ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd1h15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479695.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1587 Score = 91.7 bits (46), Expect = 2e-15 Identities = 94/110 (85%) Strand = Plus / Plus Query: 168 gtgatcggccacctgcacatggttggctcccagccacacgtctcccttggcgacctcgcc 227 |||||||||||| ||||| | || ||||||| ||||| |||||||| | ||||||||| Sbjct: 199 gtgatcggccacatgcacctcgtcggctccctcccacatgtctccctccgagacctcgcc 258 Query: 228 gccaagcacagccgcgacggcctcatgctcctccgcctcggctctgtccc 277 ||||| || |||||||||||||||||||| ||| ||||||||| ||||| Sbjct: 259 gccaaacatggccgcgacggcctcatgctcgtccacctcggctccgtccc 308
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 91.7 bits (46), Expect = 2e-15 Identities = 94/110 (85%) Strand = Plus / Plus Query: 168 gtgatcggccacctgcacatggttggctcccagccacacgtctcccttggcgacctcgcc 227 |||||||||||| ||||| | || ||||||| ||||| |||||||| | ||||||||| Sbjct: 302047 gtgatcggccacatgcacctcgtcggctccctcccacatgtctccctccgagacctcgcc 302106 Query: 228 gccaagcacagccgcgacggcctcatgctcctccgcctcggctctgtccc 277 ||||| || |||||||||||||||||||| ||| ||||||||| ||||| Sbjct: 302107 gccaaacatggccgcgacggcctcatgctcgtccacctcggctccgtccc 302156 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Plus Query: 205 acgtctcccttggcgacctcgccgccaagcacagccgcgacggcctcatgctcctccgcc 264 |||||||||| | |||||||||||||| || |||||||||||||||||||| |||||| Sbjct: 312838 acgtctccctccgagacctcgccgccaaacatggccgcgacggcctcatgctcgtccgcc 312897 Query: 265 tcggctctgtccc 277 ||||||| ||||| Sbjct: 312898 tcggctccgtccc 312910 Score = 54.0 bits (27), Expect = 5e-04 Identities = 80/95 (84%), Gaps = 2/95 (2%) Strand = Plus / Minus Query: 168 gtgatcggccacctgcacatggttggctcccagccacacgtctcccttggcgacctcgcc 227 ||||| |||||| ||||| | || |||||| | || ||||||||||| ||||||||||| Sbjct: 297263 gtgataggccacatgcacctcgtcggctccaaccctcacgtctccctccgcgacctcgcc 297204 Query: 228 gccaagcacagccgc-gacggcctcatgctcctcc 261 | |||||| ||||| |||||| |||||||||||| Sbjct: 297203 gagaagcac-gccgccgacggcttcatgctcctcc 297170 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 394 acatcgccttctgcccctacggcgaccactgg 425 ||||| |||||| ||||||||||||| ||||| Sbjct: 297037 acatctccttctccccctacggcgactactgg 297006
>dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0450B04 Length = 153268 Score = 91.7 bits (46), Expect = 2e-15 Identities = 94/110 (85%) Strand = Plus / Plus Query: 168 gtgatcggccacctgcacatggttggctcccagccacacgtctcccttggcgacctcgcc 227 |||||||||||| ||||| | || ||||||| ||||| |||||||| | ||||||||| Sbjct: 11561 gtgatcggccacatgcacctcgtcggctccctcccacatgtctccctccgagacctcgcc 11620 Query: 228 gccaagcacagccgcgacggcctcatgctcctccgcctcggctctgtccc 277 ||||| || |||||||||||||||||||| ||| ||||||||| ||||| Sbjct: 11621 gccaaacatggccgcgacggcctcatgctcgtccacctcggctccgtccc 11670 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Plus Query: 205 acgtctcccttggcgacctcgccgccaagcacagccgcgacggcctcatgctcctccgcc 264 |||||||||| | |||||||||||||| || |||||||||||||||||||| |||||| Sbjct: 22352 acgtctccctccgagacctcgccgccaaacatggccgcgacggcctcatgctcgtccgcc 22411 Query: 265 tcggctctgtccc 277 ||||||| ||||| Sbjct: 22412 tcggctccgtccc 22424 Score = 54.0 bits (27), Expect = 5e-04 Identities = 80/95 (84%), Gaps = 2/95 (2%) Strand = Plus / Minus Query: 168 gtgatcggccacctgcacatggttggctcccagccacacgtctcccttggcgacctcgcc 227 ||||| |||||| ||||| | || |||||| | || ||||||||||| ||||||||||| Sbjct: 6777 gtgataggccacatgcacctcgtcggctccaaccctcacgtctccctccgcgacctcgcc 6718 Query: 228 gccaagcacagccgc-gacggcctcatgctcctcc 261 | |||||| ||||| |||||| |||||||||||| Sbjct: 6717 gagaagcac-gccgccgacggcttcatgctcctcc 6684 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 394 acatcgccttctgcccctacggcgaccactgg 425 ||||| |||||| ||||||||||||| ||||| Sbjct: 6551 acatctccttctccccctacggcgactactgg 6520
