ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd0e09 |
|---|---|
| Clone Library Name | barley_pub |
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 68.9 bits (167), Expect = 7e-12 Identities = 34/80 (42%), Positives = 54/80 (67%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 EN GN+LFV+G++SR+ + +L++ FS G V I+ +P T+ SRGFGF++ + ++EA Sbjct: 97 ENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEAT 156 Query: 324 RCIKYLDSSVLEGRVITVEK 383 I L+S GRV+ V+K Sbjct: 157 SAIDNLNSQEFYGRVLNVQK 176
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 66.2 bits (160), Expect = 5e-11 Identities = 35/77 (45%), Positives = 50/77 (64%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G NL+V+GLSS DL+ FS G+VI A +V + + +R +GFVTM+ EA +CI Sbjct: 450 GRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCI 509 Query: 333 KYLDSSVLEGRVITVEK 383 +L + L GR+I+VEK Sbjct: 510 SHLHRTELHGRMISVEK 526
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 65.9 bits (159), Expect = 6e-11 Identities = 36/84 (42%), Positives = 52/84 (61%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G NL+V+GLSS DL+ FS G+V+ A +V + + +R +GFVTM+ EA +CI Sbjct: 406 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCI 465 Query: 333 KYLDSSVLEGRVITVEKILLTAAG 404 +L + L GR+I+VEK AG Sbjct: 466 SHLHRTELHGRMISVEKAKNEPAG 489
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 65.1 bits (157), Expect = 1e-10 Identities = 34/84 (40%), Positives = 52/84 (61%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G N +V+GLSS DL+ FS G+V+ A +V + + +R +GFVTM+ +EA +CI Sbjct: 427 GRNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 486 Query: 333 KYLDSSVLEGRVITVEKILLTAAG 404 +L + L G++I+VEK AG Sbjct: 487 NHLHKTELHGKMISVEKAKSEPAG 510
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 63.9 bits (154), Expect = 2e-10 Identities = 32/77 (41%), Positives = 50/77 (64%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G N +V+GLSS DL+ FS G+V+ A +V + + +R +GFVTM+ +EA +CI Sbjct: 405 GRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCI 464 Query: 333 KYLDSSVLEGRVITVEK 383 +L + L G++I+VEK Sbjct: 465 NHLHKTELHGKMISVEK 481
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 60.5 bits (145), Expect = 3e-09 Identities = 33/80 (41%), Positives = 47/80 (58%) Frame = +3 Query: 165 FVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYLD 344 FV GL+ D DL++ FS G+VID+ I+ D + SRGFGFVT + K I+ ++ Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68 Query: 345 SSVLEGRVITVEKILLTAAG 404 L+GRVITV + +G Sbjct: 69 GKELDGRVITVNEAQSRGSG 88
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 60.5 bits (145), Expect = 3e-09 Identities = 31/77 (40%), Positives = 48/77 (62%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 GN ++V LS + D LE FS +G+V++A ++ D + S+GFGFVT + +E + I Sbjct: 203 GNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI 262 Query: 333 KYLDSSVLEGRVITVEK 383 K LD + L+GR I V + Sbjct: 263 KSLDGADLDGRQIRVSE 279 Score = 46.2 bits (108), Expect = 5e-05 Identities = 25/72 (34%), Positives = 37/72 (51%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LFV L + L + F + G V ++ D T SRGFGFVTM+++ E E + Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152 Query: 342 DSSVLEGRVITV 377 + L+GR + V Sbjct: 153 NGYELDGRPLRV 164
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 59.7 bits (143), Expect = 5e-09 Identities = 33/73 (45%), Positives = 44/73 (60%) Frame = +3 Query: 165 FVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYLD 344 FV GL+ D +LE+ FS GEVID+ I+ D T SRGFGFVT + K + I ++ Sbjct: 9 FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68 Query: 345 SSVLEGRVITVEK 383 L+GR ITV + Sbjct: 69 GKELDGRTITVNE 81
