ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd0h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 234 2e-58
2dbj|AP005811.3| Oryza sativa (japonica cultivar-group) genomic D... 234 2e-58
3ref|XM_450543.1| Oryza sativa (japonica cultivar-group), mRNA 232 8e-58
4gb|AY107694.1| Zea mays PCO129709 mRNA sequence 210 3e-51
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 198 1e-47
6gb|AC132215.1| Genomic sequence for Oryza sativa, Nipponbare str... 198 1e-47
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 198 1e-47
8dbj|AK099570.1| Oryza sativa (japonica cultivar-group) cDNA clon... 198 1e-47
9dbj|AK063044.1| Oryza sativa (japonica cultivar-group) cDNA clon... 198 1e-47
10emb|AL589699.4| Mouse DNA sequence from clone RP23-92G13 on chro... 44 0.38
11gb|AC145913.3| Gallus gallus BAC clone CH261-50N9 from chromosom... 42 1.5
12emb|CR956648.9| Pig DNA sequence from clone CH242-155F23 on chro... 42 1.5
13gb|AC124228.16| Mus musculus chromosome 5, clone RP23-345O14, co... 40 6.0
14gb|AC113285.9| Mus musculus chromosome 5, clone RP23-407I6, comp... 40 6.0
15gb|AC132102.3| Mus musculus BAC clone RP24-360K9 from chromosome... 40 6.0
16gb|AC119803.10| Mus musculus chromosome 6, clone RP23-124H21, co... 40 6.0
17gb|AY833270.1| Lontra canadensis microsatellite RIO19 sequence 40 6.0
18emb|CR855258.6| Zebrafish DNA sequence from clone DKEY-2N12 in l... 40 6.0
19emb|AL662812.12| Mouse DNA sequence from clone RP23-48A2 on chro... 40 6.0
20emb|AL592065.7| Mouse DNA sequence from clone RP23-50E4 on chrom... 40 6.0
21gb|AC162465.3| Mus musculus 6 BAC RP24-108G5 (Roswell Park Cance... 40 6.0
22gb|AC105361.2| Homo sapiens chromosome , clone RP11-170D6, compl... 40 6.0
23gb|AC097521.2| Homo sapiens BAC clone RP11-565A3 from 4, complet... 40 6.0
24gb|AC087714.6| Homo sapiens chromosome 17, clone RP11-167A1, com... 40 6.0
25dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
26emb|BX324171.9| Zebrafish DNA sequence from clone DKEYP-57C9 in ... 40 6.0
27dbj|AP002768.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 6.0
28gb|AC153853.4| Mus musculus BAC RP23-341J13 (Roswell Park Cance... 40 6.0
29gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
30emb|AL772423.4|CNS08CA1 Oryza sativa chromosome 12, . BAC OJ1058... 40 6.0
31gb|AC150895.2| Mus musculus BAC clone RP24-274J5 from 7, complet... 40 6.0
32emb|AL772344.4| Mouse DNA sequence from clone RP23-235J15 on chr... 40 6.0
33dbj|AP001939.3| Homo sapiens genomic DNA, chromosome 4q22-q24, c... 40 6.0
34dbj|AP001816.2| Homo sapiens genomic DNA, chromosome 4q22-q24, c... 40 6.0

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score =  234 bits (118), Expect = 2e-58
 Identities = 208/238 (87%)
 Strand = Plus / Plus

                                                                           
Query: 88      atgggcttgtggatgctgctggagggttttttgcttcttgcaaattctttggctatcctg 147
               |||||| |||||| | |||||||||| ||||||||||| |||||| | || || || || 
Sbjct: 9578448 atgggcctgtggacgttgctggagggctttttgcttctcgcaaatgcattagcgatacta 9578507

                                                                           
Query: 148     aatgaagaccgctttcttggtcccaggggatggagcatgtctgaagtttcaggaaatggg 207
               |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| 
Sbjct: 9578508 aatgaagaccgctttcttggccccagaggatggagcatgtctgaagtctcaggaaatgga 9578567

