| Clone Name | basd0g09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK068311.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151L11, full insert sequence Length = 1847 Score = 624 bits (315), Expect = e-176 Identities = 423/459 (92%) Strand = Plus / Plus Query: 2 aaatgcggaagcaagcggagcggtggggtgcagagcttcaccaagaggatgtcgagtttg 61 ||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||| Sbjct: 406 aaatgcggaagcaagcggagcggtggggtgctgagcttcaccaggaggatgttgagtttg 465 Query: 62 tggatgtgaagagcagaccgtttgttattcgtagcagcgaccgagaggtgaaatgtcata 121 || |||||||||||||||||||||||||||||||||| || || ||||||||||| |||| Sbjct: 466 tgaatgtgaagagcagaccgtttgttattcgtagcagtgatcgtgaggtgaaatgccata 525 Query: 122 gtgtaatcattgcaactggagctactgcgaagcgacttcgattacctcgtgaagaagaat 181 ||||||||||||| ||||| ||| |||| ||||| |||||||||||||||||||| |||| Sbjct: 526 gtgtaatcattgctactggtgctgctgctaagcgccttcgattacctcgtgaagatgaat 585 Query: 182 tttggagcagaggtatcagcgcatgtgcaatatgtgatggagcatcacctctgtacaagg 241 ||||||| ||||||||||| |||||||||||||||||||||||||| || || | |||| Sbjct: 586 tttggagtagaggtatcagtgcatgtgcaatatgtgatggagcatccccactatttaagg 645 Query: 242 gtcaagttcttgcggtcgttggaggtggagatacagctaccgaggaagcgatatatttga 301 ||||||||||||| || ||||||||||| ||||||||||| |||||||| |||||||||| Sbjct: 646 gtcaagttcttgcagttgttggaggtggtgatacagctacagaggaagctatatatttga 705 Query: 302 caaaatatgcgtgccatgttcatttacttgttcgaagggaccaactacgagcatccaaag 361 | |||||||| | || ||||||||||||||||||| ||| || |||||||||||||||| Sbjct: 706 ccaaatatgcacgtcacgttcatttacttgttcgaaaggatcagctacgagcatccaaag 765 Query: 362 ctatgcaggaccggttgattatggcgaatgtttcagagtactcaacaaccccaacataac 421 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 766 ctatgcaggaccggttgattatggcgaatgtttcagagtactcaacaatcccaacataac 825 Query: 422 agtacatttcaatacagaagctgtggatgttgtcggcaa 460 |||||||||||||||||||||||||||||||||| |||| Sbjct: 826 agtacatttcaatacagaagctgtggatgttgtcagcaa 864
>emb|AJ582621.1|OSA582621 Oryza sativa (japonica cultivar-group) mRNA for NADPH thioredoxin reductase (NtrC gene) Length = 1684 Score = 470 bits (237), Expect = e-129 Identities = 339/373 (90%) Strand = Plus / Plus Query: 2 aaatgcggaagcaagcggagcggtggggtgcagagcttcaccaagaggatgtcgagtttg 61 ||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||| Sbjct: 379 aaatgcggaagcaagcggagcggtggggtgctgagcttcaccaggaggatgttgagtttg 438 Query: 62 tggatgtgaagagcagaccgtttgttattcgtagcagcgaccgagaggtgaaatgtcata 121 || |||||||||||||||||||||||||||||||||| || || ||||||||||| |||| Sbjct: 439 tgaatgtgaagagcagaccgtttgttattcgtagcagtgatcgtgaggtgaaatgccata 498 Query: 122 gtgtaatcattgcaactggagctactgcgaagcgacttcgattacctcgtgaagaagaat 181 ||||||||||||| ||||| ||| |||| ||||| |||||||||||||||||||| |||| Sbjct: 499 gtgtaatcattgctactggtgctgctgctaagcgccttcgattacctcgtgaagatgaat 558 Query: 182 tttggagcagaggtatcagcgcatgtgcaatatgtgatggagcatcacctctgtacaagg 241 ||||||| ||||||||||| |||||||||||||||||||||||||| || || | |||| Sbjct: 559 