ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd1e09 |
|---|---|
| Clone Library Name | barley_pub |
>PUB14_ARATH (Q8VZ40) E3 ubiquitin ligase PUB14 (EC 6.3.2.-) (Prototypical U-box| domain protein 14) Length = 632 Score = 60.5 bits (145), Expect = 3e-09 Identities = 42/131 (32%), Positives = 60/131 (45%) Frame = +1 Query: 154 PDTAPLKSLLSDIGISDAASCQAEIDYLEEQILSQDEDTDXXXXXXXXXXXRYSLFSQFD 333 PD LK L ++ ++ + E + E LS D D D F + Sbjct: 168 PDPIILKRLSQELQLTTIDELKKESHAIHEYFLSYDGDPDDCFERMSSLLKNLVDFVTME 227 Query: 334 PGNAKAVRYWPSAGNLQRLPSWGGGGCEDTSFSVPKEFSCPISLDLMRDPVVASTGQTYD 513 + PS G+ R+ S S +P+ F CPISL+LM+DPV+ STGQTY+ Sbjct: 228 SSDPD-----PSTGS--RIVS------RHRSPVIPEYFRCPISLELMKDPVIVSTGQTYE 274 Query: 514 RPSIIQWIGEG 546 R SI +W+ G Sbjct: 275 RSSIQKWLDAG 285
>SPL11_ORYSA (Q64HA9) Spotted leaf protein 11 (Spotted leaf11) (Cell| death-related protein SPL11) Length = 694 Score = 58.9 bits (141), Expect = 9e-09 Identities = 24/39 (61%), Positives = 31/39 (79%) Frame = +1 Query: 430 SVPKEFSCPISLDLMRDPVVASTGQTYDRPSIIQWIGEG 546 ++P EF CPISL+LM+DPV+ STGQTY+R I +WI G Sbjct: 272 TIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASG 310
>MYO5_YEAST (Q04439) Myosin-5| Length = 1219 Score = 31.2 bits (69), Expect = 2.0 Identities = 18/78 (23%), Positives = 31/78 (39%) Frame = -3 Query: 545 PSPIHCMIDGRSYVWPVDATTGSRIKSKEIGQENSLGTEKEVSSQPPPPHDGSRCKFPAD 366 P+P + +S P T +R ++G+ ++ + PPPP K P + Sbjct: 1029 PNPASTLTASQSNARPSPPTAATRATPAATPAAAAMGSGRQANIPPPPPPPPPSSK-PKE 1087 Query: 365 GQYRTAFALPGSNCEKRL 312 + A+ PGS L Sbjct: 1088 PMFEAAYDFPGSGSPSEL 1105
>NF7B_XENLA (Q92021) Nuclear factor 7, brain (xNF7) (xNF7-B)| Length = 609 Score = 30.0 bits (66), Expect = 4.4 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%) Frame = +1 Query: 439 KEFSCPISLDLMRDPVVASTGQTYDRPSIIQ-WIGE 543 +E +CP+ ++L +DPV+ + G + R I + W G+ Sbjct: 141 EELTCPLCVELFKDPVMVACGHNFCRSCIDKAWEGQ 176
>STUB1_MOUSE (Q9WUD1) STIP1 homology and U box-containing protein 1 (EC 6.3.2.-)| (STIP1 homology and U-box-containing protein 1) (Carboxy terminus of Hsp70-interacting protein) (E3 ubiquitin protein ligase CHIP) Length = 304 Score = 30.0 bits (66), Expect = 4.4 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 433 VPKEFSCPISLDLMRDPVVASTGQTYDRPSI 525 +P IS +LMR+P + +G TYDR I Sbjct: 228 IPDYLCGKISFELMREPCITPSGITYDRKDI 258
>STUB1_CHICK (Q5ZHY5) STIP1 homology and U box-containing protein 1 (EC 6.3.2.-)| (STIP1 homology and U-box-containing protein 1) Length = 314 Score = 30.0 bits (66), Expect = 4.4 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 433 VPKEFSCPISLDLMRDPVVASTGQTYDRPSI 525 +P IS +LMR+P + +G TYDR I Sbjct: 238 IPDYLCGKISFELMREPCITPSGITYDRKDI 268
>NF7O_XENLA (Q91431) Nuclear factor 7, ovary (xNF7-O)| Length = 610 Score = 30.0 bits (66), Expect = 4.4 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%) Frame = +1 Query: 439 KEFSCPISLDLMRDPVVASTGQTYDRPSIIQ-WIGE 543 +E +CP+ ++L +DPV+ + G + R I + W G+ Sbjct: 142 EELTCPLCVELFKDPVMVACGHNFCRSCIDKVWEGQ 177
