ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd0h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TIP1_ARATH (Q52T38) Palmitoyltransferase TIP1 (EC 2.3.1.-) (Anky... 48 6e-06
2PTM3C_BUCAI (P57635) PTS system mannitol-specific EIICBA compone... 30 2.4

>TIP1_ARATH (Q52T38) Palmitoyltransferase TIP1 (EC 2.3.1.-) (Ankyrin|
           repeat-containing S-palmitoyltransferase) (Protein TIP
           GROWTH DEFECTIVE1)
          Length = 620

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 21/32 (65%), Positives = 28/32 (87%)
 Frame = +2

Query: 5   RSGLTPAQLAADKSHRQVAFYLGNARKVHSTR 100
           ++GLTPAQLAA+K+HRQV+F+LGNAR +   R
Sbjct: 231 KTGLTPAQLAAEKNHRQVSFFLGNARSLLEKR 262



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>PTM3C_BUCAI (P57635) PTS system mannitol-specific EIICBA component (EIICBA-Mtl)|
           (EII-Mtl) [Includes: Mannitol permease IIC component
           (PTS system mannitol-specific EIIC component);
           Mannitol-specific phosphotransferase enzyme IIB
           component (EC 2.7.1.69) (P
          Length = 632

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 121 LSKLGLAPRAMHFSSIPKVKCNLPVTLISSKL 26
           LS L + P+ ++FS+I  V C+  V+ ISS +
Sbjct: 301 LSILAMTPKGLYFSNIISVACSFLVSFISSSI 332


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,829,778
Number of Sequences: 219361
Number of extensions: 337975
Number of successful extensions: 804
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 80,573,946
effective HSP length: 27
effective length of database: 74,651,199
effective search space used: 1791628776
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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