ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd1f06 |
|---|---|
| Clone Library Name | barley_pub |
>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 161 bits (408), Expect = 1e-39 Identities = 80/134 (59%), Positives = 93/134 (69%) Frame = +2 Query: 26 MATSTMAFMPLKPSPSTFSGHSQLQRIQPFTRSSSFRVMSKKAKKVQTSQPFGPGGGLEL 205 M+ MA + LKPS S S+L ++P R S +++KKAKKVQT+QP+GPGGG+ Sbjct: 1 MSACVMASLALKPSSSPLLQRSKLGGVRPSARPSLV-IVAKKAKKVQTAQPYGPGGGVAF 59 Query: 206 KDGVDASGRPAKGKGVYQFASKYGANVDGYSPIYNPEEWSPSGDYYAGGKTGLLLWVXXX 385 K+GVDASGR AKGKGVYQFA KYGANVDGYSPIY PEEWSPSGD Y GGKTGL LW Sbjct: 60 KEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTL 119 Query: 386 XXXXXXXXXXVYNT 427 VY+T Sbjct: 120 AGILLGGALLVYST 133
>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 144 bits (362), Expect = 3e-34 Identities = 71/135 (52%), Positives = 88/135 (65%), Gaps = 1/135 (0%) Frame = +2 Query: 26 MATSTMAFMPLKPSPSTFSGHSQLQRIQPFTRSS-SFRVMSKKAKKVQTSQPFGPGGGLE 202 MATS M+ + LKPS S ++ + +RSS SF V + KK++ +P G GGG++ Sbjct: 1 MATSVMSSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMK 60 Query: 203 LKDGVDASGRPAKGKGVYQFASKYGANVDGYSPIYNPEEWSPSGDYYAGGKTGLLLWVXX 382 L+DGVD+SGR GKGVYQF KYGANVDGYSPIYN EEW+P+GD YAGG TGLL+W Sbjct: 61 LRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVT 120 Query: 383 XXXXXXXXXXXVYNT 427 VYNT Sbjct: 121 LAGLLAGGALLVYNT 135
>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 135 bits (339), Expect = 1e-31 Identities = 69/136 (50%), Positives = 89/136 (65%), Gaps = 2/136 (1%) Frame = +2 Query: 26 MATSTMAFMPLKPSPSTFSGHS-QLQRIQPFTRSSS-FRVMSKKAKKVQTSQPFGPGGGL 199 MA++ M+ + LKP TF+ ++ + TRSSS F+V++ KK++T +P+G G + Sbjct: 1 MASTVMSSLSLKP---TFTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSM 57 Query: 200 ELKDGVDASGRPAKGKGVYQFASKYGANVDGYSPIYNPEEWSPSGDYYAGGKTGLLLWVX 379 L+DGVDASGR KGKGVYQ+ KYGANVDGYSPIYN +EWSPSGD Y GG TGL +W Sbjct: 58 ALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAV 117 Query: 380 XXXXXXXXXXXXVYNT 427 VYNT Sbjct: 118 TLLGILAGGALLVYNT 133
>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor| (Light-inducible tissue-specific ST-LS1 protein) Length = 138 Score = 134 bits (338), Expect = 2e-31 Identities = 68/138 (49%), Positives = 87/138 (63%), Gaps = 4/138 (2%) Frame = +2 Query: 26 MATSTMAFMPLKPS----PSTFSGHSQLQRIQPFTRSSSFRVMSKKAKKVQTSQPFGPGG 193 MA++ M+ + LKP+ ++ G L R SSSF+V++ KK++T +P+G G Sbjct: 1 MASTVMSSLSLKPTFTLEKTSVKGLPSLAR-----SSSSFKVVASGVKKLKTDKPYGING 55 Query: 194 GLELKDGVDASGRPAKGKGVYQFASKYGANVDGYSPIYNPEEWSPSGDYYAGGKTGLLLW 373 + L+DGVDASGR KGKGVYQ+ KYGANVDGYSPIYN +EWSPSGD Y GG TGL +W Sbjct: 56 SMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIW 115 Query: 374 VXXXXXXXXXXXXXVYNT 427 VYNT Sbjct: 116 AVTLVGILAGGALLVYNT 133