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 59.7 bits (143), Expect = 5e-09 Identities = 29/77 (37%), Positives = 50/77 (64%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 GN L+V LS + D LE F+ +G+V++A ++ D + S+GFGFVT+++ +E ++ I Sbjct: 256 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI 315 Query: 333 KYLDSSVLEGRVITVEK 383 L+ + L+GR I V + Sbjct: 316 NSLNGADLDGRQIRVSE 332 Score = 47.8 bits (112), Expect = 2e-05 Identities = 27/77 (35%), Positives = 37/77 (48%) Frame = +3 Query: 147 NPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAER 326 +P LFV LS + L + F + G V ++ D T SRGFGFVTM+ E E Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEA 155 Query: 327 CIKYLDSSVLEGRVITV 377 + + EGR + V Sbjct: 156 AAQQFNGYEFEGRPLRV 172
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 58.9 bits (141), Expect = 8e-09 Identities = 34/80 (42%), Positives = 46/80 (57%) Frame = +3 Query: 165 FVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYLD 344 FV GL+ DR LE FS GEV+D+ I+ D T SRGFGFVT + K + I+ ++ Sbjct: 11 FVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70 Query: 345 SSVLEGRVITVEKILLTAAG 404 L+GR ITV + +G Sbjct: 71 GQDLDGRSITVNEAQSRGSG 90
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 58.2 bits (139), Expect = 1e-08 Identities = 32/76 (42%), Positives = 44/76 (57%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 P ++V L + + LE+ FS G+V++A +V D T SRGFGFVTM+++ E Sbjct: 242 PAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEA 301 Query: 330 IKYLDSSVLEGRVITV 377 I LD LEGR I V Sbjct: 302 ISALDGQNLEGRAIRV 317 Score = 50.8 bits (120), Expect = 2e-06 Identities = 28/74 (37%), Positives = 43/74 (58%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LFV L+ + + L F G V A ++ + T +SRGFGFVTM+++ EAE ++ Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211 Query: 342 DSSVLEGRVITVEK 383 + L GR++TV K Sbjct: 212 NRYDLNGRLLTVNK 225
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 57.8 bits (138), Expect = 2e-08 Identities = 32/95 (33%), Positives = 53/95 (55%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LFV GL+ ++ LE HFS+ G + + +V D T+ SRGFGF+T N + A ++ + Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67 Query: 342 DSSVLEGRVITVEKILLTAAG*CPQLYGIKFKRYT 446 + L+GR I V+ +A G +G + + Y+ Sbjct: 68 NGESLDGRQIRVDHAGKSARGSRGGAFGGRGRSYS 102
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 57.0 bits (136), Expect = 3e-08 Identities = 33/80 (41%), Positives = 46/80 (57%) Frame = +3 Query: 165 FVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYLD 344 FV GL+ DR LE F+ G+VID+ I+ D T SRGFGFVT + K + I+ ++ Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70 Query: 345 SSVLEGRVITVEKILLTAAG 404 L+GR ITV + +G Sbjct: 71 GQDLDGRSITVNEAQSRGSG 90
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 57.0 bits (136), Expect = 3e-08 Identities = 32/80 (40%), Positives = 46/80 (57%) Frame = +3 Query: 165 FVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYLD 344 FV GL+ +R LE FS GE++D+ I+ D T SRGFGFVT + K + I+ ++ Sbjct: 11 FVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70 Query: 345 SSVLEGRVITVEKILLTAAG 404 L+GR ITV + +G Sbjct: 71 GQDLDGRSITVNEAQSRGSG 90
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 57.0 bits (136), Expect = 3e-08 Identities = 30/81 (37%), Positives = 47/81 (58%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LFV GL+ ++ LE HFS+ G + + +V D T+ SRGFGF+T N + A ++ + Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67 Query: 342 DSSVLEGRVITVEKILLTAAG 404 + L+GR I V+ +A G Sbjct: 68 NGESLDGRQIRVDHAGKSARG 88