>STUB1_HUMAN (Q9UNE7) STIP1 homology and U box-containing protein 1 (EC 6.3.2.-)| (STIP1 homology and U-box-containing protein 1) (Carboxy terminus of Hsp70-interacting protein) (E3 ubiquitin protein ligase CHIP) (CLL-associated antigen KW-8) (Antigen NY-C Length = 303 Score = 30.0 bits (66), Expect = 4.4 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 433 VPKEFSCPISLDLMRDPVVASTGQTYDRPSI 525 +P IS +LMR+P + +G TYDR I Sbjct: 227 IPDYLCGKISFELMREPCITPSGITYDRKDI 257
>RNF37_HUMAN (O94941) RING finger protein 37 (Ubiquitin-conjugating enzyme| 7-interacting protein 5) (U-box domain-containing protein 5) Length = 541 Score = 29.6 bits (65), Expect = 5.8 Identities = 20/68 (29%), Positives = 36/68 (52%) Frame = +1 Query: 322 SQFDPGNAKAVRYWPSAGNLQRLPSWGGGGCEDTSFSVPKEFSCPISLDLMRDPVVASTG 501 S DPG+ + PS+ LQ+L + VP+EF PI+L++M P++ +G Sbjct: 232 SDCDPGDQPESQQAPSS--LQKLA--------EIIQDVPEEFLDPITLEIMPCPMLLPSG 281 Query: 502 QTYDRPSI 525 + D+ ++ Sbjct: 282 KVIDQSTL 289
>FAPR_BACSK (Q5WFM1) Transcription factor fapR (Fatty acid and phospholipid| biosynthesis regulator) Length = 191 Score = 29.6 bits (65), Expect = 5.8 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Frame = -2 Query: 267 ILILTQDLFLEVVDFSLARCGVRDADVGEER-FERSGIRR 151 I + +++F E+VD L + DVG E FERSGI R Sbjct: 66 IALAPEEVFGEIVDLVLEERAISIFDVGPEHVFERSGIAR 105
>SIA1_CAEEL (Q965X6) Ubiquitin ligase sia-1 (EC 6.3.2.-) (Seven in absentia| homolog 1) Length = 339 Score = 29.6 bits (65), Expect = 5.8 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +1 Query: 394 SWGGGGCEDTSFSVPKEFSCPISLDLMRDP 483 S GGG +D+S + F CP+ L+ M P Sbjct: 71 SAGGGATDDSSAEILSVFECPVCLEYMLPP 100
>ARSC_ACIMU (O50595) Arsenate reductase (EC 1.20.4.1) (Arsenical pump modifier)| Length = 141 Score = 29.6 bits (65), Expect = 5.8 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = +1 Query: 142 LGQPPDTAPLKSLLSDIGISDAASCQAEIDYLEEQILSQDEDTD 273 L PP L L++D+GIS A + ++ EE L +D+ TD Sbjct: 35 LENPPSRDELVKLIADMGISVRALLRKNVEPYEELGLEEDKFTD 78
>ARSC2_ECOLI (P52147) Arsenate reductase (EC 1.20.4.1) (Arsenical pump modifier)| Length = 141 Score = 29.6 bits (65), Expect = 5.8 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = +1 Query: 142 LGQPPDTAPLKSLLSDIGISDAASCQAEIDYLEEQILSQDEDTD 273 L PP L L++D+GIS A + ++ EE L++D+ TD Sbjct: 35 LETPPSRDELLKLIADMGISVRALLRKNVEPYEELGLAEDKFTD 78
>POLN_MIDDV (P03318) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: Nonstructural protein 3 (nsP3); Nonstructural protein 3' (nsP3'); RNA-directed RNA polymerase nsP4 (EC 2.7.7.48) (Nonstructural protein 4) (nsP4)] (Fragment) Length = 994 Score = 29.3 bits (64), Expect = 7.6 Identities = 22/59 (37%), Positives = 27/59 (45%) Frame = -2 Query: 540 PDPLYD*WPVIRLAGGRHHRVAHQIQRNRAGKLLGHREGGVLAAASAPRWKPLQVPRRR 364 P+PL D V A R RVA RA E V+A APR P++ PRR+ Sbjct: 277 PEPLIDLAVVEETAPVRLERVAPVAAPRRARATPFTLEQRVVAPVPAPRTMPVRPPRRK 335
