ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd0h01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 216 5e-53
2dbj|AP005409.4| Oryza sativa (japonica cultivar-group) genomic D... 216 5e-53
3dbj|AK105193.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 5e-53
4gb|BT017394.1| Zea mays clone EL01N0327H09.c mRNA sequence 202 8e-49
5gb|AY105159.1| Zea mays PCO075778 mRNA sequence 202 8e-49
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
7dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
8dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
9gb|AC112676.8| Mus musculus chromosome 9, clone RP23-174F7, comp... 46 0.11
10dbj|AP002833.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 1.8
11gb|BC068332.1| Danio rerio zgc:85626, mRNA (cDNA clone MGC:85626... 40 7.1
12ref|XM_656096.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 7.1
13gb|AC184077.2| Populus trichocarpa clone Pop1-53L15, complete se... 40 7.1
14emb|AL772148.6| Zebrafish DNA sequence from clone CH211-153C20 i... 40 7.1
15emb|BX897741.9| Zebrafish DNA sequence from clone DKEY-273O13 in... 40 7.1
16gb|AF291662.1| Aspergillus nidulans Kex2-like dibasic endoprotea... 40 7.1
17ref|XM_681635.1| PREDICTED: Danio rerio similar to 2,4-dienoyl C... 40 7.1
18ref|XM_703423.1| PREDICTED: Danio rerio similar to 2,4-dienoyl C... 40 7.1
19ref|XM_681286.1| PREDICTED: Danio rerio similar to 2,4-dienoyl C... 40 7.1
20ref|XM_703300.1| PREDICTED: Danio rerio similar to 2,4-dienoyl C... 40 7.1
21ref|NM_213321.1| Danio rerio zgc:85626 (zgc:85626), mRNA 40 7.1
22gb|AC009490.10| Homo sapiens BAC clone RP11-355A23 from 2, compl... 40 7.1
23emb|BX322785.6| Zebrafish DNA sequence from clone DKEYP-78B1 in ... 40 7.1
24gb|AC151747.3| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 7.1
25emb|AL954147.12| Zebrafish DNA sequence from clone CH211-117H23 ... 40 7.1
26gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome 40 7.1 
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  216 bits (109), Expect = 5e-53
 Identities = 220/257 (85%)
 Strand = Plus / Plus

                                                                           
Query: 3       agggtgtccagccagctcaagacagaggagggcgcagaggtagtcgcggaacaggcctgc 62
               ||||| ||| ||||||| ||||  ||||| ||||| ||||| || ||||| ||||| |||
Sbjct: 2978390 agggtttccggccagctgaagagggaggaaggcgcggaggtggtggcggagcaggcttgc 2978449

                                                                           
Query: 63      tacctcccgtgcaccgatgacgggctgccggtcattggggaaatgcccggggtgaaggga 122
               ||||| |||||||||||||||||  ||||||| || ||||| ||||| || |||||||| 
Sbjct: 2978450 tacctgccgtgcaccgatgacggtttgccggtgatcggggagatgcctggagtgaagggt 2978509

                                                                           
Query: 123     tgctacgttgcaaccgggcacagctgctgggggatcctcaatgctccagttaccggtgca 182
               ||||| || || |||||||||||||||||||||||||||||||||||||  |||||||| 
Sbjct: 2978510 tgctatgtcgccaccgggcacagctgctgggggatcctcaatgctccagccaccggtgcc 2978569

                                                                           
Query: 183     gcactcgccgagctcatcctcgatgggcaggccaagatcgttgatcttgcgcccttcagc 242
               || ||||| |||||||||||||| ||  | ||||||||||| ||||| ||||| ||||||
Sbjct: 2978570 gctctcgcagagctcatcctcgacggcgatgccaagatcgtcgatctcgcgccgttcagc 2978629

                                
Query: 243     ccggcaagatttctcaa 259
               || ||||| ||||||||
Sbjct: 2978630 ccagcaaggtttctcaa 2978646
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>dbj|AP005409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0024L18
          Length = 150128

 Score =  216 bits (109), Expect = 5e-53
 Identities = 220/257 (85%)
 Strand = Plus / Plus

                                                                         
Query: 3     agggtgtccagccagctcaagacagaggagggcgcagaggtagtcgcggaacaggcctgc 62
             ||||| ||| ||||||| ||||  ||||| ||||| ||||| || ||||| ||||| |||
Sbjct: 24445 agggtttccggccagctgaagagggaggaaggcgcggaggtggtggcggagcaggcttgc 24504

