ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd0h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YEE9_SCHPO (O13825) Hypothetical protein C19A8.09 in chromosome I 53 3e-07
2YOS1_YEAST (Q3E834) Protein YOS1 (YIP one suppressor protein 1) 42 5e-04
3OL143_MOUSE (P34985) Olfactory receptor 143 (Olfactory receptor ... 30 2.7
4ZBTB4_HUMAN (Q9P1Z0) Zinc finger and BTB domain-containing prote... 30 3.5
5BOI2_YEAST (P39969) Protein BOI2 (Protein BEB1) 29 4.5
6Y392_BUCBP (Q89AC2) Hypothetical UPF0004 protein bbp_392 28 7.7

>YEE9_SCHPO (O13825) Hypothetical protein C19A8.09 in chromosome I|
          Length = 81

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
 Frame = +1

Query: 130 NSLAILNEDRFLGPRGWSMSEVSGNGQTK-SLKGQIVGLIYATQ-FLRMPLIALNVLIIV 303
           N++AIL+EDRFLG  GWS S   G G  + ++K +I+ LI A +  +  PLIA+N ++IV
Sbjct: 16  NAVAILSEDRFLGRIGWSQSAALGFGDRQDTIKSRILHLIRAIRTVMTFPLIAINTIVIV 75

Query: 304 VKMVSG 321
             +V G
Sbjct: 76  YNLVLG 81



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>YOS1_YEAST (Q3E834) Protein YOS1 (YIP one suppressor protein 1)|
          Length = 85

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
 Frame = +1

Query: 130 NSLAILNEDRFLGPRGWSMSE----VSGNGQTKSLKGQIVGLIYATQ-FLRMPLIALNVL 294
           N++A+L+E+RFL   G   S     V G  Q  + K ++V LI A Q  LR+PLI +N+L
Sbjct: 18  NAVAVLSEERFLRRIGLGRSNDETPVFGQDQNTT-KSKVVQLIGAVQTLLRIPLIGINIL 76

Query: 295 IIVVKMVSG 321
           +IV +++ G
Sbjct: 77  VIVYELLLG 85



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>OL143_MOUSE (P34985) Olfactory receptor 143 (Olfactory receptor 7A) (Olfactory|
           receptor 170-6) (Odorant receptor K18)
          Length = 313

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 325 GSFSCLCCWVDLISVSSIMYNLIMFKTCGKGRSR*L-ECG 441
           GS   LCC + LIS + I++N+I   + GKG S+ L  CG
Sbjct: 207 GSAIILCCLIILISYAMILFNIIHMSS-GKGWSKALGTCG 245



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>ZBTB4_HUMAN (Q9P1Z0) Zinc finger and BTB domain-containing protein 4|
           (KAISO-like zinc finger protein 1) (KAISO-L1)
          Length = 1013

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 135 RICKKQKTLQQHPQAHXSDRPRGVP 61
           ++CK    L +H Q H ++RP G P
Sbjct: 772 KVCKTAAALSRHGQRHAAERPGGTP 796



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>BOI2_YEAST (P39969) Protein BOI2 (Protein BEB1)|
          Length = 1040

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 24/82 (29%), Positives = 36/82 (43%)
 Frame = -2

Query: 381 HNAGN*NQINPTAETRERASA*HHFHNNDKNIKRYQGHPQKLSGIDEPHDLPLQRLCLPI 202
           +NA   NQ+ P A   +RAS              Y+GH +K S      DLP Q+  +P 
Sbjct: 345 NNANIYNQLMPPANVDQRAS--------------YRGHVRKTS--QSLEDLPSQQNFIPT 388

Query: 201 S*NFRHAPSPGTKKAVFIQDSQ 136
             N R++ +   +    + DSQ
Sbjct: 389 PRNTRNSSASKHRPKSLVFDSQ 410



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>Y392_BUCBP (Q89AC2) Hypothetical UPF0004 protein bbp_392|
          Length = 445

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/39 (38%), Positives = 26/39 (66%)
 Frame = -2

Query: 225 LQRLCLPIS*NFRHAPSPGTKKAVFIQDSQRICKKQKTL 109
           ++ L + +S +F ++P PGT  A  +QD+  +C+KQK L
Sbjct: 326 IKDLNIDMSYSFIYSPRPGTP-ASELQDNVTLCEKQKRL 363


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,006,909
Number of Sequences: 219361
Number of extensions: 1252065
Number of successful extensions: 3503
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3500
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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