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 56.2 bits (134), Expect = 5e-08 Identities = 28/74 (37%), Positives = 48/74 (64%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 +++ L+ +T+ L+ FS +G+V+ A + P T +S GFGFV+ ++ +E E I+ L Sbjct: 186 VYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQAL 245 Query: 342 DSSVLEGRVITVEK 383 ++SVLEG+ I V K Sbjct: 246 NNSVLEGQKIRVNK 259 Score = 40.8 bits (94), Expect = 0.002 Identities = 22/72 (30%), Positives = 38/72 (52%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 L+V + L + +L G + A ++ D ++ SR FGFVTM +++A I+ L Sbjct: 86 LYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKL 145 Query: 342 DSSVLEGRVITV 377 + + + GR I V Sbjct: 146 NDTEIGGRKIKV 157
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 56.2 bits (134), Expect = 5e-08 Identities = 29/70 (41%), Positives = 40/70 (57%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LF+ GLS TD L HF G + D ++ DP T+ SRGFGFVT A ++E + + Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 74 Query: 342 DSSVLEGRVI 371 V +GRV+ Sbjct: 75 PHKV-DGRVV 83 Score = 29.6 bits (65), Expect = 5.0 Identities = 14/57 (24%), Positives = 27/57 (47%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 +FV G+ + L +F G++ I+ D + + RGF FVT + ++ + Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 56.2 bits (134), Expect = 5e-08 Identities = 29/70 (41%), Positives = 40/70 (57%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LF+ GLS TD L HF G + D ++ DP T+ SRGFGFVT A ++E + + Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 74 Query: 342 DSSVLEGRVI 371 V +GRV+ Sbjct: 75 PHKV-DGRVV 83 Score = 29.6 bits (65), Expect = 5.0 Identities = 14/57 (24%), Positives = 27/57 (47%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 +FV G+ + L +F G++ I+ D + + RGF FVT + ++ + Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 56.2 bits (134), Expect = 5e-08 Identities = 29/70 (41%), Positives = 40/70 (57%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LF+ GLS TD L HF G + D ++ DP T+ SRGFGFVT A ++E + + Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 74 Query: 342 DSSVLEGRVI 371 V +GRV+ Sbjct: 75 PHKV-DGRVV 83 Score = 29.6 bits (65), Expect = 5.0 Identities = 14/57 (24%), Positives = 27/57 (47%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 +FV G+ + L +F G++ I+ D + + RGF FVT + ++ + Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 56.2 bits (134), Expect = 5e-08 Identities = 29/70 (41%), Positives = 40/70 (57%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LF+ GLS TD L HF G + D ++ DP T+ SRGFGFVT A ++E + + Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 74 Query: 342 DSSVLEGRVI 371 V +GRV+ Sbjct: 75 PHKV-DGRVV 83 Score = 29.6 bits (65), Expect = 5.0 Identities = 14/57 (24%), Positives = 27/57 (47%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 +FV G+ + L +F G++ I+ D + + RGF FVT + ++ + Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 56.2 bits (134), Expect = 5e-08 Identities = 30/76 (39%), Positives = 42/76 (55%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 P ++V + + D LE+ FS G+V+ A +V D + SRGFGFVTM++ E Sbjct: 189 PTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEA 248 Query: 330 IKYLDSSVLEGRVITV 377 I LD L+GR I V Sbjct: 249 IANLDGQTLDGRTIRV 264 Score = 50.1 bits (118), Expect = 4e-06 Identities = 27/74 (36%), Positives = 41/74 (55%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LFV L + L + F G V A ++ + T SRGFGFVTM+ ++EA++ ++ Sbjct: 99 LFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELY 158 Query: 342 DSSVLEGRVITVEK 383 L GR++TV K Sbjct: 159 SQYDLNGRLLTVNK 172
