ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd0f03 |
|---|---|
| Clone Library Name | barley_pub |
>NPP_HORVU (Q687E1) Nucleotide pyrophosphatase/phosphodiesterase (EC 3.-.-.-)| (Fragments) Length = 368 Score = 266 bits (681), Expect(2) = 2e-71 Identities = 118/118 (100%), Positives = 118/118 (100%) Frame = +3 Query: 3 WPNTGGFFDVKDSGGECGVPAETMYYYPAENRANFWYKVDYGMFRFCVGDSEHDWREGTP 182 WPNTGGFFDVKDSGGECGVPAETMYYYPAENRANFWYKVDYGMFRFCVGDSEHDWREGTP Sbjct: 129 WPNTGGFFDVKDSGGECGVPAETMYYYPAENRANFWYKVDYGMFRFCVGDSEHDWREGTP 188 Query: 183 QYKFIEECLSTVDRKHQPWLIFTAHRVLGYSSNSWYADQGSFEEPEGRESLQKLWQRY 356 QYKFIEECLSTVDRKHQPWLIFTAHRVLGYSSNSWYADQGSFEEPEGRESLQKLWQRY Sbjct: 189 QYKFIEECLSTVDRKHQPWLIFTAHRVLGYSSNSWYADQGSFEEPEGRESLQKLWQRY 246 Score = 20.8 bits (42), Expect(2) = 2e-71 Identities = 8/8 (100%), Positives = 8/8 (100%) Frame = +1 Query: 358 RVDIAYFG 381 RVDIAYFG Sbjct: 247 RVDIAYFG 254
>PPAF_PHAVU (P80366) Iron(III)-zinc(II) purple acid phosphatase (EC 3.1.3.2)| (PAP) Length = 432 Score = 43.1 bits (100), Expect = 2e-04 Identities = 22/73 (30%), Positives = 34/73 (46%) Frame = +3 Query: 78 YYPAENRANFWYKVDYGMFRFCVGDSEHDWREGTPQYKFIEECLSTVDRKHQPWLIFTAH 257 Y +++ + FWY + V S + GTPQY ++++ L V R PWLI H Sbjct: 227 YEASQSTSPFWYSIKRASAHIIVLSSHIAYGRGTPQYTWLKKELRKVKRSETPWLIVLMH 286 Query: 258 RVLGYSSNSWYAD 296 L S N + + Sbjct: 287 SPLYNSYNHHFME 299
>PPAF_SOYBN (Q09131) Purple acid phosphatase precursor (EC 3.1.3.2)| (Manganese(II) purple acid phosphatase) Length = 464 Score = 42.4 bits (98), Expect = 3e-04 Identities = 23/73 (31%), Positives = 35/73 (47%) Frame = +3 Query: 78 YYPAENRANFWYKVDYGMFRFCVGDSEHDWREGTPQYKFIEECLSTVDRKHQPWLIFTAH 257 Y +++ + FWY + V S + + TPQYK++E+ L V+R PWLI H Sbjct: 254 YKASQSTSPFWYSIKRASAHIIVLASYSAYGKYTPQYKWLEKELPKVNRTETPWLIVLMH 313 Query: 258 RVLGYSSNSWYAD 296 S N Y + Sbjct: 314 SPWYNSYNYHYME 326
>PPA_ASPFI (Q12546) Acid phosphatase precursor (EC 3.1.3.2) (pH 6-optimum acid| phosphatase) (APase6) Length = 614 Score = 35.4 bits (80), Expect = 0.034 Identities = 22/85 (25%), Positives = 35/85 (41%) Frame = +3 Query: 102 NFWYKVDYGMFRFCVGDSEHDWREGTPQYKFIEECLSTVDRKHQPWLIFTAHRVLGYSSN 281 NFWY DYG+ F D E D+ +P++ F E+ T + L S Sbjct: 372 NFWYSFDYGLAHFVSIDGETDF-ANSPEWNFAED--------------VTGNETLPSESE 416 Query: 282 SWYADQGSFEEPEGRESLQKLWQRY 356 ++ D G F G K ++++ Sbjct: 417 TFITDSGPFGNVNGSVHETKSYEQW 441
>PPAF_ARATH (Q38924) Iron(III)-zinc(II) purple acid phosphatase precursor (EC| 3.1.3.2) (PAP) Length = 469 Score = 35.0 bits (79), Expect = 0.044 Identities = 17/50 (34%), Positives = 23/50 (46%) Frame = +3 Query: 108 WYKVDYGMFRFCVGDSEHDWREGTPQYKFIEECLSTVDRKHQPWLIFTAH 257 WY + V + TPQYK++E+ L V+R PWLI H Sbjct: 270 WYSIKRASAYIIVMSCYSSYGIYTPQYKWLEKELQGVNRTETPWLIVLVH 319
>PPA1_ASPNG (P20584) Phosphate-repressible acid phosphatase precursor (EC| 3.1.3.2) (Acid phosphatase PII) Length = 436 Score = 34.3 bits (77), Expect = 0.075 Identities = 21/85 (24%), Positives = 35/85 (41%) Frame = +3 Query: 102 NFWYKVDYGMFRFCVGDSEHDWREGTPQYKFIEECLSTVDRKHQPWLIFTAHRVLGYSSN 281 NFWY DYG+ F D E D+ +P++ F E+ T + L + Sbjct: 247 NFWYSFDYGLAHFVSIDGETDF-ANSPEWNFAED--------------VTGNETLPSEAE 291 Query: 282 SWYADQGSFEEPEGRESLQKLWQRY 356 ++ D G F G K ++++ Sbjct: 292 TFITDSGPFGNVNGSVHETKSYEQW 316
