ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd1c24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK073118.1| Oryza sativa (japonica cultivar-group) cDNA clon... 305 9e-80
2gb|AY109118.1| Zea mays PCO087887 mRNA sequence 238 2e-59
3ref|XM_463276.1| Oryza sativa (japonica cultivar-group), predic... 141 3e-30
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
5dbj|AP003217.3| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
6dbj|AP003054.2| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
7ref|XM_959562.1| Neurospora crassa OR74A hypothetical protein (N... 46 0.13
8ref|XM_329222.1| Neurospora crassa OR74A hypothetical protein (N... 46 0.13
9gb|AC144731.15| Medicago truncatula clone mth2-5g18, complete se... 46 0.13
10emb|AL442164.1|NCB2J23 Neurospora crassa DNA linkage group I BAC... 46 0.13
11gb|AF542528.2| Cryptococcus neoformans var. grubii strain 125.91... 44 0.50
12gb|AC095024.2| Sus scrofa clone RP44-512L18, complete sequence 44 0.50
13gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome 42 2.0
14ref|XM_449472.1| Candida glabrata CBS138 hypothetical protein (C... 42 2.0
15emb|Z83847.1|HS496C20 Human DNA sequence from clone RP3-496C20 o... 42 2.0
16emb|CR380959.1| Candida glabrata strain CBS138 chromosome M comp... 42 2.0
17gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 42 2.0
18gb|AC022598.10| Homo sapiens chromosome 8, clone RP11-119K7, com... 42 2.0
19gb|AC024367.7| Homo sapiens chromosome 8, clone RP11-75G10, comp... 42 2.0
20dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
21dbj|AP005295.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
22gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 7.9
23gb|AE017308.1| Mycoplasma mobile 163K complete genome 40 7.9
24ref|XM_567624.1| Cryptococcus neoformans var. neoformans JEC21 e... 40 7.9
25gb|AC124691.4| Mus musculus BAC clone RP24-158O8 from chromosome... 40 7.9
26emb|AL589701.9| Mouse DNA sequence from clone RP23-202F3 on chro... 40 7.9
27gb|AC018719.4| Homo sapiens BAC clone RP11-573N21 from Xq23, com... 40 7.9
28gb|AC099521.2| Homo sapiens chromosome 16 clone RP11-71L14, comp... 40 7.9
29gb|AC024903.17| Homo sapiens 16 BAC RP11-71L14 (Roswell Park Can... 40 7.9
30gb|AF003530.2|AF003530 Homo sapiens homeobox protein CDX4 (CDX4)... 40 7.9
31gb|AC008569.7| Homo sapiens chromosome 19 clone CTC-548K16, comp... 40 7.9
32gb|AC020978.10| Homo sapiens chromosome 16 clone RP11-96D1, comp... 40 7.9
33gb|AC016673.5| Homo sapiens BAC clone RP11-17N4 from 2, complete... 40 7.9
34dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 7.9
35dbj|AP003046.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
36dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
37emb|AL049836.3|CNS0000H Human chromosome 14 DNA sequence BAC R-1... 40 7.9 
>dbj|AK073118.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033011J18, full
           insert sequence
          Length = 2034

 Score =  305 bits (154), Expect = 9e-80
 Identities = 322/378 (85%)
 Strand = Plus / Plus

                                                                       
Query: 189 ctccgcgacaccttcttcccccgagacccctccgagaagtctgcgtccctccgcgcctgc 248
           ||||||||||||||||||||||||||||||  ||||||| | ||| |||||||||||  |
Sbjct: 437 ctccgcgacaccttcttcccccgagaccccgtcgagaaggccgcggccctccgcgccctc 496

                                                                       
Query: 249 gctgacgccgccctgggagtcctcgattccctgccccccgagcaaagaaaatccccacaa 308
           || |||| |||||| |  |||||||| ||||| || || |||||||| ||| | || |||
Sbjct: 497 gccgacgacgccctcgccgtcctcgactccctcccgccagagcaaaggaaaacaccgcaa 556

                                                                       
Query: 309 gagcgtgttatttatgaatttctgatggggaaaatactcgatgtcttcccagattattgt 368
            | |||| | ||||||||||  ||| ||| |||||| | ||||| ||||| ||||||  |
Sbjct: 557 caacgtgctgtttatgaattcttgaggggaaaaatattggatgttttccctgattatcat 616