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 56.2 bits (134), Expect = 5e-08 Identities = 30/82 (36%), Positives = 47/82 (57%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 E +FV GLS + +DL+ +F+ GEV+D +I +DP T SRGFGF+ + E Sbjct: 71 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 130 Query: 324 RCIKYLDSSVLEGRVITVEKIL 389 + + + L+GRVI +K + Sbjct: 131 KVLDQKEHR-LDGRVIDPKKAM 151 Score = 37.7 bits (86), Expect = 0.019 Identities = 20/67 (29%), Positives = 35/67 (52%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 ++P +FV GL+ T+ + ++F GE+ + +DP + RGF F+T KE + Sbjct: 155 KDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFIT---FKEED 211 Query: 324 RCIKYLD 344 K L+ Sbjct: 212 PVKKVLE 218
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 56.2 bits (134), Expect = 5e-08 Identities = 30/82 (36%), Positives = 47/82 (57%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 E +FV GLS + +DL+ +F+ GEV+D +I +DP T SRGFGF+ + E Sbjct: 64 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 123 Query: 324 RCIKYLDSSVLEGRVITVEKIL 389 + + + L+GRVI +K + Sbjct: 124 KVLDQKEHR-LDGRVIDPKKAM 144 Score = 33.9 bits (76), Expect = 0.27 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRL-TDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEA 320 ++P +FV GL+ T+ + ++F GE+ + +DP + RGF F+T KE Sbjct: 148 KDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFIT---FKEE 204 Query: 321 ERCIKYLD 344 E K L+ Sbjct: 205 EPVKKVLE 212
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 55.8 bits (133), Expect = 7e-08 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 +F+ GLS T +DL+ +FS GEV+D ++ LDP T SRGFGFV KE+E K + Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL---FKESESVDKVM 155 Query: 342 DSS--VLEGRVI 371 D L G+VI Sbjct: 156 DQKEHKLNGKVI 167 Score = 35.4 bits (80), Expect = 0.092 Identities = 21/67 (31%), Positives = 33/67 (49%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 + P +FV GLS + + ++F GEV + +D T + RGF F+T KE E Sbjct: 178 KEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT---FKEEE 234 Query: 324 RCIKYLD 344 K ++ Sbjct: 235 PVKKIME 241
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 55.8 bits (133), Expect = 7e-08 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 +F+ GLS T +DL+ +FS GEV+D ++ LDP T SRGFGFV KE+E K + Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL---FKESESVDKVM 155 Query: 342 DSS--VLEGRVI 371 D L G+VI Sbjct: 156 DQKEHKLNGKVI 167 Score = 35.4 bits (80), Expect = 0.092 Identities = 21/67 (31%), Positives = 33/67 (49%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 + P +FV GLS + + ++F GEV + +D T + RGF F+T KE E Sbjct: 178 KEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT---FKEEE 234 Query: 324 RCIKYLD 344 K ++ Sbjct: 235 PVKKIME 241
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 55.8 bits (133), Expect = 7e-08 Identities = 28/74 (37%), Positives = 46/74 (62%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LFV GLS ++ LE+ FS G++ + +V D T+ SRGFGFVT N+ +A+ + + Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 342 DSSVLEGRVITVEK 383 + ++GR I V++ Sbjct: 68 NGKSVDGRQIRVDQ 81
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 55.8 bits (133), Expect = 7e-08 Identities = 28/74 (37%), Positives = 46/74 (62%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LFV GLS ++ LE+ FS G++ + +V D T+ SRGFGFVT N+ +A+ + + Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 342 DSSVLEGRVITVEK 383 + ++GR I V++ Sbjct: 68 NGKSVDGRQIRVDQ 81
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 55.8 bits (133), Expect = 7e-08 Identities = 31/72 (43%), Positives = 41/72 (56%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 ++V + + D LE+ FS G+V+ A +V D T SRGFGFVTMA+ E I L Sbjct: 232 IYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANL 291 Query: 342 DSSVLEGRVITV 377 D L+GR I V Sbjct: 292 DGQSLDGRTIRV 303 Score = 50.4 bits (119), Expect = 3e-06 Identities = 27/74 (36%), Positives = 43/74 (58%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LFV L + L + F G V A ++ + T +SRGFGFVTM+ ++EAE+ ++ Sbjct: 138 LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMY 197 Query: 342 DSSVLEGRVITVEK 383 + + GR++TV K Sbjct: 198 NRYDVNGRLLTVNK 211
