ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd0f02 |
|---|---|
| Clone Library Name | barley_pub |
>ATS2_MOUSE (Q8C9W3) ADAMTS-2 precursor (EC 3.4.24.14) (A disintegrin and| metalloproteinase with thrombospondin motifs 2) (ADAM-TS 2) (ADAM-TS2) (Procollagen I/II amino propeptide-processing enzyme) (Procollagen I N-proteinase) (PC I-NP) (Procollagen N-en Length = 1213 Score = 32.3 bits (72), Expect = 0.64 Identities = 15/36 (41%), Positives = 22/36 (61%) Frame = -1 Query: 238 MVMLPPPPAGLRSHASTEPGHGVPRAPASIVQINPM 131 +++LPPPPA +R A+TEP G P A + P+ Sbjct: 26 LLLLPPPPASVRLVAATEPPGGPPGQGAERILAVPV 61
>CAC1C_RAT (P22002) Voltage-dependent L-type calcium channel alpha-1C subunit| (Voltage-gated calcium channel alpha subunit Cav1.2) (Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle) (RAT brain class C) (RBC) Length = 2169 Score = 30.4 bits (67), Expect = 2.4 Identities = 15/27 (55%), Positives = 16/27 (59%) Frame = -1 Query: 223 PPPAGLRSHASTEPGHGVPRAPASIVQ 143 P PAG S ST GHG P +PA VQ Sbjct: 1808 PHPAGYSSTVSTVEGHGPPLSPAVRVQ 1834
>CAC1C_MOUSE (Q01815) Voltage-dependent L-type calcium channel alpha-1C subunit| (Voltage-gated calcium channel alpha subunit Cav1.2) (Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle) (Mouse brain class C) (MBC) (MELC-CC) Length = 2139 Score = 30.4 bits (67), Expect = 2.4 Identities = 15/27 (55%), Positives = 16/27 (59%) Frame = -1 Query: 223 PPPAGLRSHASTEPGHGVPRAPASIVQ 143 P PAG S ST GHG P +PA VQ Sbjct: 1779 PHPAGYSSTVSTVEGHGPPLSPAVRVQ 1805
>CAC1C_HUMAN (Q13936) Voltage-dependent L-type calcium channel alpha-1C subunit| (Voltage-gated calcium channel alpha subunit Cav1.2) (Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle) Length = 2221 Score = 30.0 bits (66), Expect = 3.2 Identities = 15/27 (55%), Positives = 16/27 (59%) Frame = -1 Query: 223 PPPAGLRSHASTEPGHGVPRAPASIVQ 143 P PAG S ST GHG P +PA VQ Sbjct: 1827 PRPAGYPSTVSTVEGHGPPLSPAIRVQ 1853
>S12A2_SQUAC (P55013) Solute carrier family 12 member 2 (Bumetanide-sensitive| sodium-(potassium)-chloride cotransporter 1) (NA-K-CL symporter) (NKCC) Length = 1191 Score = 29.6 bits (65), Expect = 4.1 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Frame = -1 Query: 226 PPPPAGLRSHASTEPGHGVPRAPASIVQINPMASSD*FGRWMV-EGKAHGD 77 P AG++S + EPG G P + P+AS F +V EG GD Sbjct: 6 PASSAGVQSQSGPEPGAGQQEPPPPATPLRPVASQSRFQVDLVTEGGGGGD 56
>YPE1_RHORU (P23138) Hypothetical 28 kDa protein in petA 5'region| Length = 255 Score = 29.6 bits (65), Expect = 4.1 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 5/44 (11%) Frame = +3 Query: 153 DAGARGTP*PGSVEAWDLSPAGGGGSIT----MSRA-SRYVTDK 269 DAG R PG W SP GG G T SRA +RY +D+ Sbjct: 98 DAGLRAAARPGGTRCWPGSPLGGTGPPTNRPPRSRAWNRYRSDR 141
>WIRE_MOUSE (Q6PEV3) WIP-related protein (WASP-interacting protein-related| protein) Length = 440 Score = 29.6 bits (65), Expect = 4.1 Identities = 13/31 (41%), Positives = 13/31 (41%) Frame = -1 Query: 226 PPPPAGLRSHASTEPGHGVPRAPASIVQINP 134 PPPP R H S P G P P S P Sbjct: 340 PPPPPPYRMHGSEPPSRGKPPPPPSRTPAGP 370
>WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protein-related| protein) (WIP-and CR16-homologous protein) Length = 440 Score = 29.6 bits (65), Expect = 4.1 Identities = 13/31 (41%), Positives = 13/31 (41%) Frame = -1 Query: 226 PPPPAGLRSHASTEPGHGVPRAPASIVQINP 134 PPPP R H S P G P P S P Sbjct: 340 PPPPPPYRMHGSEPPSRGKPPPPPSRTPAGP 370
>POLG_PPVSK (Q84934) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3140 Score = 29.3 bits (64), Expect = 5.4 Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Frame = -3 Query: 389 RSNWSGDQAT*LELVVSSPGIIKMYLQHSIGKMLQILI----EILVCDISACSA 240 R+++ GD ++ ++S+PGI+ Y++ + K L++ + + VCD +A A Sbjct: 1959 RNDYIGDDKITMQHIMSNPGIVAYYIKDATQKALKVDLTPHNPLRVCDKTATIA 2012
>POLG_PPVRA (P17767) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3140 Score = 29.3 bits (64), Expect = 5.4 Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Frame = -3 Query: 389 RSNWSGDQAT*LELVVSSPGIIKMYLQHSIGKMLQILI----EILVCDISACSA 240 R+++ GD ++ ++S+PGI+ Y++ + K L++ + + VCD +A A Sbjct: 1959 RNDYIGDDKITMQHIMSNPGIVAYYIKDATQKALKVDLTPHNPLRVCDKTATIA 2012
>POLG_PPVEA (Q01681) Genome polyprotein [Contains: Cytoplasmic inclusion| protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral genome-linked protein (VPG); Nuclear inclusion protein A (NI-A) (NIA) (EC 3.4.22.44) (49 kDa proteinase) (49 kDa-Pro); Nuclear Length = 1518 Score = 29.3 bits (64), Expect = 5.4 Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Frame = -3 Query: 389 RSNWSGDQAT*LELVVSSPGIIKMYLQHSIGKMLQILI----EILVCDISACSA 240 R+++ GD ++ ++S+PGI+ Y++ + K L++ + + VCD +A A Sbjct: 335 RNDYLGDDKITMQHIMSNPGIVAYYIKDATQKALKVDLTPHNPLRVCDKTATIA 388
>POLG_PPVNA (P17766) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3125 Score = 29.3 bits (64), Expect = 5.4 Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Frame = -3 Query: 389 RSNWSGDQAT*LELVVSSPGIIKMYLQHSIGKMLQILI----EILVCDISACSA 240 R+++ GD ++ ++S+PGI+ Y++ + K L++ + + VCD +A A Sbjct: 1959 RNDYIGDDKITMQHIMSNPGIVAYYIKDATQKALKVDLTPHNPLRVCDKTATIA 2012
>POLG_PPVD (P13529) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral gen Length = 3141 Score = 29.3 bits (64), Expect = 5.4 Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Frame = -3 Query: 389 RSNWSGDQAT*LELVVSSPGIIKMYLQHSIGKMLQILI----EILVCDISACSA 240 R+++ GD ++ ++S+PGI+ Y++ + K L++ + + VCD +A A Sbjct: 1960 RNDYIGDDKITMQHIMSNPGIVAYYIKDATQKALKVDLTPHNPLRVCDKTATIA 2013
>YFDF_ECOLI (P76505) Hypothetical protein yfdF| Length = 352 Score = 28.9 bits (63), Expect = 7.1 Identities = 9/25 (36%), Positives = 21/25 (84%) Frame = -2 Query: 468 GLESQKDLEVPANYRITGILKSVIN 394 G+++Q+ +E+PANY+ +++++IN Sbjct: 90 GIDNQEPIELPANYKDKELVRTIIN 114
