ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd0f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC108477.5| Homo sapiens BAC clone RP11-499F19 from 4, comple... 42 1.6
2emb|AL357272.10| Human DNA sequence from clone RP11-111J1 on chr... 40 6.4
3gb|AC131571.4| Homo sapiens chromosome 11, clone RP11-151O13, co... 40 6.4
4emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete ... 40 6.4
5gb|AF453325.2| Bos taurus pancreatic anionic trypsinogen (TRYP8)... 40 6.4
6gb|AC087867.5| Genomic sequence for Mus musculus, clone RP23-183... 40 6.4
7ref|NM_053886.1| Rattus norvegicus lectin, mannose-binding, 1 (L... 40 6.4
8gb|U44129.1|RNU44129 Rattus norvegicus p58 mRNA, complete cds 40 6.4
9gb|AC130477.12| Mus musculus chromosome 15, clone RP23-329G19, c... 40 6.4
10emb|Z83308.1|HSSRL11M2 Human DNA sequence from clone XX-SRL11M20... 40 6.4
11emb|AL583893.17| Mouse DNA sequence from clone RP23-189A18 on ch... 40 6.4

>gb|AC108477.5| Homo sapiens BAC clone RP11-499F19 from 4, complete sequence
          Length = 164194

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 86    tgccttgccctctaccatcca 106
             |||||||||||||||||||||
Sbjct: 93488 tgccttgccctctaccatcca 93508



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>emb|AL357272.10| Human DNA sequence from clone RP11-111J1 on chromosome 6, complete
            sequence
          Length = 94829

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 398  attacagatttgaggatgcc 417
            ||||||||||||||||||||
Sbjct: 3717 attacagatttgaggatgcc 3736



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>gb|AC131571.4| Homo sapiens chromosome 11, clone RP11-151O13, complete sequence
          Length = 179812

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 354    aagttaagttgcttgatctc 373
              ||||||||||||||||||||
Sbjct: 106554 aagttaagttgcttgatctc 106535



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>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29
          Length = 321250

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     cgcccggcggccggggaccg 51
              ||||||||||||||||||||
Sbjct: 315228 cgcccggcggccggggaccg 315209



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>gb|AF453325.2| Bos taurus pancreatic anionic trypsinogen (TRYP8) gene, complete cds;
             germline T-cell receptor beta DJC region genes, partial
             cds
          Length = 151480

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 308   gttgtaaatacatctttatg 327
             ||||||||||||||||||||
Sbjct: 54724 gttgtaaatacatctttatg 54743



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>gb|AC087867.5| Genomic sequence for Mus musculus, clone RP23-183P4, complete sequence
          Length = 217281

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 72    gccaagtcaccatgtgccttgccc 95
             ||||||||||||||||| ||||||
Sbjct: 19507 gccaagtcaccatgtgctttgccc 19530



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>ref|NM_053886.1| Rattus norvegicus lectin, mannose-binding, 1 (Lman1), mRNA
          Length = 1744

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 356  gttaagttgcttgatctcca 375
            ||||||||||||||||||||
Sbjct: 1081 gttaagttgcttgatctcca 1062



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>gb|U44129.1|RNU44129 Rattus norvegicus p58 mRNA, complete cds
          Length = 1744

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 356  gttaagttgcttgatctcca 375
            ||||||||||||||||||||
Sbjct: 1081 gttaagttgcttgatctcca 1062



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>gb|AC130477.12| Mus musculus chromosome 15, clone RP23-329G19, complete sequence
          Length = 191771

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 276   tataagtatttgaagcatctttcc 299
             |||||||||||| |||||||||||
Sbjct: 58450 tataagtatttgcagcatctttcc 58427



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>emb|Z83308.1|HSSRL11M2 Human DNA sequence from clone XX-SRL11M20 on chromosome 11, complete
             sequence
          Length = 44373

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 354   aagttaagttgcttgatctc 373
             ||||||||||||||||||||
Sbjct: 22126 aagttaagttgcttgatctc 22145



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>emb|AL583893.17| Mouse DNA sequence from clone RP23-189A18 on chromosome 15, complete
              sequence
          Length = 184558

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 72     gccaagtcaccatgtgccttgccc 95
              ||||||||||||||||| ||||||
Sbjct: 145746 gccaagtcaccatgtgctttgccc 145723


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,624,536
Number of Sequences: 3902068
Number of extensions: 3624536
Number of successful extensions: 69267
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69247
Number of HSP's gapped (non-prelim): 20
length of query: 475
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 453
effective length of database: 17,147,199,772
effective search space: 7767681496716
effective search space used: 7767681496716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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