>dbj|AP003909.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1300_E01 Length = 103022 Score = 91.7 bits (46), Expect = 2e-15 Identities = 94/110 (85%) Strand = Plus / Plus Query: 168 gtgatcggccacctgcacatggttggctcccagccacacgtctcccttggcgacctcgcc 227 |||||||||||| ||||| | || ||||||| ||||| |||||||| | ||||||||| Sbjct: 68473 gtgatcggccacatgcacctcgtcggctccctcccacatgtctccctccgagacctcgcc 68532 Query: 228 gccaagcacagccgcgacggcctcatgctcctccgcctcggctctgtccc 277 ||||| || |||||||||||||||||||| ||| ||||||||| ||||| Sbjct: 68533 gccaaacatggccgcgacggcctcatgctcgtccacctcggctccgtccc 68582 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Plus Query: 205 acgtctcccttggcgacctcgccgccaagcacagccgcgacggcctcatgctcctccgcc 264 |||||||||| | |||||||||||||| || |||||||||||||||||||| |||||| Sbjct: 79264 acgtctccctccgagacctcgccgccaaacatggccgcgacggcctcatgctcgtccgcc 79323 Query: 265 tcggctctgtccc 277 ||||||| ||||| Sbjct: 79324 tcggctccgtccc 79336 Score = 54.0 bits (27), Expect = 5e-04 Identities = 80/95 (84%), Gaps = 2/95 (2%) Strand = Plus / Minus Query: 168 gtgatcggccacctgcacatggttggctcccagccacacgtctcccttggcgacctcgcc 227 ||||| |||||| ||||| | || |||||| | || ||||||||||| ||||||||||| Sbjct: 63689 gtgataggccacatgcacctcgtcggctccaaccctcacgtctccctccgcgacctcgcc 63630 Query: 228 gccaagcacagccgc-gacggcctcatgctcctcc 261 | |||||| ||||| |||||| |||||||||||| Sbjct: 63629 gagaagcac-gccgccgacggcttcatgctcctcc 63596 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 394 acatcgccttctgcccctacggcgaccactgg 425 ||||| |||||| ||||||||||||| ||||| Sbjct: 63463 acatctccttctccccctacggcgactactgg 63432
>ref|XM_479696.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1575 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Plus Query: 205 acgtctcccttggcgacctcgccgccaagcacagccgcgacggcctcatgctcctccgcc 264 |||||||||| | |||||||||||||| || |||||||||||||||||||| |||||| Sbjct: 221 acgtctccctccgagacctcgccgccaaacatggccgcgacggcctcatgctcgtccgcc 280 Query: 265 tcggctctgtccc 277 ||||||| ||||| Sbjct: 281 tcggctccgtccc 293
>gb|AY485937.1| Thinopyrum ponticum P450 gene, complete cds Length = 1657 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 171 atcggccacctgcacatggttggctcccagccacacgtctcccttggcgacctcgccgcc 230 ||||||||||| ||| | | |||||||| || ||||| ||| | ||||||||||||| Sbjct: 201 atcggccacctccacctcatcggctcccacccccacgtatccttccgcgacctcgccgca 260 Query: 231 aagcacagccgcgacggcctcatgctc 257 ||||| |||||||||||||||||||| Sbjct: 261 aagcatggccgcgacggcctcatgctc 287
>gb|AY485936.1| Triticum aestivum P450 gene, complete cds Length = 1860 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 171 atcggccacctgcacatggttggctcccagccacacgtctcccttggcgacctcgccgcc 230 ||||||||||| ||| | | |||||||| || |||||||| | ||||||||||||| Sbjct: 201 atcggccacctccaccttatcggctcccacccccacgtctcattctgcgacctcgccgca 260 Query: 231 aagcacagccgcgacggcctcatgctc 257 ||||| |||||||||||||||||||| Sbjct: 261 aagcatggccgcgacggcctcatgctc 287