>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor| (PII10) Length = 136 Score = 132 bits (332), Expect = 8e-31 Identities = 65/127 (51%), Positives = 82/127 (64%), Gaps = 1/127 (0%) Frame = +2 Query: 50 MPLKPSPSTFSGHSQLQRIQPFTRSSS-FRVMSKKAKKVQTSQPFGPGGGLELKDGVDAS 226 M LKP+P + + ++ + RSSS FRV + KK++T +P+G G + L+DGVDAS Sbjct: 6 MSLKPAPFSVE-KTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDAS 64 Query: 227 GRPAKGKGVYQFASKYGANVDGYSPIYNPEEWSPSGDYYAGGKTGLLLWVXXXXXXXXXX 406 GR KGKGVYQF KYGANVDGYSPIYN ++WSPSGD Y GG TGL +W Sbjct: 65 GRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGG 124 Query: 407 XXXVYNT 427 V+NT Sbjct: 125 ALLVFNT 131
>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 141 Score = 129 bits (325), Expect = 5e-30 Identities = 69/140 (49%), Positives = 84/140 (60%), Gaps = 6/140 (4%) Frame = +2 Query: 26 MATSTM-AFMPLKPSPSTFS-----GHSQLQRIQPFTRSSSFRVMSKKAKKVQTSQPFGP 187 MA S M + + LKP+ T G L R P SSFR+++ KK++T +PFG Sbjct: 1 MAASVMLSSVTLKPAGFTVEKMSARGLPSLTRASP----SSFRIVASGVKKIKTDKPFGV 56 Query: 188 GGGLELKDGVDASGRPAKGKGVYQFASKYGANVDGYSPIYNPEEWSPSGDYYAGGKTGLL 367 G ++L+DGVDASGR KG GVY+F KYGANVDGYSPIYN +EWS SGD Y GG TGL Sbjct: 57 NGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLA 116 Query: 368 LWVXXXXXXXXXXXXXVYNT 427 +W VYNT Sbjct: 117 IWAVTLAGILAGGALLVYNT 136
>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 124 bits (312), Expect = 2e-28 Identities = 66/140 (47%), Positives = 83/140 (59%), Gaps = 6/140 (4%) Frame = +2 Query: 26 MATSTM-AFMPLKPSPSTFS-----GHSQLQRIQPFTRSSSFRVMSKKAKKVQTSQPFGP 187 MA S M + + LKP+ T G L R +P SF++++ KK++T +PFG Sbjct: 1 MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARP-----SFKIVASGVKKIKTDKPFGI 55 Query: 188 GGGLELKDGVDASGRPAKGKGVYQFASKYGANVDGYSPIYNPEEWSPSGDYYAGGKTGLL 367 G ++L+DGVDASGR KG GVY++ KYGANVDGYSPIYN EWS SGD Y GG TGL Sbjct: 56 NGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLA 115 Query: 368 LWVXXXXXXXXXXXXXVYNT 427 +W VYNT Sbjct: 116 IWAVTLAGILAGGALLVYNT 135
>SORC2_MOUSE (Q9EPR5) VPS10 domain-containing receptor SorCS2 precursor| Length = 1159 Score = 32.3 bits (72), Expect = 1.1 Identities = 23/79 (29%), Positives = 32/79 (40%) Frame = +2 Query: 14 LLSFMATSTMAFMPLKPSPSTFSGHSQLQRIQPFTRSSSFRVMSKKAKKVQTSQPFGPGG 193 LL + + M P P Q+ R+ P R+ S +K + + S+P PG Sbjct: 38 LLLLVLVAACGAMGRSPQPGRQGPGVQITRLLPAGRTESG---DRKDPQARESEPSVPGL 94 Query: 194 GLELKDGVDASGRPAKGKG 250 G G G PA GKG Sbjct: 95 GPGSASGPSTDGAPAPGKG 113
>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (RPB1) (Fragment) Length = 467 Score = 30.0 bits (66), Expect = 5.5 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +2 Query: 212 GVDASGRPAKGKGVYQFASKYGANVDGYSPIYNPEEWSPS 331 G+ A+GR G F+ ++ G+SP Y+P WSP+ Sbjct: 27 GLGAAGRSGMTPGAAGFSPSAASDASGFSPGYSP-AWSPT 65
