>BLM10_YEAST (P43583) Proteasome activator BLM10 (Bleomycin resistance protein|
            BLM10)
          Length = 2143

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 11/200 (5%)
 Frame = +2

Query: 17   FMIASLKSGRSSVLLDVIIVLFYPVLSLQETSNKDLSLLAK----SAFELLKWQTLRRPF 184
            + I  +  G + VLL   +V +     +    +KD+  LA       +  L +  +R+  
Sbjct: 1885 YWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNH 1944

Query: 185  LETAIMAILSSVNDPNWRTRSALLSYLRTFTYRHTFILSGSEKSQIWQTIEKLLVDNQ-V 361
            +   +  + SS    +       L++++ F       L+  EK++I + +   L + Q V
Sbjct: 1945 VAAIVDYVCSSNVALSSNQTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFV 2004

Query: 362  EVREHAAGVLASLMKGIDKDLSKDFRDRSYAQAQRILDTRRRTPKSGHSVAT----IHGA 529
            EVR  AA +L+ ++    ++         +A+    LD  + T K    ++     IHG 
Sbjct: 2005 EVRVRAASILSDIVHNWKEEQPLLSLIERFAKG---LDVNKYTSKERQKLSKTDIKIHGN 2061

Query: 530  VLALTASVLSVPY--DMPSW 583
            VL L A + + PY   +P W
Sbjct: 2062 VLGLGAIISAFPYVFPLPPW 2081

>V101_FOWPV (Q9J5B9) Protein FPV101|
          Length = 717

 Score = 33.1 bits (74), Expect = 0.60
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = -1

Query: 372 SLTSTWLSTSNFSIVCQICDFSEPERMNVCLYVKVLRYDNN 250
           S+    L  SN++++  + D+   ER+N  LY++++R+ N+
Sbjct: 292 SIIKLLLDNSNYTLLASVIDYIPEERLNENLYMQIVRHSND 332

>GCN1_YEAST (P33892) Translational activator GCN1|
          Length = 2672

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
 Frame = +2

Query: 137  KSAFELLK--WQTLRRPFLETAIMAILSSVNDPNWRTRSALLSYLRTFTYRHTFILSGSE 310
            K+A E LK   + +R P ++  +  +L ++ DP   T  AL S ++T   +    + G  
Sbjct: 1506 KAADESLKRFGEVIRNPEIQKLVPVLLQAIGDPTKYTEEALDSLIQT---QFVHYIDGPS 1562

Query: 311  KSQIWQTIEKLLVDNQVEVREHAAGVLASLMKGID-KDL 424
             + I   I + + D    ++  A  ++ ++   +D KDL
Sbjct: 1563 LALIIHIIHRGMHDRSANIKRKACKIVGNMAILVDTKDL 1601

>NIPB_DROME (Q7PLI2) Nipped-B protein (SCC2 homolog)|
          Length = 2077

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 176 RPFLETAIMAILSSVNDPNWRTRSALLSYLRTFTYRH 286
           RP  E  I  +L++VN P W     LLS L T   R+
Sbjct: 858 RPLFENFIHDLLATVNKPEWPASELLLSLLGTMLVRY 894

>CODA_ECOLI (P25524) Cytosine deaminase (EC 3.5.4.1) (Cytosine aminohydrolase)|
          Length = 426

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = +2

Query: 179 PFLETAI-MAILSSVNDPNWRTRSALLSYLRTFTYRHTFILSGSEKSQIWQTIEKLLVDN 355
           PF+E  I +    +   PNW     L   +  +  R   +     K + WQT++  + + 
Sbjct: 56  PFVEPHIHLDTTQTAGQPNWNQSGTLFEGIERWAERKALLTHDDVKQRAWQTLKWQIANG 115

Query: 356 QVEVREH 376
              VR H
Sbjct: 116 IQHVRTH 122

>PALY_USTMA (Q96V77) Phenylalanine ammonia-lyase (EC 4.3.1.5)|
          Length = 724

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = +2

Query: 353 NQVEVREHAAGVLASLMKGIDKDLSKDFRDR---SYAQAQRIL 472
           ++ + +E AA VL S+ K +D+  SKD RDR   +Y  A  +L
Sbjct: 564 DETKQQEIAAQVLKSMSKRLDETSSKDLRDRLVETYQDASSVL 606

>Y608_HAEIN (Q57486) Hypothetical protein HI0608|
          Length = 461

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 23/80 (28%), Positives = 42/80 (52%)
 Frame = +2