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 55.5 bits (132), Expect = 9e-08 Identities = 31/74 (41%), Positives = 44/74 (59%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIK 335 N ++V LS + D L++ FS +G V+DA +V D + SRGFGFVT ++ KE I Sbjct: 208 NRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAID 267 Query: 336 YLDSSVLEGRVITV 377 L+ L+GR I V Sbjct: 268 SLNGIDLDGRSIRV 281 Score = 40.8 bits (94), Expect = 0.002 Identities = 24/72 (33%), Positives = 34/72 (47%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LFV L + L F G V ++ D + SRGFGFVTM+ +E E + Sbjct: 90 LFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQF 149 Query: 342 DSSVLEGRVITV 377 + ++GR I V Sbjct: 150 NGYEIDGRAIRV 161
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 55.5 bits (132), Expect = 9e-08 Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 2/80 (2%) Frame = +3 Query: 147 NPGNN--LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEA 320 NP N L V GLS T+RDL + FS G + D SIV D +R SRGF FV N+ +A Sbjct: 113 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDA 172 Query: 321 ERCIKYLDSSVLEGRVITVE 380 + + + L+GR I V+ Sbjct: 173 KEAKERANGMELDGRRIRVD 192
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 55.5 bits (132), Expect = 9e-08 Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 2/80 (2%) Frame = +3 Query: 147 NPGNN--LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEA 320 NP N L V GLS T+RDL + FS G + D SIV D +R SRGF FV N+ +A Sbjct: 113 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDA 172 Query: 321 ERCIKYLDSSVLEGRVITVE 380 + + + L+GR I V+ Sbjct: 173 KEAKERANGMELDGRRIRVD 192
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 55.5 bits (132), Expect = 9e-08 Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 2/80 (2%) Frame = +3 Query: 147 NPGNN--LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEA 320 NP N L V GLS T+RDL + FS G + D SIV D +R SRGF FV N+ +A Sbjct: 113 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDA 172 Query: 321 ERCIKYLDSSVLEGRVITVE 380 + + + L+GR I V+ Sbjct: 173 KEAKERANGMELDGRRIRVD 192
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 55.5 bits (132), Expect = 9e-08 Identities = 31/80 (38%), Positives = 44/80 (55%) Frame = +3 Query: 165 FVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYLD 344 FV GL+ D LE+ FS G++ D+ I+ D T SRGFGFVT + K I+ ++ Sbjct: 9 FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMN 68 Query: 345 SSVLEGRVITVEKILLTAAG 404 L+GR ITV + +G Sbjct: 69 GQELDGRNITVNEAQSRGSG 88
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 55.1 bits (131), Expect = 1e-07 Identities = 30/74 (40%), Positives = 43/74 (58%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIK 335 N ++V L+ + LE FS +G+V+DA +V D + SRGFGFVT ++ +E I+ Sbjct: 194 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIE 253 Query: 336 YLDSSVLEGRVITV 377 LD L GR I V Sbjct: 254 SLDGVDLNGRAIRV 267 Score = 44.3 bits (103), Expect = 2e-04 Identities = 25/77 (32%), Positives = 37/77 (48%) Frame = +3 Query: 147 NPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAER 326 +P +FV L L + F G V ++ D T SRGFGFVTM++ +E E Sbjct: 84 SPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEA 143 Query: 327 CIKYLDSSVLEGRVITV 377 + + L+GR + V Sbjct: 144 ACQQFNGYELDGRALRV 160