>gb|AY485941.1| Thinopyrum ponticum P450 mRNA, complete cds Length = 1657 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 171 atcggccacctgcacatggttggctcccagccacacgtctcccttggcgacctcgccgcc 230 ||||||||||| ||| | | |||||||| || |||||||| | ||||||||||||| Sbjct: 201 atcggccacctccaccttatcggctcccacccccacgtctcattctgcgacctcgccgca 260 Query: 231 aagcacagccgcgacggcctcatgctc 257 ||||| |||||||||||||||||||| Sbjct: 261 aagcatggccgcgacggcctcatgctc 287
>gb|AY485940.1| Triticum aestivum P450 mRNA, complete cds Length = 1657 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 171 atcggccacctgcacatggttggctcccagccacacgtctcccttggcgacctcgccgcc 230 ||||||||||| ||| | | |||||||| || |||||||| | ||||||||||||| Sbjct: 201 atcggccacctccaccttatcggctcccacccccacgtctcattctgcgacctcgccgca 260 Query: 231 aagcacagccgcgacggcctcatgctc 257 ||||| |||||||||||||||||||| Sbjct: 261 aagcatggccgcgacggcctcatgctc 287
>gb|AY485939.1| Triticum aestivum P450 mRNA, complete cds Length = 1657 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 171 atcggccacctgcacatggttggctcccagccacacgtctcccttggcgacctcgccgcc 230 ||||||||||| ||| | | |||||||| || |||||||| | ||||||||||||| Sbjct: 201 atcggccacctccaccttatcggctcccacccccacgtctcattctgcgacctcgccgca 260 Query: 231 aagcacagccgcgacggcctcatgctc 257 ||||| |||||||||||||||||||| Sbjct: 261 aagcatggccgcgacggcctcatgctc 287
>gb|AY485938.1| Triticum aestivum P450 mRNA, complete cds Length = 1657 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 171 atcggccacctgcacatggttggctcccagccacacgtctcccttggcgacctcgccgcc 230 ||||||||||| ||| | | |||||||| || |||||||| | ||||||||||||| Sbjct: 201 atcggccacctccaccttatcggctcccacccccacgtctcattctgcgacctcgccgca 260 Query: 231 aagcacagccgcgacggcctcatgctc 257 ||||| |||||||||||||||||||| Sbjct: 261 aagcatggccgcgacggcctcatgctc 287
>gb|AY485935.1| Triticum aestivum P450 gene, complete cds Length = 1657 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 171 atcggccacctgcacatggttggctcccagccacacgtctcccttggcgacctcgccgcc 230 ||||||||||| ||| | | |||||||| || ||||| ||| | ||||||||||||| Sbjct: 201 atcggccacctccacctcatcggctcccacccccacgtatccttccgcgacctcgccgca 260 Query: 231 aagcacagccgcgacggcctcatgctc 257 ||||| |||||||||||||||||||| Sbjct: 261 aagcatggccgcgacggcctcatgctc 287
>dbj|AB124854.1| Triticum aestivum CYP71C6v2 mRNA for P450, complete cds Length = 1899 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 171 atcggccacctgcacatggttggctcccagccacacgtctcccttggcgacctcgccgcc 230 ||||||||||| ||| | | |||||||| || |||||||| | ||||||||||||| Sbjct: 215 atcggccacctccaccttatcggctcccacccccacgtctcattccgcgacctcgccgca 274 Query: 231 aagcacagccgcgacggcctcatgctc 257 ||||| |||||||||||||||||||| Sbjct: 275 aagcatggccgcgacggcctcatgctc 301
>gb|AF123601.1| Triticum aestivum clone CYP71C1-15TA cytochrome P450 mRNA, complete cds Length = 1816 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 171 atcggccacctgcacatggttggctcccagccacacgtctcccttggcgacctcgccgcc 230 ||||||||||| ||| | | |||||||| || ||||| ||| | ||||||||||||| Sbjct: 202 atcggccacctccacctcatcggctcccacccccacgtatccttccgcgacctcgccgca 261 Query: 231 aagcacagccgcgacggcctcatgctc 257 ||||| |||||||||||||||||||| Sbjct: 262 aagcatggccgcgacggcctcatgctc 288
>dbj|AB042627.1| Triticum aestivum CYP71C6v1 mRNA for P450, complete cds Length = 1827 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 171 atcggccacctgcacatggttggctcccagccacacgtctcccttggcgacctcgccgcc 230 ||||||||||| ||| | | |||||||| || ||||| ||| | ||||||||||||| Sbjct: 206 atcggccacctccacctcatcggctcccacccccacgtatccttccgcgacctcgccgca 265 Query: 231 aagcacagccgcgacggcctcatgctc 257 ||||| |||||||||||||||||||| Sbjct: 266 aagcatggccgcgacggcctcatgctc 292