tttggagtagaggtatcagtgcatgtgcaatatgtgatggagcatccccactatttaagg 618 Query: 242 gtcaagttcttgcggtcgttggaggtggagatacagctaccgaggaagcgatatatttga 301 ||||||||||||| || ||||||||||| ||||||||||| |||||||| |||||||||| Sbjct: 619 gtcaagttcttgcagttgttggaggtggtgatacagctacagaggaagctatatatttga 678 Query: 302 caaaatatgcgtgccatgttcatttacttgttcgaagggaccaactacgagcatccaaag 361 | |||||||| | || ||||||||||||||||||| ||| || |||||||||||||||| Sbjct: 679 ccaaatatgcacgtcacgttcatttacttgttcgaaaggatcagctacgagcatccaaag 738 Query: 362 ctatgcaggaccg 374 ||||||||||||| Sbjct: 739 ctatgcaggaccg 751 Score = 111 bits (56), Expect = 2e-21 Identities = 62/64 (96%) Strand = Plus / Plus Query: 397 gagtactcaacaaccccaacataacagtacatttcaatacagaagctgtggatgttgtcg 456 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 751 gagtactcaacaatcccaacataacagtacatttcaatacagaagctgtggatgttgtca 810 Query: 457 gcaa 460 |||| Sbjct: 811 gcaa 814
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 321 bits (162), Expect = 1e-84 Identities = 243/270 (90%) Strand = Plus / Plus Query: 107 aggtgaaatgtcatagtgtaatcattgcaactggagctactgcgaagcgacttcgattac 166 |||||||||| ||||||||||||||||| ||||| ||| |||| ||||| |||||||||| Sbjct: 27642273 aggtgaaatgccatagtgtaatcattgctactggtgctgctgctaagcgccttcgattac 27642332 Query: 167 ctcgtgaagaagaattttggagcagaggtatcagcgcatgtgcaatatgtgatggagcat 226 |||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 27642333 ctcgtgaagatgaattttggagtagaggtatcagtgcatgtgcaatatgtgatggagcat 27642392 Query: 227 cacctctgtacaagggtcaagttcttgcggtcgttggaggtggagatacagctaccgagg 286 | || || | ||||||||||||||||| || ||||||||||| ||||||||||| |||| Sbjct: 27642393 ccccactatttaagggtcaagttcttgcagttgttggaggtggtgatacagctacagagg 27642452 Query: 287 aagcgatatatttgacaaaatatgcgtgccatgttcatttacttgttcgaagggaccaac 346 |||| ||||||||||| |||||||| | || ||||||||||||||||||| ||| || | Sbjct: 27642453 aagctatatatttgaccaaatatgcacgtcacgttcatttacttgttcgaaaggatcagc 27642512 Query: 347 tacgagcatccaaagctatgcaggaccggt 376 |||||||||||||||||||||||||||||| Sbjct: 27642513 tacgagcatccaaagctatgcaggaccggt 27642542 Score = 159 bits (80), Expect = 1e-35 Identities = 92/96 (95%) Strand = Plus / Plus Query: 3 aatgcggaagcaagcggagcggtggggtgcagagcttcaccaagaggatgtcgagtttgt 62 |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| Sbjct: 27641738 aatgcggaagcaagcggagcggtggggtgctgagcttcaccaggaggatgttgagtttgt 27641797 Query: 63 ggatgtgaagagcagaccgtttgttattcgtagcag 98 | |||||||||||||||||||||||||||||||||| Sbjct: 27641798 gaatgtgaagagcagaccgtttgttattcgtagcag 27641833 Score = 157 bits (79), Expect = 4e-35 Identities = 85/87 (97%) Strand = Plus / Plus Query: 374 ggttgattatggcgaatgtttcagagtactcaacaaccccaacataacagtacatttcaa 433 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 27643177 ggttgattatggcgaatgtttcagagtactcaacaatcccaacataacagtacatttcaa 27643236 Query: 434 tacagaagctgtggatgttgtcggcaa 460 |||||||||||||||||||||| |||| Sbjct: 27643237 tacagaagctgtggatgttgtcagcaa 27643263