                                                                           
Query: 208     caaacaaagtcgttgaaggggcagatcgtggggctcatctatgccactcagtttctgcgg 267
               ||||| |||||  ||||||| ||||| || ||||||||||||||||| |||||  || ||
Sbjct: 9578568 caaaccaagtcactgaagggtcagattgtagggctcatctatgccacacagttcttgagg 9578627

                                                                         
Query: 268     atgcccttgatagcgcttaatgttcttatcattgttgtgaaaatggtgtcaggctgag 325
               ||||| |||||||||||||||||||||||||||||||||||  |||| || |||||||
Sbjct: 9578628 atgccgttgatagcgcttaatgttcttatcattgttgtgaagttggtatctggctgag 9578685



to top

>dbj|AP005811.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0706E03
          Length = 188028

 Score =  234 bits (118), Expect = 2e-58
 Identities = 208/238 (87%)
 Strand = Plus / Plus

                                                                         
Query: 88    atgggcttgtggatgctgctggagggttttttgcttcttgcaaattctttggctatcctg 147
             |||||| |||||| | |||||||||| ||||||||||| |||||| | || || || || 
Sbjct: 18545 atgggcctgtggacgttgctggagggctttttgcttctcgcaaatgcattagcgatacta 18604

                                                                         
Query: 148   aatgaagaccgctttcttggtcccaggggatggagcatgtctgaagtttcaggaaatggg 207
             |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| 
Sbjct: 18605 aatgaagaccgctttcttggccccagaggatggagcatgtctgaagtctcaggaaatgga 18664

                                                                         
Query: 208   caaacaaagtcgttgaaggggcagatcgtggggctcatctatgccactcagtttctgcgg 267
             ||||| |||||  ||||||| ||||| || ||||||||||||||||| |||||  || ||
Sbjct: 18665 caaaccaagtcactgaagggtcagattgtagggctcatctatgccacacagttcttgagg 18724

                                                                       
Query: 268   atgcccttgatagcgcttaatgttcttatcattgttgtgaaaatggtgtcaggctgag 325
             ||||| |||||||||||||||||||||||||||||||||||  |||| || |||||||
Sbjct: 18725 atgccgttgatagcgcttaatgttcttatcattgttgtgaagttggtatctggctgag 18782



to top

>ref|XM_450543.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 534

 Score =  232 bits (117), Expect = 8e-58
 Identities = 195/221 (88%)
 Strand = Plus / Plus

                                                                       
Query: 88  atgggcttgtggatgctgctggagggttttttgcttcttgcaaattctttggctatcctg 147
           |||||| |||||| | |||||||||| ||||||||||| |||||| | || || || || 
Sbjct: 220 atgggcctgtggacgttgctggagggctttttgcttctcgcaaatgcattagcgatacta 279

                                                                       
Query: 148 aatgaagaccgctttcttggtcccaggggatggagcatgtctgaagtttcaggaaatggg 207
           |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| 
Sbjct: 280 aatgaagaccgctttcttggccccagaggatggagcatgtctgaagtctcaggaaatgga 339

                                                                       
Query: 208 caaacaaagtcgttgaaggggcagatcgtggggctcatctatgccactcagtttctgcgg 267
           ||||| |||||  ||||||| ||||| || ||||||||||||||||| |||||  || ||
Sbjct: 340 caaaccaagtcactgaagggtcagattgtagggctcatctatgccacacagttcttgagg 399

                                                    
Query: 268 atgcccttgatagcgcttaatgttcttatcattgttgtgaa 308
           ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 400 atgccgttgatagcgcttaatgttcttatcattgttgtgaa 440



to top

>gb|AY107694.1| Zea mays PCO129709 mRNA sequence
          Length = 519

 Score =  210 bits (106), Expect = 3e-51
 Identities = 193/222 (86%)
 Strand = Plus / Plus

                                                                       
Query: 104 tgctggagggttttttgcttcttgcaaattctttggctatcctgaatgaagaccgctttc 163
           |||||||||||||||||||||| |||||| | ||||| ||  |||| || |||||||| |
Sbjct: 186 tgctggagggttttttgcttctcgcaaatgcgttggcgatattgaacgaggaccgcttcc 245

