ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd1f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC108440.8| Mus musculus chromosome 19, clone RP23-379H7, com... 44 0.50
2ref|NM_004654.3| Homo sapiens ubiquitin specific peptidase 9, Y-... 42 2.0
3emb|AL133511.9| Human DNA sequence from clone RP1-4K15 on chromo... 42 2.0
4emb|Y13619.1|HSDFFRYRT Homo sapiens mRNA for DFFRY protein, rare... 42 2.0
5emb|Y13618.1|HSDFFRYAT Homo sapiens mRNA for DFFRY protein, abun... 42 2.0
6emb|CR392034.10| Zebrafish DNA sequence from clone DKEY-271M10 i... 42 2.0
7gb|AC002531.1|AC002531 Homo sapiens chromosome Y, clone 486_O_8,... 42 2.0
8gb|AF000986.2|HSAF000986 Homo sapiens chromosome Y ubiquitin spe... 42 2.0
9dbj|AP005434.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 2.0
10dbj|AP002778.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 2.0
11dbj|AP000617.4| Homo sapiens genomic DNA, chromosome 11q clone:C... 42 2.0
12gb|AC113514.9| Mus musculus chromosome 19, clone RP23-475D11, co... 40 7.9
13gb|AC146106.3| Pan troglodytes BAC clone RP43-5I17 from 7, compl... 40 7.9
14gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence 40 7.9
15gb|AC146511.3| Pan troglodytes BAC clone RP43-72N15 from 7, comp... 40 7.9
16gb|AC125215.4| Mus musculus BAC clone RP23-93K19 from 6, complet... 40 7.9
17gb|AY167999.1| Homo sapiens enamelin (ENAM) gene, complete cds 40 7.9
18gb|AC157809.4| Mus musculus chromosome 1, clone RP24-375B12, com... 40 7.9
19emb|AL513263.9| Human DNA sequence from clone CTB-1189H8 on chro... 40 7.9
20emb|AL161911.17| Human DNA sequence from clone RP11-27I1 on chro... 40 7.9
21emb|CR377214.13| Zebrafish DNA sequence from clone CH211-261F19 ... 40 7.9
22emb|AL807378.5| Zebrafish DNA sequence from clone CH211-215A18 i... 40 7.9
23gb|AC159890.2| Mus musculus BAC clone RP24-80J11 from chromosome... 40 7.9
24gb|AC114773.4| Homo sapiens BAC clone RP11-464H17 from 4, comple... 40 7.9
25gb|AC109518.6| Homo sapiens BAC clone RP11-492P11 from 4, comple... 40 7.9
26emb|BX663499.5| Zebrafish DNA sequence from clone CH211-160I2 in... 40 7.9
27dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
28gb|AC093772.2| Homo sapiens BAC clone RP11-125O18 from 4, comple... 40 7.9
29gb|AC009570.13|AC009570 Homo sapiens chromosome 4, clone RP11-46... 40 7.9
30gb|AC096744.3| Homo sapiens BAC clone RP11-357C17 from 2, comple... 40 7.9
31gb|AC117695.15| Mus musculus chromosome 1, clone RP23-450I19, co... 40 7.9
32dbj|AP005613.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
33dbj|AK108037.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.9
34gb|AC153642.7| Mus musculus 6 BAC RP23-334E23 (Roswell Park Canc... 40 7.9
35gb|AC003666.1|AC003666 Homo sapiens Xp22 BAC GS-551O19 (Genome S... 40 7.9
36emb|CR759742.10| Zebrafish DNA sequence from clone CH211-149K24 ... 40 7.9
37emb|AL928598.7| Mouse DNA sequence from clone RP23-326I20 on chr... 40 7.9
38gb|AC172370.2| Gallus gallus BAC clone CH261-119J18 from chromos... 40 7.9
39emb|CT030644.8| Mouse DNA sequence from clone RP24-82E11 on chro... 40 7.9
40gb|AC125046.3| Mus musculus BAC clone RP23-349O22 from 6, comple... 40 7.9
41emb|AL611931.22| Mouse DNA sequence from clone RP23-460D14 on ch... 40 7.9 
>gb|AC108440.8| Mus musculus chromosome 19, clone RP23-379H7, complete sequence
          Length = 177196