>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0047B07 Length = 157797 Score = 321 bits (162), Expect = 1e-84 Identities = 243/270 (90%) Strand = Plus / Plus Query: 107 aggtgaaatgtcatagtgtaatcattgcaactggagctactgcgaagcgacttcgattac 166 |||||||||| ||||||||||||||||| ||||| ||| |||| ||||| |||||||||| Sbjct: 99266 aggtgaaatgccatagtgtaatcattgctactggtgctgctgctaagcgccttcgattac 99325 Query: 167 ctcgtgaagaagaattttggagcagaggtatcagcgcatgtgcaatatgtgatggagcat 226 |||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 99326 ctcgtgaagatgaattttggagtagaggtatcagtgcatgtgcaatatgtgatggagcat 99385 Query: 227 cacctctgtacaagggtcaagttcttgcggtcgttggaggtggagatacagctaccgagg 286 | || || | ||||||||||||||||| || ||||||||||| ||||||||||| |||| Sbjct: 99386 ccccactatttaagggtcaagttcttgcagttgttggaggtggtgatacagctacagagg 99445 Query: 287 aagcgatatatttgacaaaatatgcgtgccatgttcatttacttgttcgaagggaccaac 346 |||| ||||||||||| |||||||| | || ||||||||||||||||||| ||| || | Sbjct: 99446 aagctatatatttgaccaaatatgcacgtcacgttcatttacttgttcgaaaggatcagc 99505 Query: 347 tacgagcatccaaagctatgcaggaccggt 376 |||||||||||||||||||||||||||||| Sbjct: 99506 tacgagcatccaaagctatgcaggaccggt 99535 Score = 159 bits (80), Expect = 1e-35 Identities = 92/96 (95%) Strand = Plus / Plus Query: 3 aatgcggaagcaagcggagcggtggggtgcagagcttcaccaagaggatgtcgagtttgt 62 |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| Sbjct: 98731 aatgcggaagcaagcggagcggtggggtgctgagcttcaccaggaggatgttgagtttgt 98790 Query: 63 ggatgtgaagagcagaccgtttgttattcgtagcag 98 | |||||||||||||||||||||||||||||||||| Sbjct: 98791 gaatgtgaagagcagaccgtttgttattcgtagcag 98826 Score = 157 bits (79), Expect = 4e-35 Identities = 85/87 (97%) Strand = Plus / Plus Query: 374 ggttgattatggcgaatgtttcagagtactcaacaaccccaacataacagtacatttcaa 433 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 100170 ggttgattatggcgaatgtttcagagtactcaacaatcccaacataacagtacatttcaa 100229 Query: 434 tacagaagctgtggatgttgtcggcaa 460 |||||||||||||||||||||| |||| Sbjct: 100230 tacagaagctgtggatgttgtcagcaa 100256
>dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1477_F01 Length = 158792 Score = 321 bits (162), Expect = 1e-84 Identities = 243/270 (90%) Strand = Plus / Plus Query: 107 aggtgaaatgtcatagtgtaatcattgcaactggagctactgcgaagcgacttcgattac 166 |||||||||| ||||||||||||||||| ||||| ||| |||| ||||| |||||||||| Sbjct: 21375 aggtgaaatgccatagtgtaatcattgctactggtgctgctgctaagcgccttcgattac 21434 Query: 167 ctcgtgaagaagaattttggagcagaggtatcagcgcatgtgcaatatgtgatggagcat 226 |||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 21435 ctcgtgaagatgaattttggagtagaggtatcagtgcatgtgcaatatgtgatggagcat 21494 Query: 227 cacctctgtacaagggtcaagttcttgcggtcgttggaggtggagatacagctaccgagg 286 | || || | ||||||||||||||||| || ||||||||||| ||||||||||| |||| Sbjct: 21495 ccccactatttaagggtcaagttcttgcagttgttggaggtggtgatacagctacagagg 21554 Query: 287 aagcgatatatttgacaaaatatgcgtgccatgttcatttacttgttcgaagggaccaac 346 |||| ||||||||||| |||||||| | || ||||||||||||||||||| ||| || | Sbjct: 21555 aagctatatatttgaccaaatatgcacgtcacgttcatttacttgttcgaaaggatcagc 21614 Query: 347 tacgagcatccaaagctatgcaggaccggt 376 |||||||||||||||||||||||||||||| Sbjct: 21615 tacgagcatccaaagctatgcaggaccggt 21644 Score = 159 bits (80), Expect = 1e-35 Identities = 92/96 (95%) Strand = Plus / Plus Query: 3 aatgcggaagcaagcggagcggtggggtgcagagcttcaccaagaggatgtcgagtttgt 62 |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| Sbjct: 20840 aatgcggaagcaagcggagcggtggggtgctgagcttcaccaggaggatgttgagtttgt 20899 Query: 63 ggatgtgaagagcagaccgtttgttattcgtagcag 98 | |||||||||||||||||||||||||||||||||| Sbjct: 20900 gaatgtgaagagcagaccgtttgttattcgtagcag 20935 Score = 157 bits (79), Expect = 4e-35 Identities = 85/87 (97%) Strand = Plus / Plus Query: 374 ggttgattatggcgaatgtttcagagtactcaacaaccccaacataacagtacatttcaa 433 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 22279 ggttgattatggcgaatgtttcagagtactcaacaatcccaacataacagtacatttcaa 22338 Query: 434 tacagaagctgtggatgttgtcggcaa 460 |||||||||||||||||||||| |||| Sbjct: 22339 tacagaagctgtggatgttgtcagcaa 22365
>gb|AY062479.1| Arabidopsis thaliana putative thioredoxin reductase (At2g41680; T32G6.20) mRNA, complete cds Length = 1802 Score = 109 bits (55), Expect = 8e-21 Identities = 214/267 (80%) Strand = Plus / Plus Query: 163 ttacctcgtgaagaagaattttggagcagaggtatcagcgcatgtgcaatatgtgatgga 222 |||||||| || |||||||| ||||| || || || || || ||||| || ||||||||| Sbjct: 617 ttacctcgagaggaagaattctggagtagggggataagtgcttgtgctatctgtgatgga 676 Query: 223 gcatcacctctgtacaagggtcaagttcttgcggtcgttggaggtggagatacagctacc 282 || || ||| | | ||||| ||||| ||||| || |||||||| |||||||| ||||| Sbjct: 677 gcttcgcctttatttaaggggcaagtacttgccgtggttggaggaggagatacggctaca 736 Query: 283 gaggaagcgatatatttgacaaaatatgcgtgccatgttcatttacttgttcgaagggac 342 |||||||| | ||| | || |||||||| | ||||||||||| |||||||| || || Sbjct: 737 gaggaagccttgtatctcacgaaatatgcccgtcatgttcatttgcttgttcgcagagat 796 Query: 343 caactacgagcatccaaagctatgcaggaccggttgattatggcgaatgtttcagagtac 402 || | |||| ||||| |||||||| || ||||| ||||||||||||||||||||| Sbjct: 797 cagttgagagcttccaaggctatgcaagataggttggttatggcgaatgtttcagagtga 856 Query: 403 tcaacaaccccaacataacagtacatt 429 ||||||| || ||||| ||||| |||| Sbjct: 857 tcaacaatccaaacatcacagtgcatt 883
>ref|NM_129731.3| Arabidopsis thaliana disulfide oxidoreductase/ electron transporter/ oxidoreductase/ thioredoxin-disulfide reductase AT2G41680 mRNA, complete cds Length = 1800 Score = 73.8 bits (37), Expect = 4e-10 Identities = 139/173 (80%) Strand = Plus / Plus Query: 163 ttacctcgtgaagaagaattttggagcagaggtatcagcgcatgtgcaatatgtgatgga 222 |||||||| || |||||||| ||||| || || || || || ||||| || ||||||||| Sbjct: 623 ttacctcgagaggaagaattctggagtagggggataagtgcttgtgctatctgtgatgga 682 Query: 223 gcatcacctctgtacaagggtcaagttcttgcggtcgttggaggtggagatacagctacc 282 || || ||| | | ||||| ||||| ||||| || |||||||| |||||||| ||||| Sbjct: 683 gcttcgcctttatttaaggggcaagtacttgccgtggttggaggaggagatacggctaca 742 Query: 283 gaggaagcgatatatttgacaaaatatgcgtgccatgttcatttacttgttcg 335 |||||||| | ||| | || |||||||| | ||||||||||| |||||||| Sbjct: 743 gaggaagccttgtatctcacgaaatatgcccgtcatgttcatttgcttgttcg 795
