| Clone Name | basd0h03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 234 bits (118), Expect = 2e-58 Identities = 208/238 (87%) Strand = Plus / Plus Query: 88 atgggcttgtggatgctgctggagggttttttgcttcttgcaaattctttggctatcctg 147 |||||| |||||| | |||||||||| ||||||||||| |||||| | || || || || Sbjct: 9578448 atgggcctgtggacgttgctggagggctttttgcttctcgcaaatgcattagcgatacta 9578507 Query: 148 aatgaagaccgctttcttggtcccaggggatggagcatgtctgaagtttcaggaaatggg 207 |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| Sbjct: 9578508 aatgaagaccgctttcttggccccagaggatggagcatgtctgaagtctcaggaaatgga 9578567 Query: 208 caaacaaagtcgttgaaggggcagatcgtggggctcatctatgccactcagtttctgcgg 267 ||||| ||||| ||||||| ||||| || ||||||||||||||||| ||||| || || Sbjct: 9578568 caaaccaagtcactgaagggtcagattgtagggctcatctatgccacacagttcttgagg 9578627 Query: 268 atgcccttgatagcgcttaatgttcttatcattgttgtgaaaatggtgtcaggctgag 325 ||||| ||||||||||||||||||||||||||||||||||| |||| || ||||||| Sbjct: 9578628 atgccgttgatagcgcttaatgttcttatcattgttgtgaagttggtatctggctgag 9578685
>dbj|AP005811.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0706E03 Length = 188028 Score = 234 bits (118), Expect = 2e-58 Identities = 208/238 (87%) Strand = Plus / Plus Query: 88 atgggcttgtggatgctgctggagggttttttgcttcttgcaaattctttggctatcctg 147 |||||| |||||| | |||||||||| ||||||||||| |||||| | || || || || Sbjct: 18545 atgggcctgtggacgttgctggagggctttttgcttctcgcaaatgcattagcgatacta 18604 Query: 148 aatgaagaccgctttcttggtcccaggggatggagcatgtctgaagtttcaggaaatggg 207 |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| Sbjct: 18605 aatgaagaccgctttcttggccccagaggatggagcatgtctgaagtctcaggaaatgga 18664 Query: 208 caaacaaagtcgttgaaggggcagatcgtggggctcatctatgccactcagtttctgcgg 267 ||||| ||||| ||||||| ||||| || ||||||||||||||||| ||||| || || Sbjct: 18665 caaaccaagtcactgaagggtcagattgtagggctcatctatgccacacagttcttgagg 18724 Query: 268 atgcccttgatagcgcttaatgttcttatcattgttgtgaaaatggtgtcaggctgag 325 ||||| ||||||||||||||||||||||||||||||||||| |||| || ||||||| Sbjct: 18725 atgccgttgatagcgcttaatgttcttatcattgttgtgaagttggtatctggctgag 18782
>ref|XM_450543.1| Oryza sativa (japonica cultivar-group), mRNA Length = 534 Score = 232 bits (117), Expect = 8e-58 Identities = 195/221 (88%) Strand = Plus / Plus Query: 88 atgggcttgtggatgctgctggagggttttttgcttcttgcaaattctttggctatcctg 147 |||||| |||||| | |||||||||| ||||||||||| |||||| | || || || || Sbjct: 220 atgggcctgtggacgttgctggagggctttttgcttctcgcaaatgcattagcgatacta 279 Query: 148 aatgaagaccgctttcttggtcccaggggatggagcatgtctgaagtttcaggaaatggg 207 |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| Sbjct: 280 aatgaagaccgctttcttggccccagaggatggagcatgtctgaagtctcaggaaatgga 339 Query: 208 caaacaaagtcgttgaaggggcagatcgtggggctcatctatgccactcagtttctgcgg 267 ||||| ||||| ||||||| ||||| || ||||||||||||||||| ||||| || || Sbjct: 340 caaaccaagtcactgaagggtcagattgtagggctcatctatgccacacagttcttgagg 399 Query: 268 atgcccttgatagcgcttaatgttcttatcattgttgtgaa 308 ||||| ||||||||||||||||||||||||||||||||||| Sbjct: 400 atgccgttgatagcgcttaatgttcttatcattgttgtgaa 440