                                                                       
Query: 369 aaggaggctgaagagcatttatccaaagcagtaaagctgaatccatctcttgtggatgca 428
           |||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 617 aaggaggctgaagatcatttatccaaagcagtaaagttgaatccatctcttgtagatgca 676

                                                                       
Query: 429 tggctatgtttgggtaactgcatctggaagaagggaaatctggcatcagcaaggaactgt 488
           ||||| ||||||||||||||||| |||||||| ||  | ||||  ||||||| |||||| 
Sbjct: 677 tggctgtgtttgggtaactgcatatggaagaaaggggacctggattcagcaatgaactgc 736

                                                                       
Query: 489 tttttgttagcactaagtaagggtgcagataagaaaatactatgtcaactctcaatgctt 548
           ||||  |||||| |||| ||||| ||||| |||||||||||||| || ||||||||||||
Sbjct: 737 ttttcattagcattaagcaagggggcagacaagaaaatactatgccagctctcaatgctt 796

                             
Query: 549 gaaaggagtatggctcaa 566
           ||||| ||||||||||||
Sbjct: 797 gaaagaagtatggctcaa 814
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>gb|AY109118.1| Zea mays PCO087887 mRNA sequence
          Length = 615

 Score =  238 bits (120), Expect = 2e-59
 Identities = 216/248 (87%)
 Strand = Plus / Plus

                                                                       
Query: 319 tttatgaatttctgatggggaaaatactcgatgtcttcccagattattgtaaggaggctg 378
           ||||||||||| ||| ||| |||||||| |||||||| || ||||||  |||||||||||
Sbjct: 300 tttatgaatttttgaggggaaaaatactggatgtctttcctgattatcataaggaggctg 359

                                                                       
Query: 379 aagagcatttatccaaagcagtaaagctgaatccatctcttgtggatgcatggctatgtt 438
           |||| ||||||||||||||||||||| |||| ||||||||||| ||||||||| ||||||
Sbjct: 360 aagatcatttatccaaagcagtaaagttgaacccatctcttgtagatgcatggttatgtt 419

                                                                       
Query: 439 tgggtaactgcatctggaagaagggaaatctggcatcagcaaggaactgttttttgttag 498
           ||||||||||||| |||||||||||  ||||  |  |||||| ||| |||||||  ||||
Sbjct: 420 tgggtaactgcatttggaagaagggggatctatctgcagcaaagaattgtttttcattag 479

                                                                       
Query: 499 cactaagtaagggtgcagataagaaaatactatgtcaactctcaatgcttgaaaggagta 558
           ||||||| |||||| |||||||||||||||| || ||  |||| ||||||||||| ||||
Sbjct: 480 cactaagcaagggttcagataagaaaatactgtgccagatctccatgcttgaaagaagta 539

                   
Query: 559 tggctcaa 566
           ||||||||
Sbjct: 540 tggctcaa 547
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>ref|XM_463276.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1632

 Score =  141 bits (71), Expect = 3e-30
 Identities = 176/211 (83%)
 Strand = Plus / Plus

                                                                       
Query: 189 ctccgcgacaccttcttcccccgagacccctccgagaagtctgcgtccctccgcgcctgc 248
           ||||||||||||||||||||||||||||||  ||||||| | ||| |||||||||||  |
Sbjct: 520 ctccgcgacaccttcttcccccgagaccccgtcgagaaggccgcggccctccgcgccctc 579

                                                                       
Query: 249 gctgacgccgccctgggagtcctcgattccctgccccccgagcaaagaaaatccccacaa 308
           || |||| |||||| |  |||||||| ||||| || || |||||||| ||| | || |||
Sbjct: 580 gccgacgacgccctcgccgtcctcgactccctcccgccagagcaaaggaaaacaccgcaa 639

                                                                       
Query: 309 gagcgtgttatttatgaatttctgatggggaaaatactcgatgtcttcccagattattgt 368
            | |||| | ||||||||||  ||| ||| |||||| | ||||| ||||| ||||||  |
Sbjct: 640 caacgtgctgtttatgaattcttgaggggaaaaatattggatgttttccctgattatcat 699