>dbj|AB124855.1| Triticum aestivum CYP71C6v3 mRNA for P450, complete cds Length = 1844 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 217 gcgacctcgccgccaagcacagccgcgacggcctcatgctc 257 ||||||||||||| ||||| |||||||||||||||||||| Sbjct: 259 gcgacctcgccgcaaagcatggccgcgacggcctcatgctc 299
>gb|AY504997.1| Triticum aestivum P450 gene, complete cds Length = 1657 Score = 54.0 bits (27), Expect = 5e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 171 atcggccacctgcacatggttggctcccagccacacgtctcccttggcgacctcgccgcc 230 ||||||||||| ||| | | |||||||| || |||||||| | ||| ||||||||| Sbjct: 201 atcggccacctccaccttatcggctcccacccccacgtctcattctgcggcctcgccgca 260 Query: 231 aagcacagccgcgacggcctcatgctc 257 ||||| |||||||||||||||||||| Sbjct: 261 aagcatggccgcgacggcctcatgctc 287
>ref|XM_479693.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1395 Score = 54.0 bits (27), Expect = 5e-04 Identities = 80/95 (84%), Gaps = 2/95 (2%) Strand = Plus / Plus Query: 168 gtgatcggccacctgcacatggttggctcccagccacacgtctcccttggcgacctcgcc 227 ||||| |||||| ||||| | || |||||| | || ||||||||||| ||||||||||| Sbjct: 432 gtgataggccacatgcacctcgtcggctccaaccctcacgtctccctccgcgacctcgcc 491 Query: 228 gccaagcacagccg-cgacggcctcatgctcctcc 261 | |||||| |||| ||||||| |||||||||||| Sbjct: 492 gagaagcac-gccgccgacggcttcatgctcctcc 525 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 394 acatcgccttctgcccctacggcgaccactgg 425 ||||| |||||| ||||||||||||| ||||| Sbjct: 658 acatctccttctccccctacggcgactactgg 689
>ref|XM_479692.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2151 Score = 54.0 bits (27), Expect = 5e-04 Identities = 80/95 (84%), Gaps = 2/95 (2%) Strand = Plus / Plus Query: 168 gtgatcggccacctgcacatggttggctcccagccacacgtctcccttggcgacctcgcc 227 ||||| |||||| ||||| | || |||||| | || ||||||||||| ||||||||||| Sbjct: 432 gtgataggccacatgcacctcgtcggctccaaccctcacgtctccctccgcgacctcgcc 491 Query: 228 gccaagcacagccg-cgacggcctcatgctcctcc 261 | |||||| |||| ||||||| |||||||||||| Sbjct: 492 gagaagcac-gccgccgacggcttcatgctcctcc 525 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 394 acatcgccttctgcccctacggcgaccactgg 425 ||||| |||||| ||||||||||||| ||||| Sbjct: 658 acatctccttctccccctacggcgactactgg 689
>dbj|AK067200.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097P19, full insert sequence Length = 2151 Score = 54.0 bits (27), Expect = 5e-04 Identities = 80/95 (84%), Gaps = 2/95 (2%) Strand = Plus / Plus Query: 168 gtgatcggccacctgcacatggttggctcccagccacacgtctcccttggcgacctcgcc 227 ||||| |||||| ||||| | || |||||| | || ||||||||||| ||||||||||| Sbjct: 432 gtgataggccacatgcacctcgtcggctccaaccctcacgtctccctccgcgacctcgcc 491 Query: 228 gccaagcacagccg-cgacggcctcatgctcctcc 261 | |||||| |||| ||||||| |||||||||||| Sbjct: 492 gagaagcac-gccgccgacggcttcatgctcctcc 525 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 394 acatcgccttctgcccctacggcgaccactgg 425 ||||| |||||| ||||||||||||| ||||| Sbjct: 658 acatctccttctccccctacggcgactactgg 689