Query: 23  IASLKSGRSSVLLDVIIVLFYPVLSLQETSNKDLSLLAKSAFELLKWQTLRRPFLETAIM 202
           +ASL+S ++ ++  + IVLF+ +L++     K  S LA  AF  + W +       TA++
Sbjct: 4   MASLRSHKNGIIFILDIVLFFVLLNVLPFEPKANSGLALLAFIAVLWLSEALHVTITALL 63

Query: 203 AILSSVNDPNWRTRSALLSY 262
             L +V      T+ AL+ +
Sbjct: 64  VPLLAVALGLVSTKQALVGF 83

>NIPBL_HUMAN (Q6KC79) Nipped-B-like protein (Delangin) (SCC2 homolog)|
          Length = 2804

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 176  RPFLETAIMAILSSVNDPNWRTRSALLSYL 265
            RP  E  +  +LS+VN P W     LLS L
Sbjct: 1559 RPLFENFVQDLLSTVNKPEWPAAELLLSLL 1588

>NPBL_MOUSE (Q6KCD5) Nipped-B-like protein (Delangin homolog) (SCC2 homolog)|
          Length = 2798

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 176  RPFLETAIMAILSSVNDPNWRTRSALLSYL 265
            RP  E  +  +LS+VN P W     LLS L
Sbjct: 1553 RPLFENFVQDLLSTVNKPEWPAAELLLSLL 1582

>YIO4_YEAST (P40460) Hypothetical 80.5 kDa protein in SLN1-RAD25 intergenic|
           region
          Length = 691

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 18/71 (25%), Positives = 37/71 (52%)
 Frame = +2

Query: 146 FELLKWQTLRRPFLETAIMAILSSVNDPNWRTRSALLSYLRTFTYRHTFILSGSEKSQIW 325
           +++LK   LR PFLE+   + +S+V   NW     +L ++     +    L+  ++S I 
Sbjct: 188 YQILK--NLRYPFLESINKSQISAVGGSNWHKFLGMLHWMVRTNIKLDMCLNKVDRSLIN 245

Query: 326 QTIEKLLVDNQ 358
           Q  +++ + +Q
Sbjct: 246 QNTQEITILSQ 256

>GDE1_ASHGO (Q74ZH9) Glycerophosphodiester phosphodiesterase GDE1 (EC 3.1.4.46)|
          Length = 1321

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
 Frame = -1

Query: 444 LSRKSFDKSLSIP-FIKLARTPAACSLTSTWLSTSNFSIVCQICDFSEPERMNVCLYV-- 274
           LS  + +KSL+ P  + LA    + SL ++ LS   F I     D+ EPE +   LYV  
Sbjct: 484 LSFMNPEKSLNSPRLLHLATRLNSPSLLNSLLSAKGFDI-----DYQEPENLETALYVAC 538

Query: 273 KVLRYDNNADLVRQ 232
           K+  Y+    LV+Q
Sbjct: 539 KLDIYEAAEYLVKQ 552

>PHOSP_PI2H (P23055) Phosphoprotein (Protein P)|
          Length = 395

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 15/153 (9%)
 Frame = +2

Query: 164 QTLRRPFLETAIMAILSSVNDPNWRTRSALLSYLRTFTYRHTFILSGSE-KSQIWQTIEK 340
           QTL   F     ++   S  DPN++    L+   +  T     +L GSE +S+    +  
Sbjct: 137 QTLLTRFTSNEPVSSAGSAQDPNFKRGGELIEKEQEATIGENGVLHGSEIRSKSSSGVIP 196

Query: 341 LLVDNQVEVRE---HAAGVLAS---------LMKGIDKDLS--KDFRDRSYAQAQRILDT 478
            +  ++ ++     HA    AS         L+KG+D  L   +   D+  A +  I++ 
Sbjct: 197 GVPQSRPQLASSPAHADPAPASAENVKEIIELLKGLDLRLQTVEGKVDKILATSATIINL 256

Query: 479 RRRTPKSGHSVATIHGAVLALTASVLSVPYDMP 577
           +        SVAT+ G +  +     S P ++P
Sbjct: 257 KNEMTSLKASVATVEGMITTIKIMDPSTPTNVP 289


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,394,349
Number of Sequences: 219361
Number of extensions: 1684372
Number of successful extensions: 5250
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5248
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)