                                          
Query: 369 aaggaggctgaagagcatttatccaaagcag 399
           |||||||||||||| ||||||||||||||||
Sbjct: 700 aaggaggctgaagatcatttatccaaagcag 730



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                 
Query: 513 gcagataagaaaatactatgtcaactctcaatgcttgaaaggagtatggctcaa 566
           ||||| |||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct: 733 gcagacaagaaaatactatgccagctctcaatgcttgaaagaagtatggctcaa 786
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 96/112 (85%)
 Strand = Plus / Minus

                                                                            
Query: 399      gtaaagctgaatccatctcttgtggatgcatggctatgtttgggtaactgcatctggaag 458
                |||||| |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 17620932 gtaaagttgaatccatctcttgtagatgcatggctgtgtttgggtaactgcatatggaag 17620873

                                                                    
Query: 459      aagggaaatctggcatcagcaaggaactgttttttgttagcactaagtaagg 510
                || ||  | ||||  ||||||| |||||| ||||  |||||| |||| ||||
Sbjct: 17620872 aaaggggacctggattcagcaatgaactgcttttcattagcattaagcaagg 17620821



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 79/92 (85%)
 Strand = Plus / Minus

                                                                            
Query: 189      ctccgcgacaccttcttcccccgagacccctccgagaagtctgcgtccctccgcgcctgc 248
                ||||||||||||||||||||||||||||||  ||||||| | ||| |||||||||||  |
Sbjct: 17622628 ctccgcgacaccttcttcccccgagaccccgtcgagaaggccgcggccctccgcgccctc 17622569

                                                
Query: 249      gctgacgccgccctgggagtcctcgattccct 280
                || |||| |||||| |  |||||||| |||||
Sbjct: 17622568 gccgacgacgccctcgccgtcctcgactccct 17622537



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 72/83 (86%)
 Strand = Plus / Minus

                                                                            
Query: 319      tttatgaatttctgatggggaaaatactcgatgtcttcccagattattgtaaggaggctg 378
                ||||||||||  ||| ||| |||||| | ||||| ||||| ||||||  |||||||||||
Sbjct: 17621099 tttatgaattcttgaggggaaaaatattggatgttttccctgattatcataaggaggctg 17621040

                                       
Query: 379      aagagcatttatccaaagcagta 401
                |||| ||||||||||||||||||
Sbjct: 17621039 aagatcatttatccaaagcagta 17621017



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                           
Query: 508      agggtgcagataagaaaatactatgtcaactctcaatgcttgaaaggagtatggctcaa 566
                |||| ||||| |||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct: 17620745 agggggcagacaagaaaatactatgccagctctcaatgcttgaaagaagtatggctcaa 17620687



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 421     tggatgcatggctatgtttg 440
               ||||||||||||||||||||
Sbjct: 1267615 tggatgcatggctatgtttg 1267596
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>dbj|AP003217.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:OSJNBa0094H06
          Length = 147245

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 96/112 (85%)
 Strand = Plus / Minus

                                                                        
Query: 399  gtaaagctgaatccatctcttgtggatgcatggctatgtttgggtaactgcatctggaag 458
            |||||| |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 2467 gtaaagttgaatccatctcttgtagatgcatggctgtgtttgggtaactgcatatggaag 2408

                                                                
Query: 459  aagggaaatctggcatcagcaaggaactgttttttgttagcactaagtaagg 510
            || ||  | ||||  ||||||| |||||| ||||  |||||| |||| ||||
Sbjct: 2407 aaaggggacctggattcagcaatgaactgcttttcattagcattaagcaagg 2356



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 79/92 (85%)
 Strand = Plus / Minus

                                                                        
Query: 189  ctccgcgacaccttcttcccccgagacccctccgagaagtctgcgtccctccgcgcctgc 248
            ||||||||||||||||||||||||||||||  ||||||| | ||| |||||||||||  |
Sbjct: 4163 ctccgcgacaccttcttcccccgagaccccgtcgagaaggccgcggccctccgcgccctc 4104

                                            
Query: 249  gctgacgccgccctgggagtcctcgattccct 280
            || |||| |||||| |  |||||||| |||||
Sbjct: 4103 gccgacgacgccctcgccgtcctcgactccct 4072