                                                                       
Query: 164 ttggtcccaggggatggagcatgtctgaagtttcaggaaatgggcaaacaaagtcgttga 223
           ||||||| ||||||||||||||||||||||| |||||||| |||||||| |||||||| |
Sbjct: 246 ttggtccaaggggatggagcatgtctgaagtatcaggaaacgggcaaaccaagtcgttca 305

                                                                       
Query: 224 aggggcagatcgtggggctcatctatgccactcagtttctgcggatgcccttgatagcgc 283
           |||| |||||||||||||| ||||| || || |||||||||||||||||||| || || |
Sbjct: 306 agggccagatcgtggggcttatctacgctacgcagtttctgcggatgcccttaattgctc 365

                                                     
Query: 284 ttaatgttcttatcattgttgtgaaaatggtgtcaggctgag 325
           | || ||||| ||||| ||||| ||| ||||||| |||||||
Sbjct: 366 tcaacgttctcatcatcgttgtcaaattggtgtctggctgag 407



to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  198 bits (100), Expect = 1e-47
 Identities = 187/216 (86%)
 Strand = Plus / Plus

                                                                            
Query: 109      gagggttttttgcttcttgcaaattctttggctatcctgaatgaagaccgctttcttggt 168
                |||||| ||||| ||||||||||| | ||||| || || |||||||||||||||||||  
Sbjct: 12205787 gagggtcttttgattcttgcaaatgcattggcgatactaaatgaagaccgctttcttgca 12205846

                                                                            
Query: 169      cccaggggatggagcatgtctgaagtttcaggaaatgggcaaacaaagtcgttgaagggg 228
                ||||| |||||||||||||||||||| ||||||||||| | | ||||||| |||||||| 
Sbjct: 12205847 cccagaggatggagcatgtctgaagtctcaggaaatggacgatcaaagtcattgaagggt 12205906

                                                                            
Query: 229      cagatcgtggggctcatctatgccactcagtttctgcggatgcccttgatagcgcttaat 288
                ||||| || || ||||| |||||||| |||||  |  ||||||| |||||||| ||||||
Sbjct: 12205907 cagattgtaggactcatatatgccacacagttctttaggatgccgttgatagcacttaat 12205966

                                                    
Query: 289      gttcttatcattgttgtgaaaatggtgtcaggctga 324
                ||||||||||||||||||||  ||||||||||||||
Sbjct: 12205967 gttcttatcattgttgtgaagttggtgtcaggctga 12206002



to top

>gb|AC132215.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0076E06, from chromosome 3, complete sequence
          Length = 126323

 Score =  198 bits (100), Expect = 1e-47
 Identities = 187/216 (86%)
 Strand = Plus / Plus

                                                                         
Query: 109   gagggttttttgcttcttgcaaattctttggctatcctgaatgaagaccgctttcttggt 168
             |||||| ||||| ||||||||||| | ||||| || || |||||||||||||||||||  
Sbjct: 98396 gagggtcttttgattcttgcaaatgcattggcgatactaaatgaagaccgctttcttgca 98455

                                                                         
Query: 169   cccaggggatggagcatgtctgaagtttcaggaaatgggcaaacaaagtcgttgaagggg 228
             ||||| |||||||||||||||||||| ||||||||||| | | ||||||| |||||||| 
Sbjct: 98456 cccagaggatggagcatgtctgaagtctcaggaaatggacgatcaaagtcattgaagggt 98515

                                                                         
Query: 229   cagatcgtggggctcatctatgccactcagtttctgcggatgcccttgatagcgcttaat 288
             ||||| || || ||||| |||||||| |||||  |  ||||||| |||||||| ||||||
Sbjct: 98516 cagattgtaggactcatatatgccacacagttctttaggatgccgttgatagcacttaat 98575

                                                 
Query: 289   gttcttatcattgttgtgaaaatggtgtcaggctga 324
             ||||||||||||||||||||  ||||||||||||||
Sbjct: 98576 gttcttatcattgttgtgaagttggtgtcaggctga 98611



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  198 bits (100), Expect = 1e-47
 Identities = 187/216 (86%)
 Strand = Plus / Plus

                                                                            
Query: 109      gagggttttttgcttcttgcaaattctttggctatcctgaatgaagaccgctttcttggt 168
                |||||| ||||| ||||||||||| | ||||| || || |||||||||||||||||||  
Sbjct: 12202550 gagggtcttttgattcttgcaaatgcattggcgatactaaatgaagaccgctttcttgca 12202609

