>WBP4_CHICK (Q5F457) WW domain-binding protein 4 (WBP-4)|
          Length = 398

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 29/81 (35%), Positives = 42/81 (51%)
 Frame = +1

Query: 94  MTEYWVSQGNKWCDLCKIFISNNPFSIRTHELGKRHKDNVTQRLSTMQKDGXXXXXXXXX 273
           M +YW SQ  K+CD CK +I++N  SI  HE GK HK+NV +R+S ++K           
Sbjct: 1   MADYWKSQPKKFCDYCKCWIADNRPSIDFHERGKNHKENVAKRISEIRKKSMEKAKEEEN 60

Query: 274 XXXXXXXXXXXXXXSYQKDLE 336
                         +YQ+DL+
Sbjct: 61  MSKEFAAMEEAAMKAYQEDLK 81

>WBP4_MOUSE (Q61048) WW domain-binding protein 4 (WBP-4) (Formin-binding|
           protein 21)
          Length = 376

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 27/81 (33%), Positives = 42/81 (51%)
 Frame = +1

Query: 94  MTEYWVSQGNKWCDLCKIFISNNPFSIRTHELGKRHKDNVTQRLSTMQKDGXXXXXXXXX 273
           M +YW SQ  K+CD CK +I++N  S+  HE GK HK+NV +R+S +++           
Sbjct: 1   MADYWKSQPKKFCDYCKCWIADNRPSVEFHERGKNHKENVARRISEIKQKSLDKAKEEEK 60

Query: 274 XXXXXXXXXXXXXXSYQKDLE 336
                         +YQ+DL+
Sbjct: 61  ASKEFAAMEAAALKAYQEDLK 81

>WBP4_HUMAN (O75554) WW domain-binding protein 4 (WBP-4) (Formin-binding|
           protein 21)
          Length = 376

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 27/81 (33%), Positives = 42/81 (51%)
 Frame = +1

Query: 94  MTEYWVSQGNKWCDLCKIFISNNPFSIRTHELGKRHKDNVTQRLSTMQKDGXXXXXXXXX 273
           M +YW SQ  K+CD CK +I++N  S+  HE GK HK+NV +R+S +++           
Sbjct: 1   MADYWKSQPKKFCDYCKCWIADNRPSVEFHERGKNHKENVAKRISEIKQKSLDKAKEEEK 60

Query: 274 XXXXXXXXXXXXXXSYQKDLE 336
                         +YQ+DL+
Sbjct: 61  ASKEFAAMEAAALKAYQEDLK 81

>WBP4_RAT (Q5HZF2) WW domain-binding protein 4 (WBP-4)|
          Length = 374

 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 26/81 (32%), Positives = 42/81 (51%)
 Frame = +1

Query: 94  MTEYWVSQGNKWCDLCKIFISNNPFSIRTHELGKRHKDNVTQRLSTMQKDGXXXXXXXXX 273
           M +YW SQ  K+CD CK +I++N  S+  HE GK HK+NV +++S +++           
Sbjct: 1   MADYWKSQPKKFCDYCKCWIADNRPSVEFHERGKNHKENVARKISEIKQKSLDKAKEEEK 60

Query: 274 XXXXXXXXXXXXXXSYQKDLE 336
                         +YQ+DL+
Sbjct: 61  ASKEFAAMEAAALKAYQEDLK 81

>ALG11_CANAL (Q59S72) Alpha-1,2-mannosyltransferase ALG11 (EC 2.4.1.-)|
           (Asparagine-linked glycosylation protein 11)
          Length = 609

 Score = 32.0 bits (71), Expect = 0.95
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 374 HLEKVWFFNT*MHNALHPLFPNC 442
           HL K+W FNT + N L  L+P C
Sbjct: 314 HLSKIWVFNTALGNVLDVLYPPC 336

>RU1C_XENLA (Q03369) U1 small nuclear ribonucleoprotein C (U1 snRNP protein C)|
           (U1C protein) (U1-C)
          Length = 159

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +1

Query: 127 WCDLCKIFISNNPFSIR-THELGKRHKDNV 213
           +CD C  +++++  S+R TH  G++HK+NV
Sbjct: 5   YCDYCDTYLTHDSPSVRKTHCSGRKHKENV 34

>RU1C_MOUSE (Q62241) U1 small nuclear ribonucleoprotein C (U1 snRNP protein C)|
           (U1C protein) (U1-C)
          Length = 159

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +1

Query: 127 WCDLCKIFISNNPFSIR-THELGKRHKDNV 213
           +CD C  +++++  S+R TH  G++HK+NV
Sbjct: 5   YCDYCDTYLTHDSPSVRKTHCSGRKHKENV 34

>RU1C_HUMAN (P09234) U1 small nuclear ribonucleoprotein C (U1 snRNP protein C)|
           (U1C protein) (U1-C)
          Length = 159

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +1

Query: 127 WCDLCKIFISNNPFSIR-THELGKRHKDNV 213
           +CD C  +++++  S+R TH  G++HK+NV
Sbjct: 5   YCDYCDTYLTHDSPSVRKTHCSGRKHKENV 34

>SEM4A_HUMAN (Q9H3S1) Semaphorin-4A precursor (Semaphorin B) (Sema B)|
          Length = 761

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 136 SRTICFLGSPNTQSWRAEAPRG 71
           SRT C L +PN  SW+ +  RG
Sbjct: 520 SRTCCLLSAPNLNSWKQDMERG 541

>FBXW4_HUMAN (P57775) F-box/WD-repeat protein 4 (F-box and WD-40 domain protein|
           4) (Dactylin)
          Length = 412

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -1

Query: 206 SLWRLPSSCVLMLNGLLDIKILHKSHHLFPWLTQYS 99
           +LWRLP   +L++   LD++ L +   +  WL +++
Sbjct: 27  ALWRLPEELLLLICSYLDMRALGRLAQVCRWLRRFT 62


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,230,529
Number of Sequences: 219361
Number of extensions: 1213768
Number of successful extensions: 4027
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4023
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)