>gb|AY107694.1| Zea mays PCO129709 mRNA sequence Length = 519 Score = 210 bits (106), Expect = 3e-51 Identities = 193/222 (86%) Strand = Plus / Plus Query: 104 tgctggagggttttttgcttcttgcaaattctttggctatcctgaatgaagaccgctttc 163 |||||||||||||||||||||| |||||| | ||||| || |||| || |||||||| | Sbjct: 186 tgctggagggttttttgcttctcgcaaatgcgttggcgatattgaacgaggaccgcttcc 245 Query: 164 ttggtcccaggggatggagcatgtctgaagtttcaggaaatgggcaaacaaagtcgttga 223 ||||||| ||||||||||||||||||||||| |||||||| |||||||| |||||||| | Sbjct: 246 ttggtccaaggggatggagcatgtctgaagtatcaggaaacgggcaaaccaagtcgttca 305 Query: 224 aggggcagatcgtggggctcatctatgccactcagtttctgcggatgcccttgatagcgc 283 |||| |||||||||||||| ||||| || || |||||||||||||||||||| || || | Sbjct: 306 agggccagatcgtggggcttatctacgctacgcagtttctgcggatgcccttaattgctc 365 Query: 284 ttaatgttcttatcattgttgtgaaaatggtgtcaggctgag 325 | || ||||| ||||| ||||| ||| ||||||| ||||||| Sbjct: 366 tcaacgttctcatcatcgttgtcaaattggtgtctggctgag 407
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 198 bits (100), Expect = 1e-47 Identities = 187/216 (86%) Strand = Plus / Plus Query: 109 gagggttttttgcttcttgcaaattctttggctatcctgaatgaagaccgctttcttggt 168 |||||| ||||| ||||||||||| | ||||| || || ||||||||||||||||||| Sbjct: 12205787 gagggtcttttgattcttgcaaatgcattggcgatactaaatgaagaccgctttcttgca 12205846 Query: 169 cccaggggatggagcatgtctgaagtttcaggaaatgggcaaacaaagtcgttgaagggg 228 ||||| |||||||||||||||||||| ||||||||||| | | ||||||| |||||||| Sbjct: 12205847 cccagaggatggagcatgtctgaagtctcaggaaatggacgatcaaagtcattgaagggt 12205906 Query: 229 cagatcgtggggctcatctatgccactcagtttctgcggatgcccttgatagcgcttaat 288 ||||| || || ||||| |||||||| ||||| | ||||||| |||||||| |||||| Sbjct: 12205907 cagattgtaggactcatatatgccacacagttctttaggatgccgttgatagcacttaat 12205966 Query: 289 gttcttatcattgttgtgaaaatggtgtcaggctga 324 |||||||||||||||||||| |||||||||||||| Sbjct: 12205967 gttcttatcattgttgtgaagttggtgtcaggctga 12206002
>gb|AC132215.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0076E06, from chromosome 3, complete sequence Length = 126323 Score = 198 bits (100), Expect = 1e-47 Identities = 187/216 (86%) Strand = Plus / Plus Query: 109 gagggttttttgcttcttgcaaattctttggctatcctgaatgaagaccgctttcttggt 168 |||||| ||||| ||||||||||| | ||||| || || ||||||||||||||||||| Sbjct: 98396 gagggtcttttgattcttgcaaatgcattggcgatactaaatgaagaccgctttcttgca 98455 Query: 169 cccaggggatggagcatgtctgaagtttcaggaaatgggcaaacaaagtcgttgaagggg 228 ||||| |||||||||||||||||||| ||||||||||| | | ||||||| |||||||| Sbjct: 98456 cccagaggatggagcatgtctgaagtctcaggaaatggacgatcaaagtcattgaagggt 98515 Query: 229 cagatcgtggggctcatctatgccactcagtttctgcggatgcccttgatagcgcttaat 288 ||||| || || ||||| |||||||| ||||| | ||||||| |||||||| |||||| Sbjct: 98516 cagattgtaggactcatatatgccacacagttctttaggatgccgttgatagcacttaat 98575 Query: 289 gttcttatcattgttgtgaaaatggtgtcaggctga 324 |||||||||||||||||||| |||||||||||||| Sbjct: 98576 gttcttatcattgttgtgaagttggtgtcaggctga 98611
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 198 bits (100), Expect = 1e-47 Identities = 187/216 (86%) Strand = Plus / Plus Query: 109 gagggttttttgcttcttgcaaattctttggctatcctgaatgaagaccgctttcttggt 168 |||||| ||||| ||||||||||| | ||||| || || ||||||||||||||||||| Sbjct: 12202550 gagggtcttttgattcttgcaaatgcattggcgatactaaatgaagaccgctttcttgca 12202609 Query: 169 cccaggggatggagcatgtctgaagtttcaggaaatgggcaaacaaagtcgttgaagggg 228 ||||| |||||||||||||||||||| ||||||||||| | | ||||||| |||||||| Sbjct: 12202610 cccagaggatggagcatgtctgaagtctcaggaaatggacgatcaaagtcattgaagggt 12202669 Query: 229 cagatcgtggggctcatctatgccactcagtttctgcggatgcccttgatagcgcttaat 288 ||||| || || ||||| |||||||| ||||| | ||||||| |||||||| |||||| Sbjct: 12202670 cagattgtaggactcatatatgccacacagttctttaggatgccgttgatagcacttaat 12202729 Query: 289 gttcttatcattgttgtgaaaatggtgtcaggctga 324 |||||||||||||||||||| |||||||||||||| Sbjct: 12202730 gttcttatcattgttgtgaagttggtgtcaggctga 12202765