>dbj|AK065355.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013014E16, full insert sequence Length = 1395 Score = 54.0 bits (27), Expect = 5e-04 Identities = 80/95 (84%), Gaps = 2/95 (2%) Strand = Plus / Plus Query: 168 gtgatcggccacctgcacatggttggctcccagccacacgtctcccttggcgacctcgcc 227 ||||| |||||| ||||| | || |||||| | || ||||||||||| ||||||||||| Sbjct: 432 gtgataggccacatgcacctcgtcggctccaaccctcacgtctccctccgcgacctcgcc 491 Query: 228 gccaagcacagccg-cgacggcctcatgctcctcc 261 | |||||| |||| ||||||| |||||||||||| Sbjct: 492 gagaagcac-gccgccgacggcttcatgctcctcc 525 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 394 acatcgccttctgcccctacggcgaccactgg 425 ||||| |||||| ||||||||||||| ||||| Sbjct: 658 acatctccttctccccctacggcgactactgg 689
>gb|AY462229.1| Hordeum lechleri Bx4-like protein mRNA, complete cds Length = 1807 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 217 gcgacctcgccgccaagcacagccgcgacggcctcatgctc 257 ||||||||||||| ||||| |||| ||||||||||||||| Sbjct: 250 gcgacctcgccgcaaagcatggccgtgacggcctcatgctc 290
>ref|XM_472908.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1530 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Plus Query: 249 ctcatgctcctccgcctcggctctgtcccgacgctc 284 |||||||| |||||||||||||| || ||||||||| Sbjct: 217 ctcatgctgctccgcctcggctccgtgccgacgctc 252
>ref|XM_472907.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1557 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Plus Query: 249 ctcatgctcctccgcctcggctctgtcccgacgctc 284 |||||||| |||||||||||||| || ||||||||| Sbjct: 220 ctcatgctgctccgcctcggctccgtgccgacgctc 255
>emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0011N17, complete sequence Length = 129498 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Minus Query: 249 ctcatgctcctccgcctcggctctgtcccgacgctc 284 |||||||| |||||||||||||| || ||||||||| Sbjct: 23083 ctcatgctgctccgcctcggctccgtgccgacgctc 23048 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Minus Query: 249 ctcatgctcctccgcctcggctctgtcccgacgctc 284 |||||||| |||||||||||||| || ||||||||| Sbjct: 19051 ctcatgctgctccgcctcggctccgtgccgacgctc 19016
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Minus Query: 249 ctcatgctcctccgcctcggctctgtcccgacgctc 284 |||||||| |||||||||||||| || ||||||||| Sbjct: 24026104 ctcatgctgctccgcctcggctccgtgccgacgctc 24026069 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Minus Query: 249 ctcatgctcctccgcctcggctctgtcccgacgctc 284 |||||||| |||||||||||||| || ||||||||| Sbjct: 24022072 ctcatgctgctccgcctcggctccgtgccgacgctc 24022037
>dbj|AK121175.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023082O06, full insert sequence Length = 1733 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Plus Query: 249 ctcatgctcctccgcctcggctctgtcccgacgctc 284 |||||||| |||||||||||||| || ||||||||| Sbjct: 276 ctcatgctgctccgcctcggctccgtgccgacgctc 311
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 236 cagccgcgacggcctcatgctcctccg 262 ||||||| ||||||||||||||||||| Sbjct: 2971839 cagccgccacggcctcatgctcctccg 2971813 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 248 cctcatgctcctccgcctcggc 269 |||||||||||||||||||||| Sbjct: 21856562 cctcatgctcctccgcctcggc 21856583
>gb|AC109365.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0034P08, complete sequence Length = 173088 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 236 cagccgcgacggcctcatgctcctccg 262 ||||||| ||||||||||||||||||| Sbjct: 11618 cagccgccacggcctcatgctcctccg 11644
>gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0007P22, complete sequence Length = 148068 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 236 cagccgcgacggcctcatgctcctccg 262 ||||||| ||||||||||||||||||| Sbjct: 123136 cagccgccacggcctcatgctcctccg 123162
