084
>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome Length = 3031430 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 78 aagcaccatgaagagagatattta 101 |||||||||||||| ||||||||| Sbjct: 1046456 aagcaccatgaagaaagatattta 1046479
>gb|AC151055.3| Mus musculus BAC clone RP23-24A9 from 6, complete sequence Length = 230998 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 caactttaggaaataaaagc 260 |||||||||||||||||||| Sbjct: 129513 caactttaggaaataaaagc 129532
>gb|AC152822.2| Mus musculus BAC clone RP24-319O19 from 6, complete sequence Length = 184667 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 caactttaggaaataaaagc 260 |||||||||||||||||||| Sbjct: 168969 caactttaggaaataaaagc 168950
>gb|AC173486.2| Mus musculus BAC clone RP23-18O16 from chromosome 16, complete sequence Length = 208322 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 atgaagagagatatttaaac 104 |||||||||||||||||||| Sbjct: 74791 atgaagagagatatttaaac 74810
>gb|AC168066.4| Mus musculus BAC clone RP23-134F19 from chromosome 16, complete sequence Length = 198238 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 atgaagagagatatttaaac 104 |||||||||||||||||||| Sbjct: 78841 atgaagagagatatttaaac 78822
>emb|AL928655.1|CNS08CBE Human chromosome 14 DNA sequence Partial sequence from BAC Z-CF0AFA001ZF04 of library Bidon from chromosome 14 of Homo sapiens (Human), complete sequence Length = 22822 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 caatcttatttccaacttta 248 |||||||||||||||||||| Sbjct: 6858 caatcttatttccaacttta 6877 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,326,181 Number of Sequences: 3902068 Number of extensions: 6326181 Number of successful extensions: 126508 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 126357 Number of HSP's gapped (non-prelim): 151 length of query: 578 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 555 effective length of database: 17,143,297,704 effective search space: 9514530225720 effective search space used: 9514530225720 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)