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 70    gattcctgttgttttgtttgtt 91
             ||||||||||||||||||||||
Sbjct: 60829 gattcctgttgttttgtttgtt 60808
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>ref|NM_004654.3| Homo sapiens ubiquitin specific peptidase 9, Y-linked (fat
            facets-like, Drosophila) (USP9Y), mRNA
          Length = 10048

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 36   caagcttctgctacagctcga 56
            |||||||||||||||||||||
Sbjct: 4469 caagcttctgctacagctcga 4449
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>emb|AL133511.9| Human DNA sequence from clone RP1-4K15 on chromosome 6 Contains STSs
             and GSSs, complete sequence
          Length = 51589

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 433   tgttgctgtctctggctgata 453
             |||||||||||||||||||||
Sbjct: 47175 tgttgctgtctctggctgata 47195
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>emb|Y13619.1|HSDFFRYRT Homo sapiens mRNA for DFFRY protein, rare transcript
          Length = 7947

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 36   caagcttctgctacagctcga 56
            |||||||||||||||||||||
Sbjct: 3581 caagcttctgctacagctcga 3561
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>emb|Y13618.1|HSDFFRYAT Homo sapiens mRNA for DFFRY protein, abundant transcript
          Length = 7932

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 36   caagcttctgctacagctcga 56
            |||||||||||||||||||||
Sbjct: 3581 caagcttctgctacagctcga 3561
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>emb|CR392034.10| Zebrafish DNA sequence from clone DKEY-271M10 in linkage group 5,
             complete sequence
          Length = 189356

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 75    ctgttgttttgtttgttctct 95
             |||||||||||||||||||||
Sbjct: 17481 ctgttgttttgtttgttctct 17461
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>gb|AC002531.1|AC002531 Homo sapiens chromosome Y, clone 486_O_8, complete sequence
          Length = 197900

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 36    caagcttctgctacagctcga 56
             |||||||||||||||||||||
Sbjct: 90700 caagcttctgctacagctcga 90680
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>gb|AF000986.2|HSAF000986 Homo sapiens chromosome Y ubiquitin specific protease 9 (USP9Y) mRNA,
            complete cds
          Length = 9372

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 36   caagcttctgctacagctcga 56
            |||||||||||||||||||||
Sbjct: 4469 caagcttctgctacagctcga 4449
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>dbj|AP005434.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-721O19, complete
            sequence
          Length = 163308

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 288  ttatatctgagccaagaaagg 308
            |||||||||||||||||||||
Sbjct: 6161 ttatatctgagccaagaaagg 6181
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>dbj|AP002778.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-643C11, complete
              sequence
          Length = 160242

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 288    ttatatctgagccaagaaagg 308
              |||||||||||||||||||||
Sbjct: 115207 ttatatctgagccaagaaagg 115227
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>dbj|AP000617.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-26H5, complete
           sequences
          Length = 100785

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 288 ttatatctgagccaagaaagg 308
           |||||||||||||||||||||
Sbjct: 853 ttatatctgagccaagaaagg 873
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>gb|AC113514.9| Mus musculus chromosome 19, clone RP23-475D11, complete sequence
          Length = 170366

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 288   ttatatctgagccaagaaag 307
             ||||||||||||||||||||
Sbjct: 95840 ttatatctgagccaagaaag 95859
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>gb|AC146106.3| Pan troglodytes BAC clone RP43-5I17 from 7, complete sequence
          Length = 221821

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 65    tgagagattcctgttgttttgttt 88
             ||||| ||||||||||||||||||
Sbjct: 34410 tgagaaattcctgttgttttgttt 34433
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>gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence
          Length = 141360

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 389   ggtgtaaatttggaaacttc 408
             ||||||||||||||||||||
Sbjct: 61969 ggtgtaaatttggaaacttc 61988
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>gb|AC146511.3| Pan troglodytes BAC clone RP43-72N15 from 7, complete sequence
          Length = 192395