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 72/83 (86%)
 Strand = Plus / Minus

                                                                        
Query: 319  tttatgaatttctgatggggaaaatactcgatgtcttcccagattattgtaaggaggctg 378
            ||||||||||  ||| ||| |||||| | ||||| ||||| ||||||  |||||||||||
Sbjct: 2634 tttatgaattcttgaggggaaaaatattggatgttttccctgattatcataaggaggctg 2575

                                   
Query: 379  aagagcatttatccaaagcagta 401
            |||| ||||||||||||||||||
Sbjct: 2574 aagatcatttatccaaagcagta 2552



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                       
Query: 508  agggtgcagataagaaaatactatgtcaactctcaatgcttgaaaggagtatggctcaa 566
            |||| ||||| |||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct: 2280 agggggcagacaagaaaatactatgccagctctcaatgcttgaaagaagtatggctcaa 2222
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>dbj|AP003054.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0436D06
          Length = 148246

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 96/112 (85%)
 Strand = Plus / Minus

                                                                          
Query: 399    gtaaagctgaatccatctcttgtggatgcatggctatgtttgggtaactgcatctggaag 458
              |||||| |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 138504 gtaaagttgaatccatctcttgtagatgcatggctgtgtttgggtaactgcatatggaag 138445

                                                                  
Query: 459    aagggaaatctggcatcagcaaggaactgttttttgttagcactaagtaagg 510
              || ||  | ||||  ||||||| |||||| ||||  |||||| |||| ||||
Sbjct: 138444 aaaggggacctggattcagcaatgaactgcttttcattagcattaagcaagg 138393



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 79/92 (85%)
 Strand = Plus / Minus

                                                                          
Query: 189    ctccgcgacaccttcttcccccgagacccctccgagaagtctgcgtccctccgcgcctgc 248
              ||||||||||||||||||||||||||||||  ||||||| | ||| |||||||||||  |
Sbjct: 140200 ctccgcgacaccttcttcccccgagaccccgtcgagaaggccgcggccctccgcgccctc 140141

                                              
Query: 249    gctgacgccgccctgggagtcctcgattccct 280
              || |||| |||||| |  |||||||| |||||
Sbjct: 140140 gccgacgacgccctcgccgtcctcgactccct 140109



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 72/83 (86%)
 Strand = Plus / Minus

                                                                          
Query: 319    tttatgaatttctgatggggaaaatactcgatgtcttcccagattattgtaaggaggctg 378
              ||||||||||  ||| ||| |||||| | ||||| ||||| ||||||  |||||||||||
Sbjct: 138671 tttatgaattcttgaggggaaaaatattggatgttttccctgattatcataaggaggctg 138612

                                     
Query: 379    aagagcatttatccaaagcagta 401
              |||| ||||||||||||||||||
Sbjct: 138611 aagatcatttatccaaagcagta 138589



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                         
Query: 508    agggtgcagataagaaaatactatgtcaactctcaatgcttgaaaggagtatggctcaa 566
              |||| ||||| |||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct: 138317 agggggcagacaagaaaatactatgccagctctcaatgcttgaaagaagtatggctcaa 138259
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>ref|XM_959562.1| Neurospora crassa OR74A hypothetical protein (NCU02033.1) partial
            mRNA
          Length = 2274

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 143  gacgccgctggagaaggtggcggatac 169
            ||||||| |||||||||||||||||||
Sbjct: 1942 gacgccgatggagaaggtggcggatac 1968
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>ref|XM_329222.1| Neurospora crassa OR74A hypothetical protein (NCU02033.1) partial
            mRNA
          Length = 2274

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 143  gacgccgctggagaaggtggcggatac 169
            ||||||| |||||||||||||||||||
Sbjct: 1942 gacgccgatggagaaggtggcggatac 1968
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>gb|AC144731.15| Medicago truncatula clone mth2-5g18, complete sequence
          Length = 115175

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 68/83 (81%)
 Strand = Plus / Plus

