ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd1e08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 101 bits (51), Expect = 1e-18 Identities = 81/91 (89%) Strand = Plus / Minus Query: 158 gcagcaatggtcgccatcatacctatacatgccgtacccgcacgcgtcgccggagtccta 217 |||||| |||||||| || ||||| |||||||||||||||||| |||||||||| |||| Sbjct: 12880956 gcagcagtggtcgccgtcgtacctgtacatgccgtacccgcactcgtcgccggacaccta 12880897 Query: 218 ctaccaagactactacagcccgcccgggacg 248 ||||| ||||||||||||||||| |||||| Sbjct: 12880896 ctaccgcgactactacagcccgccggggacg 12880866 Score = 54.0 bits (27), Expect = 3e-04 Identities = 58/67 (86%), Gaps = 1/67 (1%) Strand = Plus / Minus Query: 3 cggtgatgagctacaacatggtcgcagccgagagccagcgtgtcccactacgcgccgcag 62 |||||||||||||| |||||| ||||||||| | ||||| ||| |||||||||||| | Sbjct: 12881131 cggtgatgagctaccacatgg-cgcagccgacgacgagcgtctcctactacgcgccgcgg 12881073 Query: 63 ccggagc 69 ||||||| Sbjct: 12881072 ccggagc 12881066
>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06, complete sequence Length = 132243 Score = 101 bits (51), Expect = 1e-18 Identities = 81/91 (89%) Strand = Plus / Minus Query: 158 gcagcaatggtcgccatcatacctatacatgccgtacccgcacgcgtcgccggagtccta 217 |||||| |||||||| || ||||| |||||||||||||||||| |||||||||| |||| Sbjct: 119172 gcagcagtggtcgccgtcgtacctgtacatgccgtacccgcactcgtcgccggacaccta 119113 Query: 218 ctaccaagactactacagcccgcccgggacg 248 ||||| ||||||||||||||||| |||||| Sbjct: 119112 ctaccgcgactactacagcccgccggggacg 119082 Score = 54.0 bits (27), Expect = 3e-04 Identities = 58/67 (86%), Gaps = 1/67 (1%) Strand = Plus / Minus Query: 3 cggtgatgagctacaacatggtcgcagccgagagccagcgtgtcccactacgcgccgcag 62 |||||||||||||| |||||| ||||||||| | ||||| ||| |||||||||||| | Sbjct: 119347 cggtgatgagctaccacatgg-cgcagccgacgacgagcgtctcctactacgcgccgcgg 119289 Query: 63 ccggagc 69 ||||||| Sbjct: 119288 ccggagc 119282
>gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0094H06, from chromosome 3, complete sequence Length = 118075 Score = 101 bits (51), Expect = 1e-18 Identities = 81/91 (89%) Strand = Plus / Plus Query: 158 gcagcaatggtcgccatcatacctatacatgccgtacccgcacgcgtcgccggagtccta 217 |||||| |||||||| || ||||| |||||||||||||||||| |||||||||| |||| Sbjct: 58553 gcagcagtggtcgccgtcgtacctgtacatgccgtacccgcactcgtcgccggacaccta 58612 Query: 218 ctaccaagactactacagcccgcccgggacg 248 ||||| ||||||||||||||||| |||||| Sbjct: 58613 ctaccgcgactactacagcccgccggggacg 58643 Score = 54.0 bits (27), Expect = 3e-04 Identities = 58/67 (86%), Gaps = 1/67 (1%) Strand = Plus / Plus Query: 3 cggtgatgagctacaacatggtcgcagccgagagccagcgtgtcccactacgcgccgcag 62 |||||||||||||| |||||| ||||||||| | ||||| ||| |||||||||||| | Sbjct: 58378 cggtgatgagctaccacatgg-cgcagccgacgacgagcgtctcctactacgcgccgcgg 58436 Query: 63 ccggagc 69 ||||||| Sbjct: 58437 ccggagc 58443
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 101 bits (51), Expect = 1e-18 Identities = 81/91 (89%) Strand = Plus / Minus Query: 158 gcagcaatggtcgccatcatacctatacatgccgtacccgcacgcgtcgccggagtccta 217 |||||| |||||||| || ||||| |||||||||||||||||| |||||||||| |||| Sbjct: 12877719 gcagcagtggtcgccgtcgtacctgtacatgccgtacccgcactcgtcgccggacaccta 12877660 Query: 218 ctaccaagactactacagcccgcccgggacg 248 ||||| ||||||||||||||||| |||||| Sbjct: 12877659 ctaccgcgactactacagcccgccggggacg 12877629 Score = 54.0 bits (27), Expect = 3e-04 Identities = 58/67 (86%), Gaps = 1/67 (1%) Strand = Plus / Minus Query: 3 cggtgatgagctacaacatggtcgcagccgagagccagcgtgtcccactacgcgccgcag 62 |||||||||||||| |||||| ||||||||| | ||||| ||| |||||||||||| | Sbjct: 12877894 cggtgatgagctaccacatgg-cgcagccgacgacgagcgtctcctactacgcgccgcgg 12877836 Query: 63 ccggagc 69 ||||||| Sbjct: 12877835 ccggagc 12877829