>PRP19_CAEEL (Q10051) PRP19/PSO4 homolog| Length = 492 Score = 29.3 bits (64), Expect = 7.6 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +1 Query: 445 FSCPISLDLMRDPVVAS-TGQTYDRPSIIQWIGE 543 F C IS +L DPVV+ +G +DR I+++I E Sbjct: 3 FVCGISGELTEDPVVSQVSGHIFDRRLIVKFIAE 36
>RNF5_CAEEL (Q09463) RING finger protein 5| Length = 235 Score = 29.3 bits (64), Expect = 7.6 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Frame = +1 Query: 415 EDTSFSVPKE---FSCPISLDLMRDPVVASTGQTYDRPSIIQWI 537 E TS S E F C I LD +D VV+ G + P + QW+ Sbjct: 11 EPTSSSNKDESARFECNICLDAAKDAVVSLCGHLFCWPCLSQWL 54
>DMRT1_PIG (Q9TT01) Doublesex- and mab-3-related transcription factor 1| Length = 373 Score = 29.3 bits (64), Expect = 7.6 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = -3 Query: 518 GRSYVWPVDATTGSRIKSKEIGQENSLGTEKEVSSQPPPP 399 G S+ P+ + +K + G L TE SSQPPPP Sbjct: 127 GISHPIPLPSAAELLVKRENHGSNPCLMTESSSSSQPPPP 166
>ARSC_SHIFL (P0AB97) Arsenate reductase (EC 1.20.4.1) (Arsenical pump modifier)| Length = 141 Score = 29.3 bits (64), Expect = 7.6 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = +1 Query: 142 LGQPPDTAPLKSLLSDIGISDAASCQAEIDYLEEQILSQDEDTD 273 L PP L L++D+GIS A + ++ EE L++D+ TD Sbjct: 35 LETPPTRDELVKLIADMGISVRALLRKNVEPYEELGLAEDKFTD 78
>ARSC_ECOLI (P0AB96) Arsenate reductase (EC 1.20.4.1) (Arsenical pump modifier)| Length = 141 Score = 29.3 bits (64), Expect = 7.6 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = +1 Query: 142 LGQPPDTAPLKSLLSDIGISDAASCQAEIDYLEEQILSQDEDTD 273 L PP L L++D+GIS A + ++ EE L++D+ TD Sbjct: 35 LETPPTRDELVKLIADMGISVRALLRKNVEPYEELGLAEDKFTD 78
>TRI30_MOUSE (P15533) Tripartite motif protein 30 (Down regulatory protein of| interleukin 2 receptor) Length = 496 Score = 28.9 bits (63), Expect = 9.9 Identities = 11/31 (35%), Positives = 20/31 (64%) Frame = +1 Query: 433 VPKEFSCPISLDLMRDPVVASTGQTYDRPSI 525 + +E +CPI L+L+++PV A ++ R I Sbjct: 9 IKEEVTCPICLELLKEPVSADCNHSFCRACI 39
>TRI11_MOUSE (Q99PQ2) Tripartite motif protein 11 (EC 6.3.2.-)| Length = 467 Score = 28.9 bits (63), Expect = 9.9 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +1 Query: 418 DTSFSVPKEFSCPISLDLMRDPVVASTGQTYDRPSIIQWIGE 543 D S ++ +E +C I LD DPV+ G + R I + G+ Sbjct: 5 DLSTNLQEEATCAICLDYFTDPVMTDCGHNFCRECIRRCWGQ 46
>TRI26_PANTR (Q7YR34) Tripartite motif protein 26 (Zinc finger protein 173)| Length = 539 Score = 28.9 bits (63), Expect = 9.9 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +1 Query: 430 SVPKEFSCPISLDLMRDPVVASTGQTYDR 516 S+ +E +C I LD +RDPV G + R Sbjct: 9 SLEEEVTCSICLDYLRDPVTIDCGHVFCR 37
>TRI26_HUMAN (Q12899) Tripartite motif protein 26 (Zinc finger protein 173)| (Acid finger protein) (AFP) (RING finger protein 95) Length = 539 Score = 28.9 bits (63), Expect = 9.9 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +1 Query: 430 SVPKEFSCPISLDLMRDPVVASTGQTYDR 516 S+ +E +C I LD +RDPV G + R Sbjct: 9 SLEEEVTCSICLDYLRDPVTIDCGHVFCR 37