                                                                         
Query: 375   gctgaagagcatttatccaaagcagtaaagctgaatccatctcttgtggatgcatggcta 434
             ||||| || ||| |||| ||||| || ||| |||||||||||||||  ||||| ||| ||
Sbjct: 61881 gctgaggatcatctatcaaaagctgtcaagttgaatccatctcttgcagatgcttggtta 61940

                                    
Query: 435   tgtttgggtaactgcatctggaa 457
             ||||| || ||||| || |||||
Sbjct: 61941 tgtttaggaaactgtatttggaa 61963
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>emb|AL442164.1|NCB2J23 Neurospora crassa DNA linkage group I BAC clone B2J23
          Length = 65725

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 143   gacgccgctggagaaggtggcggatac 169
             ||||||| |||||||||||||||||||
Sbjct: 36873 gacgccgatggagaaggtggcggatac 36899
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>gb|AF542528.2| Cryptococcus neoformans var. grubii strain 125.91 mating type a locus,
              complete sequence
          Length = 153973

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 445    actgcatctggaagaagggaaa 466
              ||||||||||||||||||||||
Sbjct: 105060 actgcatctggaagaagggaaa 105039
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>gb|AC095024.2| Sus scrofa clone RP44-512L18, complete sequence
          Length = 117916

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 109   agcaggggcaggggaaccaggaggag 134
             ||||||| ||||||||||||||||||
Sbjct: 14892 agcagggccaggggaaccaggaggag 14917
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>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 469    tggcatcagcaaggaactgtttttt 493
              ||||||||||||||| |||||||||
Sbjct: 421679 tggcatcagcaaggagctgtttttt 421703
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>ref|XM_449472.1| Candida glabrata CBS138 hypothetical protein (CAGL0M02893g) partial
            mRNA
          Length = 2442

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 151  tggagaaggtggcggatacag 171
            |||||||||||||||||||||
Sbjct: 1853 tggagaaggtggcggatacag 1873
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>emb|Z83847.1|HS496C20 Human DNA sequence from clone RP3-496C20 on chromosome 22, complete
             sequence
          Length = 69964

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 101   agagcggcagcaggggcaggg 121
             |||||||||||||||||||||
Sbjct: 25545 agagcggcagcaggggcaggg 25525
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>emb|CR380959.1| Candida glabrata strain CBS138 chromosome M complete sequence
          Length = 1400893

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 151    tggagaaggtggcggatacag 171
              |||||||||||||||||||||
Sbjct: 328190 tggagaaggtggcggatacag 328210
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>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 31      cgccgcccagggaaacgatga 51
               |||||||||||||||||||||
Sbjct: 1861237 cgccgcccagggaaacgatga 1861257



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 31     cgccgcccagggaaacgatga 51
              |||||||||||||||||||||
Sbjct: 312778 cgccgcccagggaaacgatga 312798
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>gb|AC022598.10| Homo sapiens chromosome 8, clone RP11-119K7, complete sequence
          Length = 155323

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 415    ctcttgtggatgcatggctatgttt 439
              |||||||||||||||||| ||||||
Sbjct: 134426 ctcttgtggatgcatggcaatgttt 134450
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>gb|AC024367.7| Homo sapiens chromosome 8, clone RP11-75G10, complete sequence
          Length = 170022

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 415   ctcttgtggatgcatggctatgttt 439
             |||||||||||||||||| ||||||
Sbjct: 23339 ctcttgtggatgcatggcaatgttt 23363
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 503      aagtaagggtgcagataagaaaata 527
                ||||||||||||||||||| |||||
Sbjct: 33992760 aagtaagggtgcagataagtaaata 33992784



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 421      tggatgcatggctatgtttg 440
                ||||||||||||||||||||
Sbjct: 28248259 tggatgcatggctatgtttg 28248240
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>dbj|AP005295.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1695_D07
          Length = 110585

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 503   aagtaagggtgcagataagaaaata 527
             ||||||||||||||||||| |||||
Sbjct: 20035 aagtaagggtgcagataagtaaata 20059
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>gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 11, complete
              sequence
          Length = 1019846

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 102    gagcggcagcaggggcaggg 121
              ||||||||||||||||||||
Sbjct: 200937 gagcggcagcaggggcaggg 200918
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>gb|AE017308.1| Mycoplasma mobile 163K complete genome
          Length = 777079