>dbj|AK066080.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051K22, full insert sequence Length = 1071 Score = 101 bits (51), Expect = 1e-18 Identities = 81/91 (89%) Strand = Plus / Plus Query: 158 gcagcaatggtcgccatcatacctatacatgccgtacccgcacgcgtcgccggagtccta 217 |||||| |||||||| || ||||| |||||||||||||||||| |||||||||| |||| Sbjct: 594 gcagcagtggtcgccgtcgtacctgtacatgccgtacccgcactcgtcgccggacaccta 653 Query: 218 ctaccaagactactacagcccgcccgggacg 248 ||||| ||||||||||||||||| |||||| Sbjct: 654 ctaccgcgactactacagcccgccggggacg 684 Score = 54.0 bits (27), Expect = 3e-04 Identities = 58/67 (86%), Gaps = 1/67 (1%) Strand = Plus / Plus Query: 3 cggtgatgagctacaacatggtcgcagccgagagccagcgtgtcccactacgcgccgcag 62 |||||||||||||| |||||| ||||||||| | ||||| ||| |||||||||||| | Sbjct: 419 cggtgatgagctaccacatgg-cgcagccgacgacgagcgtctcctactacgcgccgcgg 477 Query: 63 ccggagc 69 ||||||| Sbjct: 478 ccggagc 484
>gb|AY108718.1| Zea mays PCO111663 mRNA sequence Length = 435 Score = 60.0 bits (30), Expect = 4e-06 Identities = 85/102 (83%), Gaps = 6/102 (5%) Strand = Plus / Plus Query: 160 agcaatggtcgccatcatacctatacatgccgtacccgcacgc---gtcgccggagtcct 216 |||| |||||||| || ||||| |||||||||||||||||||| | |||||||| | | Sbjct: 82 agcagtggtcgccgtcgtacctgtacatgccgtacccgcacgccgcggcgccggagcctt 141 Query: 217 actaccaa---gactactacagcccgcccgggacgaacgcgt 255 ||||||| ||||||||| |||||||||||| | |||||| Sbjct: 142 actaccagcaggactactacggcccgcccgggatgcacgcgt 183
>gb|AC002551.1|HUAC002551 Human Chromosome 16 BAC clone CIT987SK-A-951C11, complete sequence Length = 114411 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 gcagcactcaccggcgcagcaggc 133 ||||||| |||||||||||||||| Sbjct: 71899 gcagcacacaccggcgcagcaggc 71876
>gb|BC109639.1| Bos taurus transcription factor-like 1, mRNA (cDNA clone MGC:134217 IMAGE:8050148), complete cds Length = 1325 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 138 tcccagcacgcgcagccaatgcag 161 |||||||||| ||||||||||||| Sbjct: 776 tcccagcacgggcagccaatgcag 753
>ref|NM_001015658.1| Bos taurus transcription factor-like 1 (TCFL1), mRNA Length = 1347 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 138 tcccagcacgcgcagccaatgcag 161 |||||||||| ||||||||||||| Sbjct: 811 tcccagcacgggcagccaatgcag 788
>gb|BT020964.1| Bos taurus transcription factor-like 1 (TCFL1), mRNA, complete cds Length = 1347 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 138 tcccagcacgcgcagccaatgcag 161 |||||||||| ||||||||||||| Sbjct: 811 tcccagcacgggcagccaatgcag 788 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,259,210 Number of Sequences: 3902068 Number of extensions: 1259210 Number of successful extensions: 23515 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23467 Number of HSP's gapped (non-prelim): 43 length of query: 307 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 285 effective length of database: 17,147,199,772 effective search space: 4886951935020 effective search space used: 4886951935020 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