                                                                         
Query: 63    tacctcccgtgcaccgatgacgggctgccggtcattggggaaatgcccggggtgaaggga 122
             ||||| |||||||||||||||||  ||||||| || ||||| ||||| || |||||||| 
Sbjct: 24505 tacctgccgtgcaccgatgacggtttgccggtgatcggggagatgcctggagtgaagggt 24564

                                                                         
Query: 123   tgctacgttgcaaccgggcacagctgctgggggatcctcaatgctccagttaccggtgca 182
             ||||| || || |||||||||||||||||||||||||||||||||||||  |||||||| 
Sbjct: 24565 tgctatgtcgccaccgggcacagctgctgggggatcctcaatgctccagccaccggtgcc 24624

                                                                         
Query: 183   gcactcgccgagctcatcctcgatgggcaggccaagatcgttgatcttgcgcccttcagc 242
             || ||||| |||||||||||||| ||  | ||||||||||| ||||| ||||| ||||||
Sbjct: 24625 gctctcgcagagctcatcctcgacggcgatgccaagatcgtcgatctcgcgccgttcagc 24684

                              
Query: 243   ccggcaagatttctcaa 259
             || ||||| ||||||||
Sbjct: 24685 ccagcaaggtttctcaa 24701
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>dbj|AK105193.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-D11, full
            insert sequence
          Length = 1364

 Score =  216 bits (109), Expect = 5e-53
 Identities = 220/257 (85%)
 Strand = Plus / Plus

                                                                        
Query: 3    agggtgtccagccagctcaagacagaggagggcgcagaggtagtcgcggaacaggcctgc 62
            ||||| ||| ||||||| ||||  ||||| ||||| ||||| || ||||| ||||| |||
Sbjct: 919  agggtttccggccagctgaagagggaggaaggcgcggaggtggtggcggagcaggcttgc 978

                                                                        
Query: 63   tacctcccgtgcaccgatgacgggctgccggtcattggggaaatgcccggggtgaaggga 122
            ||||| |||||||||||||||||  ||||||| || ||||| ||||| || |||||||| 
Sbjct: 979  tacctgccgtgcaccgatgacggtttgccggtgatcggggagatgcctggagtgaagggt 1038

                                                                        
Query: 123  tgctacgttgcaaccgggcacagctgctgggggatcctcaatgctccagttaccggtgca 182
            ||||| || || |||||||||||||||||||||||||||||||||||||  |||||||| 
Sbjct: 1039 tgctatgtcgccaccgggcacagctgctgggggatcctcaatgctccagccaccggtgcc 1098

                                                                        
Query: 183  gcactcgccgagctcatcctcgatgggcaggccaagatcgttgatcttgcgcccttcagc 242
            || ||||| |||||||||||||| ||  | ||||||||||| ||||| ||||| ||||||
Sbjct: 1099 gctctcgcagagctcatcctcgacggcgatgccaagatcgtcgatctcgcgccgttcagc 1158

                             
Query: 243  ccggcaagatttctcaa 259
            || ||||| ||||||||
Sbjct: 1159 ccagcaaggtttctcaa 1175
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>gb|BT017394.1| Zea mays clone EL01N0327H09.c mRNA sequence
          Length = 711

 Score =  202 bits (102), Expect = 8e-49
 Identities = 216/254 (85%)
 Strand = Plus / Plus

                                                                       
Query: 6   gtgtccagccagctcaagacagaggagggcgcagaggtagtcgcggaacaggcctgctac 65
           |||||||||||||| ||||  ||||||||||| ||||| |||||||| ||||| ||||||
Sbjct: 399 gtgtccagccagctgaagaaggaggagggcgctgaggtggtcgcggagcaggcgtgctac 458

                                                                       
Query: 66  ctcccgtgcaccgatgacgggctgccggtcattggggaaatgcccggggtgaagggatgc 125
           || ||||||||||  ||||||||||||||||| ||||| || || || ||||| || |||
Sbjct: 459 ctgccgtgcaccgccgacgggctgccggtcatcggggagataccaggcgtgaaagggtgc 518