                                                                            
Query: 169      cccaggggatggagcatgtctgaagtttcaggaaatgggcaaacaaagtcgttgaagggg 228
                ||||| |||||||||||||||||||| ||||||||||| | | ||||||| |||||||| 
Sbjct: 12202610 cccagaggatggagcatgtctgaagtctcaggaaatggacgatcaaagtcattgaagggt 12202669

                                                                            
Query: 229      cagatcgtggggctcatctatgccactcagtttctgcggatgcccttgatagcgcttaat 288
                ||||| || || ||||| |||||||| |||||  |  ||||||| |||||||| ||||||
Sbjct: 12202670 cagattgtaggactcatatatgccacacagttctttaggatgccgttgatagcacttaat 12202729

                                                    
Query: 289      gttcttatcattgttgtgaaaatggtgtcaggctga 324
                ||||||||||||||||||||  ||||||||||||||
Sbjct: 12202730 gttcttatcattgttgtgaagttggtgtcaggctga 12202765



to top

>dbj|AK099570.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034O05, full
           insert sequence
          Length = 512

 Score =  198 bits (100), Expect = 1e-47
 Identities = 187/216 (86%)
 Strand = Plus / Plus

                                                                       
Query: 109 gagggttttttgcttcttgcaaattctttggctatcctgaatgaagaccgctttcttggt 168
           |||||| ||||| ||||||||||| | ||||| || || |||||||||||||||||||  
Sbjct: 196 gagggtcttttgattcttgcaaatgcattggcgatactaaatgaagaccgctttcttgca 255

                                                                       
Query: 169 cccaggggatggagcatgtctgaagtttcaggaaatgggcaaacaaagtcgttgaagggg 228
           ||||| |||||||||||||||||||| ||||||||||| | | ||||||| |||||||| 
Sbjct: 256 cccagaggatggagcatgtctgaagtctcaggaaatggacgatcaaagtcattgaagggt 315

                                                                       
Query: 229 cagatcgtggggctcatctatgccactcagtttctgcggatgcccttgatagcgcttaat 288
           ||||| || || ||||| |||||||| |||||  |  ||||||| |||||||| ||||||
Sbjct: 316 cagattgtaggactcatatatgccacacagttctttaggatgccgttgatagcacttaat 375

                                               
Query: 289 gttcttatcattgttgtgaaaatggtgtcaggctga 324
           ||||||||||||||||||||  ||||||||||||||
Sbjct: 376 gttcttatcattgttgtgaagttggtgtcaggctga 411



to top

>dbj|AK063044.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-D09, full
           insert sequence
          Length = 508

 Score =  198 bits (100), Expect = 1e-47
 Identities = 187/216 (86%)
 Strand = Plus / Plus

                                                                       
Query: 109 gagggttttttgcttcttgcaaattctttggctatcctgaatgaagaccgctttcttggt 168
           |||||| ||||| ||||||||||| | ||||| || || |||||||||||||||||||  
Sbjct: 194 gagggtcttttgattcttgcaaatgcattggcgatactaaatgaagaccgctttcttgca 253

                                                                       
Query: 169 cccaggggatggagcatgtctgaagtttcaggaaatgggcaaacaaagtcgttgaagggg 228
           ||||| |||||||||||||||||||| ||||||||||| | | ||||||| |||||||| 
Sbjct: 254 cccagaggatggagcatgtctgaagtctcaggaaatggacgatcaaagtcattgaagggt 313

                                                                       
Query: 229 cagatcgtggggctcatctatgccactcagtttctgcggatgcccttgatagcgcttaat 288
           ||||| || || ||||| |||||||| |||||  |  ||||||| |||||||| ||||||
Sbjct: 314 cagattgtaggactcatatatgccacacagttctttaggatgccgttgatagcacttaat 373