>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0016I15, complete sequence Length = 166282 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 236 cagccgcgacggcctcatgctcctccg 262 ||||||| ||||||||||||||||||| Sbjct: 109326 cagccgccacggcctcatgctcctccg 109300
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 236 cagccgcgacggcctcatgctcctccg 262 ||||||| ||||||||||||||||||| Sbjct: 22329680 cagccgccacggcctcatgctcctccg 22329654 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 408 ccctacggcgaccactggaggcagg 432 |||||||||||||||||| |||||| Sbjct: 15548311 ccctacggcgaccactggcggcagg 15548287
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 236 cagccgcgacggcctcatgctcctccg 262 ||||||| ||||||||||||||||||| Sbjct: 2971950 cagccgccacggcctcatgctcctccg 2971924 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 248 cctcatgctcctccgcctcggc 269 |||||||||||||||||||||| Sbjct: 21849591 cctcatgctcctccgcctcggc 21849612
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 236 cagccgcgacggcctcatgctcctccg 262 ||||||| ||||||||||||||||||| Sbjct: 22639591 cagccgccacggcctcatgctcctccg 22639565 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 408 ccctacggcgaccactggaggcagg 432 |||||||||||||||||| |||||| Sbjct: 15635830 ccctacggcgaccactggcggcagg 15635806
>ref|NM_189330.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1659 Score = 44.1 bits (22), Expect = 0.48 Identities = 31/34 (91%) Strand = Plus / Plus Query: 250 tcatgctcctccgcctcggctctgtcccgacgct 283 |||||||||||||||||||| ||||| |||||| Sbjct: 311 tcatgctcctccgcctcggccatgtccggacgct 344
>ref|NM_189329.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1572 Score = 44.1 bits (22), Expect = 0.48 Identities = 31/34 (91%) Strand = Plus / Plus Query: 250 tcatgctcctccgcctcggctctgtcccgacgct 283 |||||||||||||||||||| ||||| |||||| Sbjct: 221 tcatgctcctccgcctcggccatgtccggacgct 254
>gb|AC135564.4| Oryza sativa chromosome 3 BAC OSJNBb0056O10 genomic sequence, complete sequence Length = 139771 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 248 cctcatgctcctccgcctcggc 269 |||||||||||||||||||||| Sbjct: 31254 cctcatgctcctccgcctcggc 31233
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.48 Identities = 31/34 (91%) Strand = Plus / Plus Query: 250 tcatgctcctccgcctcggctctgtcccgacgct 283 |||||||||||||||||||| ||||| |||||| Sbjct: 42204527 tcatgctcctccgcctcggccatgtccggacgct 42204560 Score = 44.1 bits (22), Expect = 0.48 Identities = 31/34 (91%) Strand = Plus / Plus Query: 250 tcatgctcctccgcctcggctctgtcccgacgct 283 |||||||||||||||||||| ||||| |||||| Sbjct: 42198882 tcatgctcctccgcctcggccatgtccggacgct 42198915 Score = 40.1 bits (20), Expect = 7.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 248 cctcatgctcctccgcctcggctctgtcccgacgctcattgtcacctc 295 |||||||||||||| ||||||| ||||||| ||||||||| |||| Sbjct: 20120599 cctcatgctcctccacctcggccaagtcccgaacctcattgtctcctc 20120646
>dbj|AP004326.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1294_F06 Length = 121088 Score = 44.1 bits (22), Expect = 0.48 Identities = 31/34 (91%) Strand = Plus / Plus Query: 250 tcatgctcctccgcctcggctctgtcccgacgct 283 |||||||||||||||||||| ||||| |||||| Sbjct: 77725 tcatgctcctccgcctcggccatgtccggacgct 77758 Score = 44.1 bits (22), Expect = 0.48 Identities = 31/34 (91%) Strand = Plus / Plus Query: 250 tcatgctcctccgcctcggctctgtcccgacgct 283 |||||||||||||||||||| ||||| |||||| Sbjct: 72080 tcatgctcctccgcctcggccatgtccggacgct 72113