                                                                       
Query: 126 tacgttgcaaccgggcacagctgctgggggatcctcaatgctccagttaccggtgcagca 185
           || || || || || |||||||||||||| |||||||||| ||| |  ||||| ||||| 
Sbjct: 519 tatgtggccacgggccacagctgctggggtatcctcaatggtccggccaccggcgcagcc 578

                                                                       
Query: 186 ctcgccgagctcatcctcgatgggcaggccaagatcgttgatcttgcgcccttcagcccg 245
           ||||||||||||||||| || ||  || |||||||||||||||| | ||| |||||||||
Sbjct: 579 ctcgccgagctcatcctggacggcaagtccaagatcgttgatctcgagcctttcagcccg 638

                         
Query: 246 gcaagatttctcaa 259
           ||||| ||||||||
Sbjct: 639 gcaaggtttctcaa 652
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>gb|AY105159.1| Zea mays PCO075778 mRNA sequence
          Length = 604

 Score =  202 bits (102), Expect = 8e-49
 Identities = 216/254 (85%)
 Strand = Plus / Minus

                                                                       
Query: 6   gtgtccagccagctcaagacagaggagggcgcagaggtagtcgcggaacaggcctgctac 65
           |||||||||||||| ||||  ||||||||||| ||||| |||||||| ||||| ||||||
Sbjct: 435 gtgtccagccagctgaagaaggaggagggcgctgaggtggtcgcggagcaggcgtgctac 376

                                                                       
Query: 66  ctcccgtgcaccgatgacgggctgccggtcattggggaaatgcccggggtgaagggatgc 125
           || ||||||||||  ||||||||||||||||| ||||| || || || ||||| || |||
Sbjct: 375 ctgccgtgcaccgccgacgggctgccggtcatcggggagataccaggcgtgaaagggtgc 316

                                                                       
Query: 126 tacgttgcaaccgggcacagctgctgggggatcctcaatgctccagttaccggtgcagca 185
           || || || || || |||||||||||||| |||||||||| ||| |  ||||| ||||| 
Sbjct: 315 tatgtggccacgggccacagctgctggggtatcctcaatggtccggccaccggcgcagcc 256

                                                                       
Query: 186 ctcgccgagctcatcctcgatgggcaggccaagatcgttgatcttgcgcccttcagcccg 245
           ||||||||||||||||| || ||  || |||||||||||||||| | ||| |||||||||
Sbjct: 255 ctcgccgagctcatcctggacggcaagtccaagatcgttgatctcgagcctttcagcccg 196

                         
Query: 246 gcaagatttctcaa 259
           ||||| ||||||||
Sbjct: 195 gcaaggtttctcaa 182
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  129 bits (65), Expect = 1e-26
 Identities = 167/201 (83%)
 Strand = Plus / Minus

                                                                            
Query: 3        agggtgtccagccagctcaagacagaggagggcgcagaggtagtcgcggaacaggcctgc 62
                ||||||||||||||||| ||||  ||||| ||||| ||||| || ||||| ||||| |||
Sbjct: 23298254 agggtgtccagccagctgaagagggaggaaggcgcggaggtggtggcggagcaggcttgc 23298195

                                                                            
Query: 63       tacctcccgtgcaccgatgacgggctgccggtcattggggaaatgcccggggtgaaggga 122
                ||| | |||||||||  ||||||| ||||||| || || || ||||| ||||||||||| 
Sbjct: 23298194 tacatgccgtgcaccagtgacgggttgccggtgatcggagagatgcctggggtgaagggt 23298135

                                                                            
Query: 123      tgctacgttgcaaccgggcacagctgctgggggatcctcaatgctccagttaccggtgca 182
                |||||||| || ||||||||| || | ||||| |||||||| ||||| |  ||||| || 
Sbjct: 23298134 tgctacgtcgccaccgggcacggcgggtggggaatcctcaacgctccggccaccggcgct 23298075

                                     
Query: 183      gcactcgccgagctcatcctc 203
                || ||||| ||||||||||||
Sbjct: 23298074 gcgctcgcggagctcatcctc 23298054
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>dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1103C09
          Length = 163996

 Score =  129 bits (65), Expect = 1e-26
 Identities = 167/201 (83%)
 Strand = Plus / Minus