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 65   tgagagattcctgttgttttgttt 88
            ||||| ||||||||||||||||||
Sbjct: 2592 tgagaaattcctgttgttttgttt 2569
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>gb|AC125215.4| Mus musculus BAC clone RP23-93K19 from 6, complete sequence
          Length = 215584

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    catgtgaatttactaattta 130
              ||||||||||||||||||||
Sbjct: 197405 catgtgaatttactaattta 197424
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>gb|AY167999.1| Homo sapiens enamelin (ENAM) gene, complete cds
          Length = 18450

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 72   ttcctgttgttttgtttgtt 91
            ||||||||||||||||||||
Sbjct: 8421 ttcctgttgttttgtttgtt 8402
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>gb|AC157809.4| Mus musculus chromosome 1, clone RP24-375B12, complete sequence
          Length = 138350

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 473    tggagcccaactgtaccatc 492
              ||||||||||||||||||||
Sbjct: 135582 tggagcccaactgtaccatc 135563
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>emb|AL513263.9| Human DNA sequence from clone CTB-1189H8 on chromosome 1 Contains the
             3' end of the SYT14 gene for synaptotagmin XIV, complete
             sequence
          Length = 125553

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 76    tgttgttttgtttgttctctcttt 99
             ||||||||||||| ||||||||||
Sbjct: 14906 tgttgttttgttttttctctcttt 14883
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>emb|AL161911.17| Human DNA sequence from clone RP11-27I1 on chromosome 9 Contains the
             FBXW2 gene for F-box and WD-40 domain protein 2 (FBW2),
             two novel genes, a UDP-Gal:betaGlcNAc beta
             1,3-galactosyltransferase, polypeptide 3 (B3GALT3)
             pseudogene, the PSMD5 gene for proteasome (prosome,
             macropain) 26S subunit, non-ATPase, 5 (S5B, KIAA0072,
             MGC23145), the 3' end of a novel gene (DKFZP727G051) and
             two CpG islands, complete sequence
          Length = 109176

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 78    ttgttttgtttgttctctctttac 101
             ||||||||||| ||||||||||||
Sbjct: 18781 ttgttttgttttttctctctttac 18758
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>emb|CR377214.13| Zebrafish DNA sequence from clone CH211-261F19 in linkage group 6,
             complete sequence
          Length = 181635

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    ttcctgttgttttgtttgtt 91
             ||||||||||||||||||||
Sbjct: 13688 ttcctgttgttttgtttgtt 13707
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>emb|AL807378.5| Zebrafish DNA sequence from clone CH211-215A18 in linkage group 7
              Contains three CpG islands, complete sequence
          Length = 198700

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 559    atccatgtatatcatgtaaa 578
              ||||||||||||||||||||
Sbjct: 156252 atccatgtatatcatgtaaa 156233
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>gb|AC159890.2| Mus musculus BAC clone RP24-80J11 from chromosome 9, complete sequence
          Length = 226770

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 353    ccttttttggaaagatacct 372
              ||||||||||||||||||||
Sbjct: 141587 ccttttttggaaagatacct 141606
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>gb|AC114773.4| Homo sapiens BAC clone RP11-464H17 from 4, complete sequence
          Length = 13617

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 78  ttgttttgtttgttctctct 97
           ||||||||||||||||||||
Sbjct: 182 ttgttttgtttgttctctct 163
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>gb|AC109518.6| Homo sapiens BAC clone RP11-492P11 from 4, complete sequence
          Length = 172189

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 78     ttgttttgtttgttctctct 97
              ||||||||||||||||||||
Sbjct: 170371 ttgttttgtttgttctctct 170352
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>emb|BX663499.5| Zebrafish DNA sequence from clone CH211-160I2 in linkage group 2,
            complete sequence
          Length = 195369

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 451  atagtaacaaaaataaactttctg 474
            |||||||||||||||||| |||||
Sbjct: 8095 atagtaacaaaaataaacattctg 8072
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 556     ttcatccatgtatatcatgt 575
               ||||||||||||||||||||
Sbjct: 7938838 ttcatccatgtatatcatgt 7938819
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>gb|AC093772.2| Homo sapiens BAC clone RP11-125O18 from 4, complete sequence
          Length = 175490