>gb|BT000516.1| Arabidopsis thaliana putative thioredoxin reductase (At2g41680/T32G6.20) mRNA, complete cds Length = 1590 Score = 73.8 bits (37), Expect = 4e-10 Identities = 139/173 (80%) Strand = Plus / Plus Query: 163 ttacctcgtgaagaagaattttggagcagaggtatcagcgcatgtgcaatatgtgatgga 222 |||||||| || |||||||| ||||| || || || || || ||||| || ||||||||| Sbjct: 607 ttacctcgagaggaagaattctggagtagggggataagtgcttgtgctatctgtgatgga 666 Query: 223 gcatcacctctgtacaagggtcaagttcttgcggtcgttggaggtggagatacagctacc 282 || || ||| | | ||||| ||||| ||||| || |||||||| |||||||| ||||| Sbjct: 667 gcttcgcctttatttaaggggcaagtacttgccgtggttggaggaggagatacggctaca 726 Query: 283 gaggaagcgatatatttgacaaaatatgcgtgccatgttcatttacttgttcg 335 |||||||| | ||| | || |||||||| | ||||||||||| |||||||| Sbjct: 727 gaggaagccttgtatctcacgaaatatgcccgtcatgttcatttgcttgttcg 779
>gb|AC002510.3| Arabidopsis thaliana chromosome 2 clone T32G6 map CIC11C08, complete sequence Length = 91979 Score = 73.8 bits (37), Expect = 4e-10 Identities = 139/173 (80%) Strand = Plus / Minus Query: 163 ttacctcgtgaagaagaattttggagcagaggtatcagcgcatgtgcaatatgtgatgga 222 |||||||| || |||||||| ||||| || || || || || ||||| || ||||||||| Sbjct: 79032 ttacctcgagaggaagaattctggagtagggggataagtgcttgtgctatctgtgatgga 78973 Query: 223 gcatcacctctgtacaagggtcaagttcttgcggtcgttggaggtggagatacagctacc 282 || || ||| | | ||||| ||||| ||||| || |||||||| |||||||| ||||| Sbjct: 78972 gcttcgcctttatttaaggggcaagtacttgccgtggttggaggaggagatacggctaca 78913 Query: 283 gaggaagcgatatatttgacaaaatatgcgtgccatgttcatttacttgttcg 335 |||||||| | ||| | || |||||||| | ||||||||||| |||||||| Sbjct: 78912 gaggaagccttgtatctcacgaaatatgcccgtcatgttcatttgcttgttcg 78860 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 374 ggttgattatggcgaatgtttcagagtactcaacaaccccaacataacagtacatt 429 ||||| ||||||||||||||||||||| ||||||| || ||||| ||||| |||| Sbjct: 78480 ggttggttatggcgaatgtttcagagtgatcaacaatccaaacatcacagtgcatt 78425
>gb|AY056394.1| Arabidopsis thaliana At2g41680/T32G6.20 mRNA, complete cds Length = 1783 Score = 73.8 bits (37), Expect = 4e-10 Identities = 139/173 (80%) Strand = Plus / Plus Query: 163 ttacctcgtgaagaagaattttggagcagaggtatcagcgcatgtgcaatatgtgatgga 222 |||||||| || |||||||| ||||| || || || || || ||||| || ||||||||| Sbjct: 620 ttacctcgagaggaagaattctggagtagggggataagtgcttgtgctatctgtgatgga 679 Query: 223 gcatcacctctgtacaagggtcaagttcttgcggtcgttggaggtggagatacagctacc 282 || || ||| | | ||||| ||||| ||||| || |||||||| |||||||| ||||| Sbjct: 680 gcttcgcctttatttaaggggcaagtacttgccgtggttggaggaggagatacggctaca 739 Query: 283 gaggaagcgatatatttgacaaaatatgcgtgccatgttcatttacttgttcg 335 |||||||| | ||| | || |||||||| | ||||||||||| |||||||| Sbjct: 740 gaggaagccttgtatctcacgaaatatgcccgtcatgttcatttgcttgttcg 792