                                                                         
Query: 3     agggtgtccagccagctcaagacagaggagggcgcagaggtagtcgcggaacaggcctgc 62
             ||||||||||||||||| ||||  ||||| ||||| ||||| || ||||| ||||| |||
Sbjct: 23952 agggtgtccagccagctgaagagggaggaaggcgcggaggtggtggcggagcaggcttgc 23893

                                                                         
Query: 63    tacctcccgtgcaccgatgacgggctgccggtcattggggaaatgcccggggtgaaggga 122
             ||| | |||||||||  ||||||| ||||||| || || || ||||| ||||||||||| 
Sbjct: 23892 tacatgccgtgcaccagtgacgggttgccggtgatcggagagatgcctggggtgaagggt 23833

                                                                         
Query: 123   tgctacgttgcaaccgggcacagctgctgggggatcctcaatgctccagttaccggtgca 182
             |||||||| || ||||||||| || | ||||| |||||||| ||||| |  ||||| || 
Sbjct: 23832 tgctacgtcgccaccgggcacggcgggtggggaatcctcaacgctccggccaccggcgct 23773

                                  
Query: 183   gcactcgccgagctcatcctc 203
             || ||||| ||||||||||||
Sbjct: 23772 gcgctcgcggagctcatcctc 23752
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>dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0451D05
          Length = 148381

 Score =  129 bits (65), Expect = 1e-26
 Identities = 167/201 (83%)
 Strand = Plus / Minus

                                                                         
Query: 3     agggtgtccagccagctcaagacagaggagggcgcagaggtagtcgcggaacaggcctgc 62
             ||||||||||||||||| ||||  ||||| ||||| ||||| || ||||| ||||| |||
Sbjct: 84996 agggtgtccagccagctgaagagggaggaaggcgcggaggtggtggcggagcaggcttgc 84937

                                                                         
Query: 63    tacctcccgtgcaccgatgacgggctgccggtcattggggaaatgcccggggtgaaggga 122
             ||| | |||||||||  ||||||| ||||||| || || || ||||| ||||||||||| 
Sbjct: 84936 tacatgccgtgcaccagtgacgggttgccggtgatcggagagatgcctggggtgaagggt 84877

                                                                         
Query: 123   tgctacgttgcaaccgggcacagctgctgggggatcctcaatgctccagttaccggtgca 182
             |||||||| || ||||||||| || | ||||| |||||||| ||||| |  ||||| || 
Sbjct: 84876 tgctacgtcgccaccgggcacggcgggtggggaatcctcaacgctccggccaccggcgct 84817

                                  
Query: 183   gcactcgccgagctcatcctc 203
             || ||||| ||||||||||||
Sbjct: 84816 gcgctcgcggagctcatcctc 84796
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>gb|AC112676.8| Mus musculus chromosome 9, clone RP23-174F7, complete sequence
          Length = 230293

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 139    ggcacagctgctgggggatcctc 161
              |||||||||||||||||||||||
Sbjct: 190398 ggcacagctgctgggggatcctc 190376
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>dbj|AP002833.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-688I9, complete
              sequence
          Length = 175562

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 17     gctcaagacagaggagggcgc 37
              |||||||||||||||||||||
Sbjct: 118017 gctcaagacagaggagggcgc 118037
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>gb|BC068332.1| Danio rerio zgc:85626, mRNA (cDNA clone MGC:85626 IMAGE:6525318),
            complete cds
          Length = 1888

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 432  ataaataaaccttcaacact 451
            ||||||||||||||||||||
Sbjct: 1546 ataaataaaccttcaacact 1565
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>ref|XM_656096.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3584.2), mRNA
          Length = 1464

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 184 cactcgccgagctcatcctc 203
           ||||||||||||||||||||
Sbjct: 148 cactcgccgagctcatcctc 129
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>gb|AC184077.2| Populus trichocarpa clone Pop1-53L15, complete sequence
          Length = 28233

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                     
Query: 99    ggggaaatgcccggggtgaagggatgctacgttgcaaccgggcacagctgctgggg 154
             ||||| || |||||||||||||| || || ||||| || ||||||| ||| |||||
Sbjct: 16800 ggggagattcccggggtgaagggttgttatgttgccactgggcacaactgttgggg 16855
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>emb|AL772148.6| Zebrafish DNA sequence from clone CH211-153C20 in linkage group 24
              Contains part of a novel gene similar to human DECR2
              (peroxisomal 2,4-dienoyl CoA reductase 2),  a novel gene
              similar to human KIAA0665, a novel gene similar to human
              KIAA0683, a novel gene similar to human KIAA0590, part of a
              novel gene and three CpG islands, complete sequence
          Length = 161218