>gb|BT018846.1| Zea mays clone EL01N0555A04.d mRNA sequence Length = 1672 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 241 gcgacggcctcatgctcctccgcctcggc 269 |||||||| ||||||| |||||||||||| Sbjct: 236 gcgacggcttcatgctgctccgcctcggc 264
>gb|AC135512.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0057M06, complete sequence Length = 147673 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 408 ccctacggcgaccactggaggcagg 432 |||||||||||||||||| |||||| Sbjct: 53721 ccctacggcgaccactggcggcagg 53697
>gb|AC121909.3| Mus musculus BAC clone RP24-179L9 from chromosome 5, complete sequence Length = 155771 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 ctgctgtgagctatgggtgag 23 ||||||||||||||||||||| Sbjct: 125481 ctgctgtgagctatgggtgag 125461
>gb|AF321858.1|AF321858 Lolium rigidum clone BXH putative cytochrome P450 mRNA, complete cds Length = 1865 Score = 42.1 bits (21), Expect = 1.9 Identities = 57/69 (82%) Strand = Plus / Plus Query: 411 tacggcgaccactggaggcaggtgaagaagatcgccatgacgcacctcctcaccgccaac 470 |||||||| ||||| ||||||||| ||||||| || || ||| ||||||||||||| Sbjct: 448 tacggcgagtactggcggcaggtgaggaagatcatcaccacccacgtcctcaccgccaag 507 Query: 471 aaggtccgc 479 ||| ||||| Sbjct: 508 aagatccgc 516
>gb|AC151716.5| Mus musculus BAC clone RP23-316A23 from 5, complete sequence Length = 193466 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 ctgctgtgagctatgggtgag 23 ||||||||||||||||||||| Sbjct: 185438 ctgctgtgagctatgggtgag 185458
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 291 acctcgtcgaacgccgcgcgggcg 314 |||||| ||||||||||||||||| Sbjct: 288918 acctcgccgaacgccgcgcgggcg 288941
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 ggtcgtggccaagctccgcg 534 |||||||||||||||||||| Sbjct: 2352949 ggtcgtggccaagctccgcg 2352930
>gb|AC123867.4| Mus musculus BAC clone RP23-127O13 from chromosome 14, complete sequence Length = 216834 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 gccccacaaccccgccaccg 369 |||||||||||||||||||| Sbjct: 135748 gccccacaaccccgccaccg 135767
>emb|AJ245444.1|DME245444 Drosophila melanogaster mRNA for serpin (Spn43Ac) Length = 1523 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 tgccaagcgatgagctcctg 44 |||||||||||||||||||| Sbjct: 140 tgccaagcgatgagctcctg 121
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 ggcgacctcgccgccaagca 235 |||||||||||||||||||| Sbjct: 3575374 ggcgacctcgccgccaagca 3575393
>emb|AL121837.33|HSJ988J12 Human DNA sequence from clone RP5-988J12 on chromosome 6q16.1-16.3 Contains the 5' end of the MAP3K7 gene for mitogen-activated protein kinase kinase kinase 7 (TGF-beta activated kinase 1, TAK1) and two CpG islands, complete sequence Length = 86398 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 486 cgccaggcgcgcgaggaggaggcg 509 ||||||||||||| |||||||||| Sbjct: 25377 cgccaggcgcgcgcggaggaggcg 25400
>emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genome; segment 5/16 Length = 349737 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 ggcgacctcgccgccaagca 235 |||||||||||||||||||| Sbjct: 189906 ggcgacctcgccgccaagca 189887
>gb|AC151836.3| Mus musculus BAC clone RP23-359F5 from chromosome 14, complete sequence Length = 230502 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 gccccacaaccccgccaccg 369 |||||||||||||||||||| Sbjct: 14355 gccccacaaccccgccaccg 14374