                                               
Query: 289 gttcttatcattgttgtgaaaatggtgtcaggctga 324
           ||||||||||||||||||||  ||||||||||||||
Sbjct: 374 gttcttatcattgttgtgaagttggtgtcaggctga 409



to top

>emb|AL589699.4| Mouse DNA sequence from clone RP23-92G13 on chromosome 13 Contains the 3'
              end of the gene for a novel protein similar to KIAA0386,
              five novel genes, the Gmnn gene for geminin, gene PNAS-27,
              the Ttrap gene for Traf and Tnf receptor associated
              protein, the gene for a novel protein similar to KIAA0319,
              the gene for the ortholog of human and rat aldehyde
              dehydrogenase 5A1 (succinate-semialdehyde dehydrogenase)
              (ALDH5A1) (SSADH), the 5' end of the Gpld1 gene for
              glycosylphosphatidylinositol specific phospholipase D1 and
              four CpG islands, complete sequence
          Length = 256608

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 194    tttcaggaaatgggcaaacaaa 215
              ||||||||||||||||||||||
Sbjct: 167552 tttcaggaaatgggcaaacaaa 167531



to top

>gb|AC145913.3| Gallus gallus BAC clone CH261-50N9 from chromosome unknown, complete
              sequence
          Length = 182816

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 197    caggaaatgggcaaacaaagt 217
              |||||||||||||||||||||
Sbjct: 168583 caggaaatgggcaaacaaagt 168563



to top

>emb|CR956648.9| Pig DNA sequence from clone CH242-155F23 on chromosome 17, complete
              sequence
          Length = 168798

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 283    cttaatgttcttatcattgttgtga 307
              |||| ||||||||||||||||||||
Sbjct: 151319 cttattgttcttatcattgttgtga 151343



to top

>gb|AC124228.16| Mus musculus chromosome 5, clone RP23-345O14, complete sequence
          Length = 219244

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 358    ctgatttcagtttccagcat 377
              ||||||||||||||||||||
Sbjct: 181070 ctgatttcagtttccagcat 181089



to top

>gb|AC113285.9| Mus musculus chromosome 5, clone RP23-407I6, complete sequence
          Length = 283052

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 355    gatctgatttcagtttccagcatt 378
              ||||||| ||||||||||||||||
Sbjct: 142641 gatctgagttcagtttccagcatt 142618



to top

>gb|AC132102.3| Mus musculus BAC clone RP24-360K9 from chromosome 5, complete sequence
          Length = 144545

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 358   ctgatttcagtttccagcat 377
             ||||||||||||||||||||
Sbjct: 31155 ctgatttcagtttccagcat 31174



to top

>gb|AC119803.10| Mus musculus chromosome 6, clone RP23-124H21, complete sequence
          Length = 197762

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 284    ttaatgttcttatcattgtt 303
              ||||||||||||||||||||
Sbjct: 189350 ttaatgttcttatcattgtt 189369



to top

>gb|AY833270.1| Lontra canadensis microsatellite RIO19 sequence
          Length = 542

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 112 ggttttttgcttcttgcaaa 131
           ||||||||||||||||||||
Sbjct: 194 ggttttttgcttcttgcaaa 175



to top

>emb|CR855258.6| Zebrafish DNA sequence from clone DKEY-2N12 in linkage group 5,
             complete sequence
          Length = 141618

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 351   ggttgatctgatttcagttt 370
             ||||||||||||||||||||
Sbjct: 67121 ggttgatctgatttcagttt 67140



to top

>emb|AL662812.12| Mouse DNA sequence from clone RP23-48A2 on chromosome 11 Contains the
             gene for a novel protein similar to smoothelin Smtn, three
             novel genes, the Mybbp1a gene for MYB binding protein
             (P160) 1a, a ribosomal protein 7a (Rpl7a) pseudogene, the
             5' end of the Ube2g1 gene for ubiquitin-conjugating enzyme
             E2G 1 (UBC7 homolog, C. elegans) and four CpG islands,
             complete sequence
          Length = 258521

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   tggagcatgtctgaagtttc 197
             ||||||||||||||||||||
Sbjct: 12586 tggagcatgtctgaagtttc 12567



to top

>emb|AL592065.7| Mouse DNA sequence from clone RP23-50E4 on chromosome 11 Contains the 3'
              end of a novel gene, two novel genes, the 5' end of the
              Brip1 gene for BRCA1 interacting protein C-terminal
              helicase 1 and a mitochondrial F0 complex H+ transporting
              ATP synthase subunit g (Atp5l) pseudogene, complete
              sequence
          Length = 200624