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 533    tcaactctcaatgcttgaaa 552
              ||||||||||||||||||||
Sbjct: 472601 tcaactctcaatgcttgaaa 472582
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>ref|XM_567624.1| Cryptococcus neoformans var. neoformans JEC21 endocytosis-related
            protein (CNK00600) partial mRNA
          Length = 4870

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 102  gagcggcagcaggggcaggg 121
            ||||||||||||||||||||
Sbjct: 1552 gagcggcagcaggggcaggg 1533
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>gb|AC124691.4| Mus musculus BAC clone RP24-158O8 from chromosome 15, complete sequence
          Length = 176829

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 407    gaatccatctcttgtggatg 426
              ||||||||||||||||||||
Sbjct: 125384 gaatccatctcttgtggatg 125365
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>emb|AL589701.9| Mouse DNA sequence from clone RP23-202F3 on chromosome 13 Contains a
              novel gene and the 3' end of a novel gene (1190005B03Rik),
              complete sequence
          Length = 219200

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    gtggaggagctgtacagtct 190
              ||||||||||||||||||||
Sbjct: 169892 gtggaggagctgtacagtct 169873
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>gb|AC018719.4| Homo sapiens BAC clone RP11-573N21 from Xq23, complete sequence
          Length = 168210

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 292   aaagaaaatccccacaagag 311
             ||||||||||||||||||||
Sbjct: 71881 aaagaaaatccccacaagag 71900
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>gb|AC099521.2| Homo sapiens chromosome 16 clone RP11-71L14, complete sequence
          Length = 167245

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 327  tttctgatggggaaaatact 346
            ||||||||||||||||||||
Sbjct: 4110 tttctgatggggaaaatact 4129
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>gb|AC024903.17| Homo sapiens 16 BAC RP11-71L14 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 167238

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 327  tttctgatggggaaaatact 346
            ||||||||||||||||||||
Sbjct: 4109 tttctgatggggaaaatact 4128
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>gb|AF003530.2|AF003530 Homo sapiens homeobox protein CDX4 (CDX4) gene, complete cds and
             flanking repeat regions
          Length = 97968

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 454   ggaagaagggaaatctggca 473
             ||||||||||||||||||||
Sbjct: 95587 ggaagaagggaaatctggca 95606
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>gb|AC008569.7| Homo sapiens chromosome 19 clone CTC-548K16, complete sequence
          Length = 227245

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    ggggcaggggaaccaggagg 132
              ||||||||||||||||||||
Sbjct: 210548 ggggcaggggaaccaggagg 210567
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>gb|AC020978.10| Homo sapiens chromosome 16 clone RP11-96D1, complete sequence
          Length = 164293

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 327   tttctgatggggaaaatact 346
             ||||||||||||||||||||
Sbjct: 17106 tttctgatggggaaaatact 17087
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>gb|AC016673.5| Homo sapiens BAC clone RP11-17N4 from 2, complete sequence
          Length = 185332

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 113    ggggcaggggaaccaggagg 132
              ||||||||||||||||||||
Sbjct: 168353 ggggcaggggaaccaggagg 168334
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 133     aggcggggtggacgccgctg 152
               ||||||||||||||||||||
Sbjct: 3850699 aggcggggtggacgccgctg 3850680
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>dbj|AP003046.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0445D12
          Length = 140952

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 421   tggatgcatggctatgtttg 440
             ||||||||||||||||||||
Sbjct: 61269 tggatgcatggctatgtttg 61250
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>dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1743_B12
          Length = 175645

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 421   tggatgcatggctatgtttg 440
             ||||||||||||||||||||
Sbjct: 40016 tggatgcatggctatgtttg 39997
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>emb|AL049836.3|CNS0000H Human chromosome 14 DNA sequence BAC R-1029J19 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 207774

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 99    ccagagcggcagcaggggcagggg 122
             ||||||| ||||||||||||||||
Sbjct: 71534 ccagagccgcagcaggggcagggg 71511


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,287,460
Number of Sequences: 3902068
Number of extensions: 5287460
Number of successful extensions: 100011
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99670
Number of HSP's gapped (non-prelim): 340
length of query: 580
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 557
effective length of database: 17,143,297,704
effective search space: 9548816821128
effective search space used: 9548816821128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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