>gb|AY102659.1| Drosophila melanogaster GH10112 full insert cDNA Length = 1662 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 tgccaagcgatgagctcctg 44 |||||||||||||||||||| Sbjct: 167 tgccaagcgatgagctcctg 148
>ref|NM_080112.1| Drosophila melanogaster necrotic CG1857-RA (nec), mRNA Length = 1621 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 tgccaagcgatgagctcctg 44 |||||||||||||||||||| Sbjct: 167 tgccaagcgatgagctcctg 148
>gb|AC097445.1| Drosophila melanogaster, chromosome 2R, region 43A-43B, BAC clone BACR12F04, complete sequence Length = 197994 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 tgccaagcgatgagctcctg 44 |||||||||||||||||||| Sbjct: 91118 tgccaagcgatgagctcctg 91099
>dbj|AB193030.1| Corynebacterium glutamicum DNA, strain specific island 3, strain: R Length = 56248 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 351 ccccacaaccccgccaccgacatc 374 ||||||||||| |||||||||||| Sbjct: 33720 ccccacaaccctgccaccgacatc 33743
>dbj|AP004232.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0051H17 Length = 187471 Score = 40.1 bits (20), Expect = 7.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 248 cctcatgctcctccgcctcggctctgtcccgacgctcattgtcacctc 295 |||||||||||||| ||||||| ||||||| ||||||||| |||| Sbjct: 26977 cctcatgctcctccacctcggccaagtcccgaacctcattgtctcctc 27024
>dbj|AP004233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0065J17 Length = 139014 Score = 40.1 bits (20), Expect = 7.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 248 cctcatgctcctccgcctcggctctgtcccgacgctcattgtcacctc 295 |||||||||||||| ||||||| ||||||| ||||||||| |||| Sbjct: 118561 cctcatgctcctccacctcggccaagtcccgaacctcattgtctcctc 118608
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 522 gccaagctccgcgatgcgatggcc 545 |||||||||||||| ||||||||| Sbjct: 2683734 gccaagctccgcgaggcgatggcc 2683757
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 gcaggtgaagaagatcgcca 447 |||||||||||||||||||| Sbjct: 324245 gcaggtgaagaagatcgcca 324226
>gb|AE003842.4| Drosophila melanogaster chromosome 2R, section 8 of 73 of the complete sequence Length = 231065 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 tgccaagcgatgagctcctg 44 |||||||||||||||||||| Sbjct: 138958 tgccaagcgatgagctcctg 138977
>gb|AC006469.1|AC006469 Drosophila melanogaster, chromosome 2R, region 43A1-43A2, P1 clones DS02730 and DS07472, complete sequence Length = 89938 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 tgccaagcgatgagctcctg 44 |||||||||||||||||||| Sbjct: 84868 tgccaagcgatgagctcctg 84887
>gb|U46844.1|MSU46844 Mycobacterium smegmatis catalase-peroxidase (katG), putative arabinosyl transferase (embC, embA, embB), genes complete cds and putative propionyl-coA carboxylase beta chain (pccB) genes, partial cds Length = 16951 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 cgccgccaagcacagccgcg 243 |||||||||||||||||||| Sbjct: 6128 cgccgccaagcacagccgcg 6147 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,387,927 Number of Sequences: 3902068 Number of extensions: 3387927 Number of successful extensions: 65624 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64360 Number of HSP's gapped (non-prelim): 1264 length of query: 550 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 527 effective length of database: 17,143,297,704 effective search space: 9034517890008 effective search space used: 9034517890008 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