>emb|BX820757.1|CNS0A9JK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH67ZD05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1726 Score = 73.8 bits (37), Expect = 4e-10 Identities = 139/173 (80%) Strand = Plus / Plus Query: 163 ttacctcgtgaagaagaattttggagcagaggtatcagcgcatgtgcaatatgtgatgga 222 |||||||| || |||||||| ||||| || || || || || ||||| || ||||||||| Sbjct: 613 ttacctcgagaggaagaattctggagtagggggataagtgcttgtgctatctgtgatgga 672 Query: 223 gcatcacctctgtacaagggtcaagttcttgcggtcgttggaggtggagatacagctacc 282 || || ||| | | ||||| ||||| ||||| || |||||||| |||||||| ||||| Sbjct: 673 gcttcgcctttatttaaggggcaagtacttgccgtggttggaggaggagatacggctaca 732 Query: 283 gaggaagcgatatatttgacaaaatatgcgtgccatgttcatttacttgttcg 335 |||||||| | ||| | || |||||||| | ||||||||||| |||||||| Sbjct: 733 gaggaagccttgtatctcacgaaatatgcccgtcatgttcatttgcttgttcg 785
>emb|BX819883.1|CNS0A9GU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS42ZF11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1356 Score = 73.8 bits (37), Expect = 4e-10 Identities = 139/173 (80%) Strand = Plus / Plus Query: 163 ttacctcgtgaagaagaattttggagcagaggtatcagcgcatgtgcaatatgtgatgga 222 |||||||| || |||||||| ||||| || || || || || ||||| || ||||||||| Sbjct: 250 ttacctcgagaggaagaattctggagtagggggataagtgcttgtgctatctgtgatgga 309 Query: 223 gcatcacctctgtacaagggtcaagttcttgcggtcgttggaggtggagatacagctacc 282 || || ||| | | ||||| ||||| ||||| || |||||||| |||||||| ||||| Sbjct: 310 gcttcgcctttatttaaggggcaagtacttgccgtggttggaggaggagatacggctaca 369 Query: 283 gaggaagcgatatatttgacaaaatatgcgtgccatgttcatttacttgttcg 335 |||||||| | ||| | || |||||||| | ||||||||||| |||||||| Sbjct: 370 gaggaagccttgtatctcacgaaatatgcccgtcatgttcatttgcttgttcg 422
>emb|BX820128.1|CNS0A9G2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS78ZB05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1730 Score = 73.8 bits (37), Expect = 4e-10 Identities = 139/173 (80%) Strand = Plus / Plus Query: 163 ttacctcgtgaagaagaattttggagcagaggtatcagcgcatgtgcaatatgtgatgga 222 |||||||| || |||||||| ||||| || || || || || ||||| || ||||||||| Sbjct: 624 ttacctcgagaggaagaattctggagtagggggataagtgcttgtgctatctgtgatgga 683 Query: 223 gcatcacctctgtacaagggtcaagttcttgcggtcgttggaggtggagatacagctacc 282 || || ||| | | ||||| ||||| ||||| || |||||||| |||||||| ||||| Sbjct: 684 gcttcgcctttatttaaggggcaagtacttgccgtggttggaggaggagatacggctaca 743 Query: 283 gaggaagcgatatatttgacaaaatatgcgtgccatgttcatttacttgttcg 335 |||||||| | ||| | || |||||||| | ||||||||||| |||||||| Sbjct: 744 gaggaagccttgtatctcacgaaatatgcccgtcatgttcatttgcttgttcg 796
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 193 ggtatcagcgcatgtgcaatatgtgatgg 221 ||||| ||||||||||||||||||||||| Sbjct: 1148142 ggtattagcgcatgtgcaatatgtgatgg 1148170