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 355    gatctgatttcagtttccag 374
              ||||||||||||||||||||
Sbjct: 138759 gatctgatttcagtttccag 138740



to top

>gb|AC162465.3| Mus musculus 6 BAC RP24-108G5 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 203546

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 284    ttaatgttcttatcattgtt 303
              ||||||||||||||||||||
Sbjct: 168930 ttaatgttcttatcattgtt 168911



to top

>gb|AC105361.2| Homo sapiens chromosome , clone RP11-170D6, complete sequence
          Length = 160074

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 288   tgttcttatcattgttgtgaaaat 311
             ||||||||||||| ||||||||||
Sbjct: 54205 tgttcttatcattcttgtgaaaat 54228



to top

>gb|AC097521.2| Homo sapiens BAC clone RP11-565A3 from 4, complete sequence
          Length = 184729

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    ggcaaacaaagtcgttgaag 225
              ||||||||||||||||||||
Sbjct: 129363 ggcaaacaaagtcgttgaag 129344



to top

>gb|AC087714.6| Homo sapiens chromosome 17, clone RP11-167A1, complete sequence
          Length = 163377

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 288   tgttcttatcattgttgtgaaaat 311
             ||||||||||||| ||||||||||
Sbjct: 42498 tgttcttatcattcttgtgaaaat 42475



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 124      cttgcaaattctttggctat 143
                ||||||||||||||||||||
Sbjct: 24419573 cttgcaaattctttggctat 24419554



to top

>emb|BX324171.9| Zebrafish DNA sequence from clone DKEYP-57C9 in linkage group 5,
             complete sequence
          Length = 151068

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 351   ggttgatctgatttcagttt 370
             ||||||||||||||||||||
Sbjct: 33760 ggttgatctgatttcagttt 33779



to top

>dbj|AP002768.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-673F18, complete
             sequence
          Length = 186084

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    cttgtggatgctgctggagg 112
             ||||||||||||||||||||
Sbjct: 76588 cttgtggatgctgctggagg 76569



to top

>gb|AC153853.4| Mus musculus  BAC RP23-341J13 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 194037

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 284   ttaatgttcttatcattgtt 303
             ||||||||||||||||||||
Sbjct: 26640 ttaatgttcttatcattgtt 26621



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 124      cttgcaaattctttggctat 143
                ||||||||||||||||||||
Sbjct: 24347779 cttgcaaattctttggctat 24347760



to top

>emb|AL772423.4|CNS08CA1 Oryza sativa chromosome 12, . BAC OJ1058_H10 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 103803

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   cttgcaaattctttggctat 143
             ||||||||||||||||||||
Sbjct: 83105 cttgcaaattctttggctat 83086



to top

>gb|AC150895.2| Mus musculus BAC clone RP24-274J5 from 7, complete sequence
          Length = 179893

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   gggatggagcatgtctgaag 193
             ||||||||||||||||||||
Sbjct: 53223 gggatggagcatgtctgaag 53204



to top

>emb|AL772344.4| Mouse DNA sequence from clone RP23-235J15 on chromosome 4, complete
              sequence
          Length = 223771

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 354    tgatctgatttcagtttccagcat 377
              |||||||| |||||||||||||||
Sbjct: 138546 tgatctgaattcagtttccagcat 138569



to top

>dbj|AP001939.3| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2231G18, complete
              sequence
          Length = 147114

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    ttttttgcttcttgcaaatt 133
              ||||||||||||||||||||
Sbjct: 134543 ttttttgcttcttgcaaatt 134524



to top

>dbj|AP001816.2| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:563D14, complete
             sequence
          Length = 123323

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   ttttttgcttcttgcaaatt 133
             ||||||||||||||||||||
Sbjct: 32493 ttttttgcttcttgcaaatt 32474


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,151,790
Number of Sequences: 3902068
Number of extensions: 4151790
Number of successful extensions: 74657
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74512
Number of HSP's gapped (non-prelim): 145
length of query: 445
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 423
effective length of database: 17,147,199,772
effective search space: 7253265503556
effective search space used: 7253265503556
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top