>dbj|AK099570.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034O05, full insert sequence Length = 512 Score = 198 bits (100), Expect = 1e-47 Identities = 187/216 (86%) Strand = Plus / Plus Query: 109 gagggttttttgcttcttgcaaattctttggctatcctgaatgaagaccgctttcttggt 168 |||||| ||||| ||||||||||| | ||||| || || ||||||||||||||||||| Sbjct: 196 gagggtcttttgattcttgcaaatgcattggcgatactaaatgaagaccgctttcttgca 255 Query: 169 cccaggggatggagcatgtctgaagtttcaggaaatgggcaaacaaagtcgttgaagggg 228 ||||| |||||||||||||||||||| ||||||||||| | | ||||||| |||||||| Sbjct: 256 cccagaggatggagcatgtctgaagtctcaggaaatggacgatcaaagtcattgaagggt 315 Query: 229 cagatcgtggggctcatctatgccactcagtttctgcggatgcccttgatagcgcttaat 288 ||||| || || ||||| |||||||| ||||| | ||||||| |||||||| |||||| Sbjct: 316 cagattgtaggactcatatatgccacacagttctttaggatgccgttgatagcacttaat 375 Query: 289 gttcttatcattgttgtgaaaatggtgtcaggctga 324 |||||||||||||||||||| |||||||||||||| Sbjct: 376 gttcttatcattgttgtgaagttggtgtcaggctga 411
>dbj|AK063044.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-D09, full insert sequence Length = 508 Score = 198 bits (100), Expect = 1e-47 Identities = 187/216 (86%) Strand = Plus / Plus Query: 109 gagggttttttgcttcttgcaaattctttggctatcctgaatgaagaccgctttcttggt 168 |||||| ||||| ||||||||||| | ||||| || || ||||||||||||||||||| Sbjct: 194 gagggtcttttgattcttgcaaatgcattggcgatactaaatgaagaccgctttcttgca 253 Query: 169 cccaggggatggagcatgtctgaagtttcaggaaatgggcaaacaaagtcgttgaagggg 228 ||||| |||||||||||||||||||| ||||||||||| | | ||||||| |||||||| Sbjct: 254 cccagaggatggagcatgtctgaagtctcaggaaatggacgatcaaagtcattgaagggt 313 Query: 229 cagatcgtggggctcatctatgccactcagtttctgcggatgcccttgatagcgcttaat 288 ||||| || || ||||| |||||||| ||||| | ||||||| |||||||| |||||| Sbjct: 314 cagattgtaggactcatatatgccacacagttctttaggatgccgttgatagcacttaat 373 Query: 289 gttcttatcattgttgtgaaaatggtgtcaggctga 324 |||||||||||||||||||| |||||||||||||| Sbjct: 374 gttcttatcattgttgtgaagttggtgtcaggctga 409
>emb|AL589699.4| Mouse DNA sequence from clone RP23-92G13 on chromosome 13 Contains the 3' end of the gene for a novel protein similar to KIAA0386, five novel genes, the Gmnn gene for geminin, gene PNAS-27, the Ttrap gene for Traf and Tnf receptor associated protein, the gene for a novel protein similar to KIAA0319, the gene for the ortholog of human and rat aldehyde dehydrogenase 5A1 (succinate-semialdehyde dehydrogenase) (ALDH5A1) (SSADH), the 5' end of the Gpld1 gene for glycosylphosphatidylinositol specific phospholipase D1 and four CpG islands, complete sequence Length = 256608 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 194 tttcaggaaatgggcaaacaaa 215 |||||||||||||||||||||| Sbjct: 167552 tttcaggaaatgggcaaacaaa 167531
>gb|AC145913.3| Gallus gallus BAC clone CH261-50N9 from chromosome unknown, complete sequence Length = 182816 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 197 caggaaatgggcaaacaaagt 217 ||||||||||||||||||||| Sbjct: 168583 caggaaatgggcaaacaaagt 168563