>dbj|AB175670.1| Ovophis okinavensis mitochondrial DNA, complete genome Length = 17388 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 401 actcaacaaccccaacataaca 422 |||||||||||||||||||||| Sbjct: 13569 actcaacaaccccaacataaca 13590
>gb|AC157593.4| Mus musculus BAC clone RP23-254B18 from chromosome 16, complete sequence Length = 204167 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 291 gatatatttgacaaaatatgc 311 ||||||||||||||||||||| Sbjct: 52265 gatatatttgacaaaatatgc 52285
>emb|AL929357.1|PFA929357 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5 Length = 341050 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 259 gttggaggtggagatacagct 279 ||||||||||||||||||||| Sbjct: 249327 gttggaggtggagatacagct 249347
>emb|BX470073.8| Zebrafish DNA sequence from clone DKEY-239D21 in linkage group 20, complete sequence Length = 146568 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 407 caaccccaacataacagtaca 427 ||||||||||||||||||||| Sbjct: 50963 caaccccaacataacagtaca 50983
>gb|M59249.1|PFAPHOSKIN P.falciparum 3-phosphoglycerate kinase gene, complete cds Length = 1377 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 259 gttggaggtggagatacagct 279 ||||||||||||||||||||| Sbjct: 1122 gttggaggtggagatacagct 1142
>gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 10, complete sequence Length = 1085720 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 caagaggatgtcgagtttgt 62 |||||||||||||||||||| Sbjct: 962574 caagaggatgtcgagtttgt 962555
>gb|AC129328.4| Mus musculus BAC clone RP23-15O6 from chromosome 17, complete sequence Length = 234041 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 atatatttgacaaaatatgc 311 |||||||||||||||||||| Sbjct: 154499 atatatttgacaaaatatgc 154480
>gb|DQ366735.1| Uncultured Prochlorococcus marinus clone HOT0M-2B5 genomic sequence Length = 35254 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 tgtgcaatatgtgatggagc 224 |||||||||||||||||||| Sbjct: 17891 tgtgcaatatgtgatggagc 17872
>emb|AL357394.11| Human DNA sequence from clone RP11-469B13 on chromosome 10, complete sequence Length = 185850 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 170 gtgaagaagaattttggagcagaggtat 197 ||||||||||| ||||||| |||||||| Sbjct: 104313 gtgaagaagaaatttggagaagaggtat 104340
>gb|AC002553.2| Homo sapiens chromosome , clone CTC-529I10, complete sequence Length = 158314 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 agtttgtggatgtgaagagc 75 |||||||||||||||||||| Sbjct: 109722 agtttgtggatgtgaagagc 109741 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,473,147 Number of Sequences: 3902068 Number of extensions: 3473147 Number of successful extensions: 61713 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61633 Number of HSP's gapped (non-prelim): 79 length of query: 460 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 438 effective length of database: 17,147,199,772 effective search space: 7510473500136 effective search space used: 7510473500136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)