>GLGB_LACAC (Q5FL68) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 638 Score = 31.6 bits (70), Expect = 0.49 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = +3 Query: 54 GVPAETMYYYPAENRANFWYKVDYGMFRFCVGDSEHDWREGTPQYKFIEE 203 G P E + A ++ N D+ FC+ D + +GTP Y+F E+ Sbjct: 211 GTPRELQDFVEACHKENIGVLADWVPGHFCINDDALAYYDGTPCYEFSEK 260
>GUNA_RUMFL (P16169) Cellodextrinase A (EC 3.2.1.-)| Length = 336 Score = 30.8 bits (68), Expect = 0.83 Identities = 17/60 (28%), Positives = 28/60 (46%) Frame = +3 Query: 189 KFIEECLSTVDRKHQPWLIFTAHRVLGYSSNSWYADQGSFEEPEGRESLQKLWQRYPRRH 368 K +E C RK+ L+ H+ G+S + + G F+ E +E LW+ RR+ Sbjct: 73 KVVELC-----RKYGLKLVIDLHKTAGFSFDFGEPESGFFDNKEYQERFYILWEEIARRY 127
>ZN513_HUMAN (Q8N8E2) Zinc finger protein 513| Length = 479 Score = 30.0 bits (66), Expect = 1.4 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -3 Query: 55 PHSPPESLTSKNPPVLG 5 PHSPP L+S+ PP LG Sbjct: 451 PHSPPSVLSSRGPPALG 467
>MDH_RALEJ (Q46YU4) Malate dehydrogenase (EC 1.1.1.37)| Length = 327 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +3 Query: 39 SGGECGVPAETMYYYPAENRANFWYKVDYGM 131 S GE G+PA+TM+ YP AN Y++ G+ Sbjct: 269 SNGEYGIPADTMFGYPV-TCANGKYEIVKGL 298
>YUXL_BACSU (P39839) Probable peptidase yuxL (EC 3.4.21.-)| Length = 657 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/53 (26%), Positives = 21/53 (39%) Frame = +3 Query: 210 STVDRKHQPWLIFTAHRVLGYSSNSWYADQGSFEEPEGRESLQKLWQRYPRRH 368 + R W+ F +GY W + FE+ E KLW R P ++ Sbjct: 537 AVTQRSISNWISFHGVSDIGYFFTDWQLEHDMFEDTE------KLWDRSPLKY 583
>VIT2_PERAM (Q9BPS0) Vitellogenin 2 precursor (Vg-2)| Length = 1876 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/59 (23%), Positives = 25/59 (42%) Frame = -3 Query: 313 SSKEPWSAYHELEE*PSTRCAVKMSHGWCFRSTVDRHSSMNLYCGVPSLQSCSESPTQN 137 S + W AY + T A+KM H W + + + + +P +++PT N Sbjct: 519 SKLDAWKAYRDSVAQAGTPAALKMVHTWIRKEYIKDEEAAKVVAVIP---HAADTPTDN 574
>AGLU_ASPOR (Q12558) Alpha-glucosidase precursor (EC 3.2.1.20) (Maltase) (AGL)| Length = 985 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/52 (30%), Positives = 22/52 (42%) Frame = +3 Query: 198 EECLSTVDRKHQPWLIFTAHRVLGYSSNSWYADQGSFEEPEGRESLQKLWQR 353 E L+T D + PW + + G +S Y D G PE S+ L R Sbjct: 859 EVALTTRDARKTPWSLLASLSSNGTASGQLYLDDGESVYPEDTLSVDFLASR 910
>NUGC_LUPLU (P92309) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 158 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/45 (28%), Positives = 21/45 (46%) Frame = +3 Query: 243 IFTAHRVLGYSSNSWYADQGSFEEPEGRESLQKLWQRYPRRHRLL 377 +F ++LG S W F+E E + L + +PR R+L Sbjct: 88 VFVQGKILGIPSIFWVWKSADFQERESYDMLGISYYNHPRLKRIL 132
>MRAZ_TROWT (Q83N09) Protein mraZ| Length = 142 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -2 Query: 263 HPVRREDEPRLVLPVHRRQALLDELVL 183 HPVR +D+ R VLP R +LD +VL Sbjct: 6 HPVRLDDKNRFVLPAKFR-GMLDSVVL 31
>MRAZ_TROW8 (Q83HJ5) Protein mraZ| Length = 142 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -2 Query: 263 HPVRREDEPRLVLPVHRRQALLDELVL 183 HPVR +D+ R VLP R +LD +VL Sbjct: 6 HPVRLDDKNRFVLPAKFR-GMLDSVVL 31 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.129 0.463 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,878,119 Number of Sequences: 219361 Number of extensions: 846149 Number of successful extensions: 2557 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2521 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2557 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