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 55.1 bits (131), Expect = 1e-07 Identities = 29/75 (38%), Positives = 41/75 (54%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G L+V L +T L + F+ G V + IV D T SRGF FVTM +++EA+ I Sbjct: 113 GGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAI 172 Query: 333 KYLDSSVLEGRVITV 377 + D S + GR + V Sbjct: 173 RLFDGSQVGGRTVKV 187 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/70 (30%), Positives = 37/70 (52%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIK 335 + L+V LS LT + L F+ + + A ++ D + SRGFGF+T ++ + + Sbjct: 217 HKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALD 276 Query: 336 YLDSSVLEGR 365 ++ LEGR Sbjct: 277 TMNEVELEGR 286
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 55.1 bits (131), Expect = 1e-07 Identities = 30/74 (40%), Positives = 43/74 (58%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIK 335 N ++V L+ + LE FS +G+V+DA +V D + SRGFGFVT ++ +E I+ Sbjct: 188 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIE 247 Query: 336 YLDSSVLEGRVITV 377 LD L GR I V Sbjct: 248 SLDGVDLNGRAIRV 261 Score = 44.7 bits (104), Expect = 2e-04 Identities = 25/77 (32%), Positives = 37/77 (48%) Frame = +3 Query: 147 NPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAER 326 +P +FV L L + F G V ++ D T SRGFGFVTM++ +E E Sbjct: 84 SPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEA 143 Query: 327 CIKYLDSSVLEGRVITV 377 + + L+GR + V Sbjct: 144 ACQQFNGYELDGRALRV 160
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 55.1 bits (131), Expect = 1e-07 Identities = 23/46 (50%), Positives = 32/46 (69%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVT 299 LF+ GL R TD L++HF GE++D ++ DP T+ SRGFGF+T Sbjct: 19 LFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFIT 64 Score = 45.8 bits (107), Expect = 7e-05 Identities = 26/76 (34%), Positives = 41/76 (53%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LFV G+ + + DL +F G V+ A+IV+D TR+ RGF FV + ++ I Sbjct: 110 LFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDK-ICLS 168 Query: 342 DSSVLEGRVITVEKIL 389 + + G+ I V+K L Sbjct: 169 RNHQIRGKHIDVKKAL 184
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 55.1 bits (131), Expect = 1e-07 Identities = 28/74 (37%), Positives = 46/74 (62%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LFV GLS ++ LE+ FS G++ + +V D T+ SRGFGFVT N+ +A+ + + Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 342 DSSVLEGRVITVEK 383 + ++GR I V++ Sbjct: 68 NGKSVDGRQIRVDQ 81
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 55.1 bits (131), Expect = 1e-07 Identities = 28/74 (37%), Positives = 46/74 (62%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LFV GLS ++ LE+ FS G++ + +V D T+ SRGFGFVT N+ +A+ + + Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 342 DSSVLEGRVITVEK 383 + ++GR I V++ Sbjct: 68 NGKSVDGRQIRVDQ 81
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 55.1 bits (131), Expect = 1e-07 Identities = 28/74 (37%), Positives = 46/74 (62%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LFV GLS ++ LE+ FS G++ + +V D T+ SRGFGFVT N+ +A+ + + Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 342 DSSVLEGRVITVEK 383 + ++GR I V++ Sbjct: 68 NGKSVDGRQIRVDQ 81
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 55.1 bits (131), Expect = 1e-07 Identities = 31/74 (41%), Positives = 44/74 (59%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIK 335 N ++V LS + D L++ FS +G V+DA +V D + SRGFGFVT ++ KE I Sbjct: 207 NRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAID 266 Query: 336 YLDSSVLEGRVITV 377 L+ L+GR I V Sbjct: 267 SLNGVDLDGRSIRV 280 Score = 42.4 bits (98), Expect = 8e-04 Identities = 25/72 (34%), Positives = 34/72 (47%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LFV L + L F G V ++ D T SRGFGFVTM+ +E E + Sbjct: 89 LFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQF 148 Query: 342 DSSVLEGRVITV 377 + ++GR I V Sbjct: 149 NGYEIDGRAIRV 160