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 432    ataaataaaccttcaacact 451
              ||||||||||||||||||||
Sbjct: 153647 ataaataaaccttcaacact 153628
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>emb|BX897741.9| Zebrafish DNA sequence from clone DKEY-273O13 in linkage group 5,
             complete sequence
          Length = 168673

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 251   atttctcaacaacaagaaga 270
             ||||||||||||||||||||
Sbjct: 22874 atttctcaacaacaagaaga 22893
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>gb|AF291662.1| Aspergillus nidulans Kex2-like dibasic endoprotease ANPC gene,
            complete cds
          Length = 4688

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 184  cactcgccgagctcatcctc 203
            ||||||||||||||||||||
Sbjct: 3908 cactcgccgagctcatcctc 3889
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>ref|XM_681635.1| PREDICTED: Danio rerio similar to 2,4-dienoyl CoA reductase 2,
            peroxisomal, transcript variant 1 (LOC573514), mRNA
          Length = 1848

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 432  ataaataaaccttcaacact 451
            ||||||||||||||||||||
Sbjct: 1564 ataaataaaccttcaacact 1583
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>ref|XM_703423.1| PREDICTED: Danio rerio similar to 2,4-dienoyl CoA reductase 2,
            peroxisomal, transcript variant 2 (LOC573514), mRNA
          Length = 1796

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 432  ataaataaaccttcaacact 451
            ||||||||||||||||||||
Sbjct: 1512 ataaataaaccttcaacact 1531
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>ref|XM_681286.1| PREDICTED: Danio rerio similar to 2,4-dienoyl CoA reductase 2,
            peroxisomal, transcript variant 1 (LOC573411), mRNA
          Length = 1846

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 432  ataaataaaccttcaacact 451
            ||||||||||||||||||||
Sbjct: 1562 ataaataaaccttcaacact 1581
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>ref|XM_703300.1| PREDICTED: Danio rerio similar to 2,4-dienoyl CoA reductase 2,
            peroxisomal, transcript variant 2 (LOC573411), mRNA
          Length = 1794

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 432  ataaataaaccttcaacact 451
            ||||||||||||||||||||
Sbjct: 1510 ataaataaaccttcaacact 1529
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>ref|NM_213321.1| Danio rerio zgc:85626 (zgc:85626), mRNA
          Length = 1888

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 432  ataaataaaccttcaacact 451
            ||||||||||||||||||||
Sbjct: 1546 ataaataaaccttcaacact 1565
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>gb|AC009490.10| Homo sapiens BAC clone RP11-355A23 from 2, complete sequence
          Length = 158692

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 249   agatttctcaacaacaagaa 268
             ||||||||||||||||||||
Sbjct: 68714 agatttctcaacaacaagaa 68733
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>emb|BX322785.6| Zebrafish DNA sequence from clone DKEYP-78B1 in linkage group 24,
             complete sequence
          Length = 176602

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 432   ataaataaaccttcaacact 451
             ||||||||||||||||||||
Sbjct: 37716 ataaataaaccttcaacact 37735
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>gb|AC151747.3| Ornithorhynchus anatinus chromosome UNK clone OABb-520P24, complete
            sequence
          Length = 142317

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 370  ggggacaccaaatcaaataatgta 393
            |||||||| |||||||||||||||
Sbjct: 3496 ggggacacaaaatcaaataatgta 3519
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>emb|AL954147.12| Zebrafish DNA sequence from clone CH211-117H23 in linkage group 24,
              complete sequence
          Length = 188067

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 432    ataaataaaccttcaacact 451
              ||||||||||||||||||||
Sbjct: 112372 ataaataaaccttcaacact 112391
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>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome
          Length = 2519802

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 484     tgttttatctgatgatggtg 503
               ||||||||||||||||||||
Sbjct: 2204101 tgttttatctgatgatggtg 2204082


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,176,893
Number of Sequences: 3902068
Number of extensions: 4176893
Number of successful extensions: 71070
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70964
Number of HSP's gapped (non-prelim): 106
length of query: 523
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 500
effective length of database: 17,143,297,704
effective search space: 8571648852000
effective search space used: 8571648852000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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