>emb|CR956648.9| Pig DNA sequence from clone CH242-155F23 on chromosome 17, complete sequence Length = 168798 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 283 cttaatgttcttatcattgttgtga 307 |||| |||||||||||||||||||| Sbjct: 151319 cttattgttcttatcattgttgtga 151343
>gb|AC124228.16| Mus musculus chromosome 5, clone RP23-345O14, complete sequence Length = 219244 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 ctgatttcagtttccagcat 377 |||||||||||||||||||| Sbjct: 181070 ctgatttcagtttccagcat 181089
>gb|AC113285.9| Mus musculus chromosome 5, clone RP23-407I6, complete sequence Length = 283052 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 355 gatctgatttcagtttccagcatt 378 ||||||| |||||||||||||||| Sbjct: 142641 gatctgagttcagtttccagcatt 142618
>gb|AC132102.3| Mus musculus BAC clone RP24-360K9 from chromosome 5, complete sequence Length = 144545 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 ctgatttcagtttccagcat 377 |||||||||||||||||||| Sbjct: 31155 ctgatttcagtttccagcat 31174
>gb|AC119803.10| Mus musculus chromosome 6, clone RP23-124H21, complete sequence Length = 197762 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 ttaatgttcttatcattgtt 303 |||||||||||||||||||| Sbjct: 189350 ttaatgttcttatcattgtt 189369
>gb|AY833270.1| Lontra canadensis microsatellite RIO19 sequence Length = 542 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 ggttttttgcttcttgcaaa 131 |||||||||||||||||||| Sbjct: 194 ggttttttgcttcttgcaaa 175
>emb|CR855258.6| Zebrafish DNA sequence from clone DKEY-2N12 in linkage group 5, complete sequence Length = 141618 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 ggttgatctgatttcagttt 370 |||||||||||||||||||| Sbjct: 67121 ggttgatctgatttcagttt 67140
>emb|AL662812.12| Mouse DNA sequence from clone RP23-48A2 on chromosome 11 Contains the gene for a novel protein similar to smoothelin Smtn, three novel genes, the Mybbp1a gene for MYB binding protein (P160) 1a, a ribosomal protein 7a (Rpl7a) pseudogene, the 5' end of the Ube2g1 gene for ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans) and four CpG islands, complete sequence Length = 258521 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 tggagcatgtctgaagtttc 197 |||||||||||||||||||| Sbjct: 12586 tggagcatgtctgaagtttc 12567
>emb|AL592065.7| Mouse DNA sequence from clone RP23-50E4 on chromosome 11 Contains the 3' end of a novel gene, two novel genes, the 5' end of the Brip1 gene for BRCA1 interacting protein C-terminal helicase 1 and a mitochondrial F0 complex H+ transporting ATP synthase subunit g (Atp5l) pseudogene, complete sequence Length = 200624 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 gatctgatttcagtttccag 374 |||||||||||||||||||| Sbjct: 138759 gatctgatttcagtttccag 138740
>gb|AC162465.3| Mus musculus 6 BAC RP24-108G5 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 203546 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 ttaatgttcttatcattgtt 303 |||||||||||||||||||| Sbjct: 168930 ttaatgttcttatcattgtt 168911
>gb|AC105361.2| Homo sapiens chromosome , clone RP11-170D6, complete sequence Length = 160074 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 288 tgttcttatcattgttgtgaaaat 311 ||||||||||||| |||||||||| Sbjct: 54205 tgttcttatcattcttgtgaaaat 54228