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 54.7 bits (130), Expect = 1e-07 Identities = 28/70 (40%), Positives = 42/70 (60%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LF+ GLS TD L +HF G++ D ++ DP T+ SRGFGFVT + ++E + + Sbjct: 29 LFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSAR 88 Query: 342 DSSVLEGRVI 371 V +GRV+ Sbjct: 89 PHKV-DGRVV 97
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 54.7 bits (130), Expect = 1e-07 Identities = 28/70 (40%), Positives = 42/70 (60%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LF+ GLS TD L +HF G++ D ++ DP T+ SRGFGFVT + ++E + + Sbjct: 29 LFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSAR 88 Query: 342 DSSVLEGRVI 371 V +GRV+ Sbjct: 89 PHKV-DGRVV 97
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 54.7 bits (130), Expect = 1e-07 Identities = 28/70 (40%), Positives = 40/70 (57%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LF+ GLS TD L HF G + D ++ DP T+ SRGFGFVT A +++ + + Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNAR 74 Query: 342 DSSVLEGRVI 371 V +GRV+ Sbjct: 75 PHKV-DGRVV 83 Score = 30.0 bits (66), Expect = 3.9 Identities = 14/57 (24%), Positives = 27/57 (47%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 +FV G+ + L +F G++ I+ D + + RGF FVT + ++ + Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIV 162
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 54.7 bits (130), Expect = 1e-07 Identities = 26/70 (37%), Positives = 41/70 (58%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LF+ GL R TD +L+ HF G ++D ++ DP T+ SRGFGF+T ++ + K Sbjct: 33 LFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSR 92 Query: 342 DSSVLEGRVI 371 + +GRV+ Sbjct: 93 PHKI-DGRVV 101 Score = 38.9 bits (89), Expect = 0.008 Identities = 21/76 (27%), Positives = 38/76 (50%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LFV L ++ + +F G ++D +IV+D T + RGF FV + ++ + Sbjct: 124 LFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQK 183 Query: 342 DSSVLEGRVITVEKIL 389 L G+++ V+K L Sbjct: 184 QHQ-LNGKMVDVKKAL 198
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 54.7 bits (130), Expect = 1e-07 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 +F+ GLS T +DL+ +FS G+V+D ++ LDP T SRGFGFV KE+E K + Sbjct: 97 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVL---FKESESVDKVM 153 Query: 342 DSS--VLEGRVI 371 D L G+VI Sbjct: 154 DQKEHKLNGKVI 165 Score = 35.4 bits (80), Expect = 0.092 Identities = 21/67 (31%), Positives = 33/67 (49%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 + P +FV GLS + + ++F GEV + +D T + RGF F+T KE E Sbjct: 176 KEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT---FKEEE 232 Query: 324 RCIKYLD 344 K ++ Sbjct: 233 PVKKIME 239
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 54.3 bits (129), Expect = 2e-07 Identities = 31/79 (39%), Positives = 45/79 (56%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 +FV GL TD L K+F G++ +A ++ D T +SRG+GFVTMA+ AER K Sbjct: 13 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD- 71 Query: 342 DSSVLEGRVITVEKILLTA 398 + +++GR V L A Sbjct: 72 PNPIIDGRKANVNLAYLGA 90
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 54.3 bits (129), Expect = 2e-07 Identities = 30/76 (39%), Positives = 41/76 (53%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 P ++V L + LE+ FS G+V+ A +V D T SRGFGFVTM++ E Sbjct: 147 PSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDA 206 Query: 330 IKYLDSSVLEGRVITV 377 I LD L+GR + V Sbjct: 207 IAALDGQTLDGRAVRV 222 Score = 51.2 bits (121), Expect = 2e-06 Identities = 28/74 (37%), Positives = 42/74 (56%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LFV L + L F G V A ++ + T SRGFGFVTM+ ++EAE+ ++ L Sbjct: 57 LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELL 116 Query: 342 DSSVLEGRVITVEK 383 + ++GR +TV K Sbjct: 117 NGYDMDGRQLTVNK 130