>NPAS1_HUMAN (Q99742) Neuronal PAS domain protein 1 (Neuronal PAS1) (Member of| PAS protein 5) (MOP5) Length = 590 Score = 28.9 bits (63), Expect = 7.1 Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = -1 Query: 268 LSVTYLLARLMVMLPPPPAGLRS---HASTEPGHGVPRAPASIV 146 LSVTYL R L PP GLR+ A PG R PA++V Sbjct: 90 LSVTYLRLRRFAALGAPPWGLRAAGPPAGLAPGR---RGPAALV 130
>RANB9_MOUSE (P69566) Ran-binding protein 9 (RanBP9) (Ran-binding protein M)| (RanBPM) (B cell antigen receptor Ig beta-associated protein 1) (IBAP-1) Length = 653 Score = 28.9 bits (63), Expect = 7.1 Identities = 19/56 (33%), Positives = 25/56 (44%) Frame = -1 Query: 226 PPPPAGLRSHASTEPGHGVPRAPASIVQINPMASSD*FGRWMVEGKAHGDLATPRQ 59 PPPPA + A+ PG V PA+ V + +A+ G HGD A Q Sbjct: 17 PPPPASAAAPATAPPGLAVGPGPAAGVPVPGLAA----GSSAAAPFPHGDSALNEQ 68
>HERC2_DROME (Q9VR91) HECT domain and RCC1-like domain-containing protein 2| Length = 4912 Score = 28.5 bits (62), Expect = 9.2 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = -3 Query: 239 HGDASATARRTKIPCLDRAGSRRASCPCIHRSN*SHG*QRLIWTLDGRGQGTW-*LGHTK 63 HGD A A TKI L++ + C C + + + G L W G+GT+ LGH Sbjct: 650 HGDTHARAVPTKIAALEQHCVQSVYCGCSYSAAITCGGNLLTW-----GRGTYARLGHGN 704 Query: 62 AVD 54 + D Sbjct: 705 SDD 707
>CAC1C_RABIT (P15381) Voltage-dependent L-type calcium channel alpha-1C subunit| (Voltage-gated calcium channel alpha subunit Cav1.2) (Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle) (Smooth muscle calcium channel blocker receptor) Length = 2171 Score = 28.5 bits (62), Expect = 9.2 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = -1 Query: 223 PPPAGLRSHASTEPGHGVPRAPA 155 P PAG S ST GHG P +PA Sbjct: 1809 PRPAGYPSTVSTVEGHGSPLSPA 1831
>YJS6_YEAST (P46982) Hypothetical 67.3 kDa protein in SWE1-ATP12 intergenic| region Length = 586 Score = 28.5 bits (62), Expect = 9.2 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Frame = -3 Query: 296 KMLQILIEILVCDISACSAHGDASAT---ARRTKIPCLDRA 183 K+LQ+++ +V + CS H D S++ ++ ++P L R+ Sbjct: 9 KILQVIVSAVVLILFFCSVHNDVSSSWLYGKKLRLPVLTRS 49
>NEC1_HUMAN (P29120) Neuroendocrine convertase 1 precursor (EC 3.4.21.93) (NEC| 1) (PC1) (Prohormone convertase 1) (Proprotein convertase 1) Length = 753 Score = 28.5 bits (62), Expect = 9.2 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -1 Query: 115 FGRWMVEGKAHGDLATPRQWISVPGRR 35 FG ++ KA DLA PR W SVP ++ Sbjct: 439 FGFGLLNAKALVDLADPRTWRSVPEKK 465
>VASP_MOUSE (P70460) Vasodilator-stimulated phosphoprotein (VASP)| Length = 374 Score = 28.5 bits (62), Expect = 9.2 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = -1 Query: 226 PPPPAGLRSHASTEPGHGVPRAP 158 PPPP GL S + GHG AP Sbjct: 177 PPPPPGLPSSGVSGAGHGAGAAP 199 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,123,573 Number of Sequences: 219361 Number of extensions: 1586396 Number of successful extensions: 4374 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4133 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4372 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