>gb|AC097521.2| Homo sapiens BAC clone RP11-565A3 from 4, complete sequence Length = 184729 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 ggcaaacaaagtcgttgaag 225 |||||||||||||||||||| Sbjct: 129363 ggcaaacaaagtcgttgaag 129344
>gb|AC087714.6| Homo sapiens chromosome 17, clone RP11-167A1, complete sequence Length = 163377 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 tgttcttatcattgttgtgaaaat 311 ||||||||||||| |||||||||| Sbjct: 42498 tgttcttatcattcttgtgaaaat 42475
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 cttgcaaattctttggctat 143 |||||||||||||||||||| Sbjct: 24419573 cttgcaaattctttggctat 24419554
>emb|BX324171.9| Zebrafish DNA sequence from clone DKEYP-57C9 in linkage group 5, complete sequence Length = 151068 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 ggttgatctgatttcagttt 370 |||||||||||||||||||| Sbjct: 33760 ggttgatctgatttcagttt 33779
>dbj|AP002768.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-673F18, complete sequence Length = 186084 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 cttgtggatgctgctggagg 112 |||||||||||||||||||| Sbjct: 76588 cttgtggatgctgctggagg 76569
>gb|AC153853.4| Mus musculus BAC RP23-341J13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 194037 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 ttaatgttcttatcattgtt 303 |||||||||||||||||||| Sbjct: 26640 ttaatgttcttatcattgtt 26621
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 cttgcaaattctttggctat 143 |||||||||||||||||||| Sbjct: 24347779 cttgcaaattctttggctat 24347760
>emb|AL772423.4|CNS08CA1 Oryza sativa chromosome 12, . BAC OJ1058_H10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 103803 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 cttgcaaattctttggctat 143 |||||||||||||||||||| Sbjct: 83105 cttgcaaattctttggctat 83086
>gb|AC150895.2| Mus musculus BAC clone RP24-274J5 from 7, complete sequence Length = 179893 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 gggatggagcatgtctgaag 193 |||||||||||||||||||| Sbjct: 53223 gggatggagcatgtctgaag 53204
>emb|AL772344.4| Mouse DNA sequence from clone RP23-235J15 on chromosome 4, complete sequence Length = 223771 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 354 tgatctgatttcagtttccagcat 377 |||||||| ||||||||||||||| Sbjct: 138546 tgatctgaattcagtttccagcat 138569
>dbj|AP001939.3| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2231G18, complete sequence Length = 147114 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 ttttttgcttcttgcaaatt 133 |||||||||||||||||||| Sbjct: 134543 ttttttgcttcttgcaaatt 134524
>dbj|AP001816.2| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:563D14, complete sequence Length = 123323 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 ttttttgcttcttgcaaatt 133 |||||||||||||||||||| Sbjct: 32493 ttttttgcttcttgcaaatt 32474 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,151,790 Number of Sequences: 3902068 Number of extensions: 4151790 Number of successful extensions: 74657 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74512 Number of HSP's gapped (non-prelim): 145 length of query: 445 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 423 effective length of database: 17,147,199,772 effective search space: 7253265503556 effective search space used: 7253265503556 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)