>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator| of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) (CTG repeat p Length = 2517 Score = 30.0 bits (66), Expect = 5.5 Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 24/96 (25%) Frame = -2 Query: 402 PSRIPARVATQSNNPV-----FPPA**SPLGDHSSGLYIGLYPSTFAPYLL--------- 265 PS+ +T +++PV FPPA PLG G G+YP+ P LL Sbjct: 1892 PSKPTVLRSTSTSSPVRPAATFPPATHCPLG----GTLDGVYPTLMEPVLLPKEAPRVAR 1947 Query: 264 ----------ANW*TPFPLAGLPDASTPSFNSNPPP 187 A P +GL AS+PS S P P Sbjct: 1948 PERPRADTGHAFLAKPPARSGLEPASSPSKGSEPRP 1983
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 30.0 bits (66), Expect = 5.5 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Frame = +2 Query: 143 SKKAKKVQTSQPFGPG--GGLELKDGVDASGRPAKGKGVYQFASKYGAN 283 SK+ K+ + P GG+ L DG A+ R A+G + FA K GA+ Sbjct: 382 SKRQKRNEYESMQAPNVIGGVRLPDGKGATIRLARGASLADFADKIGAD 430
>MURE_WIGBR (Q8D2Z1) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 496 Score = 29.3 bits (64), Expect = 9.4 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 10/73 (13%) Frame = +1 Query: 322 VSKW*LLCGRKDRVVALGGYSC----------WNSAGWCSSCLQY*CFGFLKPGIASQTM 471 ++KW L G K ++ GY C NSA C L + FLK I + M Sbjct: 129 IAKWLFLLGEKIGIIGTLGYGCLNKMKKSKNTTNSAIKCQKLLNF----FLKKNINTVVM 184 Query: 472 YCTMQGFTSSRVD 510 + G +RV+ Sbjct: 185 EVSSHGLHQNRVN 197
>PKSL_BACSU (Q05470) Putative polyketide synthase pksL (PKS)| Length = 4538 Score = 29.3 bits (64), Expect = 9.4 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%) Frame = +2 Query: 110 PFTRSSSFRVMSKKAKKVQTSQPFGPGGGLELKDGVD--ASGRPA 238 PF R + ++ KA++ +T +PF P + K VD ASG+PA Sbjct: 2527 PFARDRYWIDVNAKAEEKRTEEPFAPVQPVIPKPSVDREASGKPA 2571
>ALB2_PEA (P08688) Albumin-2 (PA2)| Length = 231 Score = 29.3 bits (64), Expect = 9.4 Identities = 17/45 (37%), Positives = 23/45 (51%) Frame = +2 Query: 155 KKVQTSQPFGPGGGLELKDGVDASGRPAKGKGVYQFASKYGANVD 289 KK+ PF G E +G+DA+ R +GK VY F A +D Sbjct: 103 KKIADMFPFFEGTVFE--NGIDAAYRSTRGKEVYLFKGDQYARID 145
>VB15_VARV (P33877) Protein B15| Length = 149 Score = 29.3 bits (64), Expect = 9.4 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%) Frame = -3 Query: 542 VIKPRDIGA-RISTLDDVNPCMVQYIVW 462 V P+ G R++++DDV C+ +YI W Sbjct: 9 VFSPQHCGCDRLTSIDDVRQCLTEYIYW 36
>VB15_VACCV (P24772) Protein B15| Length = 149 Score = 29.3 bits (64), Expect = 9.4 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%) Frame = -3 Query: 542 VIKPRDIGA-RISTLDDVNPCMVQYIVW 462 V P+ G R++++DDV C+ +YI W Sbjct: 9 VFSPQHCGCDRLTSIDDVRQCLTEYIYW 36
>VB15_VACCC (P21089) Protein B15| Length = 149 Score = 29.3 bits (64), Expect = 9.4 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%) Frame = -3 Query: 542 VIKPRDIGA-RISTLDDVNPCMVQYIVW 462 V P+ G R++++DDV C+ +YI W Sbjct: 9 VFSPQHCGCDRLTSIDDVKQCLTEYIYW 36 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,017,939 Number of Sequences: 219361 Number of extensions: 2150424 Number of successful extensions: 6030 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5754 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6022 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