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     tgatttttcaagcttctgct 47
              ||||||||||||||||||||
Sbjct: 158950 tgatttttcaagcttctgct 158931
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>gb|AC009570.13|AC009570 Homo sapiens chromosome 4, clone RP11-46J23, complete sequence
          Length = 180596

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     ttcctgttgttttgtttgtt 91
              ||||||||||||||||||||
Sbjct: 170906 ttcctgttgttttgtttgtt 170925
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>gb|AC096744.3| Homo sapiens BAC clone RP11-357C17 from 2, complete sequence
          Length = 38931

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 72   ttcctgttgttttgtttgtt 91
            ||||||||||||||||||||
Sbjct: 8303 ttcctgttgttttgtttgtt 8284
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>gb|AC117695.15| Mus musculus chromosome 1, clone RP23-450I19, complete sequence
          Length = 188171

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 473    tggagcccaactgtaccatc 492
              ||||||||||||||||||||
Sbjct: 108602 tggagcccaactgtaccatc 108583
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>dbj|AP005613.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0082C09
          Length = 160665

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 556   ttcatccatgtatatcatgt 575
             ||||||||||||||||||||
Sbjct: 62253 ttcatccatgtatatcatgt 62234
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>dbj|AK108037.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-C10, full
            insert sequence
          Length = 1326

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 556  ttcatccatgtatatcatgt 575
            ||||||||||||||||||||
Sbjct: 1254 ttcatccatgtatatcatgt 1235
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>gb|AC153642.7| Mus musculus 6 BAC RP23-334E23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 227781

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 520    aagagaacttctctagctga 539
              ||||||||||||||||||||
Sbjct: 174081 aagagaacttctctagctga 174062
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>gb|AC003666.1|AC003666 Homo sapiens Xp22 BAC GS-551O19 (Genome Systems Human BAC library) and
              cosmids U199A7 and U209F2 (Lawrence Livermore X chromosome
              cosmid library) containing part of human chloride channel 4
              gene, complete sequence
          Length = 151750

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 240    ggggggatgcagcttttctg 259
              ||||||||||||||||||||
Sbjct: 122696 ggggggatgcagcttttctg 122677
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>emb|CR759742.10| Zebrafish DNA sequence from clone CH211-149K24 in linkage group 7,
             complete sequence
          Length = 130794

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 559   atccatgtatatcatgtaaa 578
             ||||||||||||||||||||
Sbjct: 48441 atccatgtatatcatgtaaa 48460
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>emb|AL928598.7| Mouse DNA sequence from clone RP23-326I20 on chromosome 2, complete
             sequence
          Length = 148583

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 520   aagagaacttctctagctga 539
             ||||||||||||||||||||
Sbjct: 24774 aagagaacttctctagctga 24755
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>gb|AC172370.2| Gallus gallus BAC clone CH261-119J18 from chromosome ul, complete
              sequence
          Length = 260878

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 152    gcaaaagggccaatgcgtac 171
              ||||||||||||||||||||
Sbjct: 251231 gcaaaagggccaatgcgtac 251250
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>emb|CT030644.8| Mouse DNA sequence from clone RP24-82E11 on chromosome 9, complete
             sequence
          Length = 211707

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 353   ccttttttggaaagatacct 372
             ||||||||||||||||||||
Sbjct: 80684 ccttttttggaaagatacct 80703
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>gb|AC125046.3| Mus musculus BAC clone RP23-349O22 from 6, complete sequence
          Length = 223938

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     ttgttttgtttgttctctct 97
              ||||||||||||||||||||
Sbjct: 177374 ttgttttgtttgttctctct 177393
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>emb|AL611931.22| Mouse DNA sequence from clone RP23-460D14 on chromosome 4, complete
              sequence
          Length = 201635

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     tctgctacagctcgagctgc 61
              ||||||||||||||||||||
Sbjct: 158439 tctgctacagctcgagctgc 158420


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,494,083
Number of Sequences: 3902068
Number of extensions: 6494083
Number of successful extensions: 151571
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 151443
Number of HSP's gapped (non-prelim): 128
length of query: 578
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 555
effective length of database: 17,143,297,704
effective search space: 9514530225720
effective search space used: 9514530225720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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