>TRI26_RAT (P62603) Tripartite motif protein 26 (Zinc finger protein 173)| Length = 542 Score = 28.9 bits (63), Expect = 9.9 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +1 Query: 430 SVPKEFSCPISLDLMRDPVVASTGQTYDR 516 S+ +E +C I LD +RDPV G + R Sbjct: 9 SLEEEVTCSICLDYLRDPVTIDCGHVFCR 37
>TRI26_PIG (O77666) Tripartite motif protein 26 (Zinc finger protein 173)| Length = 545 Score = 28.9 bits (63), Expect = 9.9 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +1 Query: 430 SVPKEFSCPISLDLMRDPVVASTGQTYDR 516 S+ +E +C I LD +RDPV G + R Sbjct: 9 SLEEEVTCSICLDYLRDPVTIDCGHVFCR 37
>TRI26_MOUSE (Q99PN3) Tripartite motif protein 26 (Zinc finger protein 173)| Length = 545 Score = 28.9 bits (63), Expect = 9.9 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +1 Query: 430 SVPKEFSCPISLDLMRDPVVASTGQTYDR 516 S+ +E +C I LD +RDPV G + R Sbjct: 9 SLEEEVTCSICLDYLRDPVTIDCGHVFCR 37
>TRI11_HUMAN (Q96F44) Tripartite motif protein 11 (EC 6.3.2.-) (RING finger| protein 92) (BIA1 protein) Length = 468 Score = 28.9 bits (63), Expect = 9.9 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +1 Query: 418 DTSFSVPKEFSCPISLDLMRDPVVASTGQTYDRPSIIQWIGE 543 D S ++ +E +C I LD DPV+ G + R I + G+ Sbjct: 5 DLSTNLQEEATCAICLDYFTDPVMTDCGHNFCRECIRRCWGQ 46
>STAR9_HUMAN (Q9P2P6) StAR-related lipid transfer protein 9 (StARD9) (START| domain-containing protein 9) (Fragment) Length = 1820 Score = 28.9 bits (63), Expect = 9.9 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = -3 Query: 482 GSRIKSKEIGQENSLGTEKEVSSQPPPPHDGSR 384 G + +E+G L +EK+ S P PP+D S+ Sbjct: 1275 GLDMTEEELGASGDLSSEKQEQSPPQPPNDHSQ 1307
>MYO3_YEAST (P36006) Myosin-3| Length = 1273 Score = 28.9 bits (63), Expect = 9.9 Identities = 16/53 (30%), Positives = 23/53 (43%) Frame = -3 Query: 470 KSKEIGQENSLGTEKEVSSQPPPPHDGSRCKFPADGQYRTAFALPGSNCEKRL 312 K+KE +E + + PPPP G P D ++ A+ PGS L Sbjct: 1093 KNKEPLKETTATATANIPIPPPPPPMGQ----PKDPKFEAAYDFPGSGSSSEL 1141
>VGLM_RVFV (P03518) M polyprotein precursor [Contains: Nonstructural protein| NS-M; Glycoprotein G1; Glycoprotein G2] Length = 1206 Score = 28.9 bits (63), Expect = 9.9 Identities = 17/43 (39%), Positives = 22/43 (51%) Frame = -2 Query: 483 RVAHQIQRNRAGKLLGHREGGVLAAASAPRWKPLQVPRRRPIP 355 RVAH I N+ + +G EGG L + P +PR PIP Sbjct: 638 RVAHNI--NQVNREIGWMEGGQLVLGN-----PAPIPRHAPIP 673
>ARSC1_ECOLI (P08692) Arsenate reductase (EC 1.20.4.1) (Arsenical pump modifier)| Length = 141 Score = 28.9 bits (63), Expect = 9.9 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +1 Query: 142 LGQPPDTAPLKSLLSDIGISDAASCQAEIDYLEEQILSQDEDTD 273 L PP L L++D+GIS A + ++ E+ L++D+ TD Sbjct: 35 LENPPSRDELVKLIADMGISVRALLRKNVEPYEQLGLAEDKFTD 78 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.135 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,631,521 Number of Sequences: 219361 Number of extensions: 1271671 Number of successful extensions: 4574 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 4373 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4566 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