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 53.9 bits (128), Expect = 2e-07 Identities = 27/73 (36%), Positives = 44/73 (60%) Frame = +3 Query: 165 FVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYLD 344 FV GL+ ++ LE F++ GE++D+ ++ D T SRGFGFVT ++ I+ ++ Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70 Query: 345 SSVLEGRVITVEK 383 L+GR ITV + Sbjct: 71 GKELDGRNITVNQ 83
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 53.1 bits (126), Expect = 4e-07 Identities = 28/70 (40%), Positives = 41/70 (58%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LF+ GLS TD L +HF G + D ++ DP T+ SRGFGFVT + ++E + + Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96 Query: 342 DSSVLEGRVI 371 V +GRV+ Sbjct: 97 PHKV-DGRVV 105 Score = 28.9 bits (63), Expect = 8.6 Identities = 13/46 (28%), Positives = 24/46 (52%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVT 299 +FV G+ + +L +F G++ ++ D + + RGF FVT Sbjct: 128 IFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 173
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 53.1 bits (126), Expect = 4e-07 Identities = 28/70 (40%), Positives = 41/70 (58%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LF+ GLS TD L +HF G + D ++ DP T+ SRGFGFVT + ++E + + Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96 Query: 342 DSSVLEGRVI 371 V +GRV+ Sbjct: 97 PHKV-DGRVV 105 Score = 28.9 bits (63), Expect = 8.6 Identities = 13/46 (28%), Positives = 24/46 (52%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVT 299 +FV G+ + +L +F G++ ++ D + + RGF FVT Sbjct: 128 IFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 173
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 53.1 bits (126), Expect = 4e-07 Identities = 30/79 (37%), Positives = 45/79 (56%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 +FV GL TD L K+F G++ +A ++ D T +SRG+GFVTMA+ A+R K Sbjct: 34 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKD- 92 Query: 342 DSSVLEGRVITVEKILLTA 398 + +++GR V L A Sbjct: 93 PNPIIDGRKANVNLAYLGA 111
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 53.1 bits (126), Expect = 4e-07 Identities = 28/73 (38%), Positives = 44/73 (60%) Frame = +3 Query: 165 FVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYLD 344 FV GL+ + LE+ F+ G+VID+ ++ D T SRGFGFVT ++ + I+ ++ Sbjct: 11 FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMN 70 Query: 345 SSVLEGRVITVEK 383 L+GR ITV + Sbjct: 71 GKELDGRNITVNQ 83
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 53.1 bits (126), Expect = 4e-07 Identities = 28/70 (40%), Positives = 41/70 (58%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LF+ GLS TD L +HF G + D ++ DP T+ SRGFGFVT + ++E + + Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96 Query: 342 DSSVLEGRVI 371 V +GRV+ Sbjct: 97 PHKV-DGRVV 105 Score = 28.9 bits (63), Expect = 8.6 Identities = 13/46 (28%), Positives = 24/46 (52%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVT 299 +FV G+ + +L +F G++ ++ D + + RGF FVT Sbjct: 128 IFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 173
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 52.0 bits (123), Expect = 9e-07 Identities = 25/70 (35%), Positives = 42/70 (60%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 +FV GL+S TD + + +S GE+ D ++ DP T+ SRGFGFVT + E + +K Sbjct: 25 IFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ- 83 Query: 342 DSSVLEGRVI 371 +++G+ + Sbjct: 84 RPHIIDGKTV 93 Score = 43.1 bits (100), Expect = 4e-04 Identities = 20/57 (35%), Positives = 35/57 (61%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 L+V+G+ T+ L ++F+ G V + I+LD T++ RGFGFVT + ++C+ Sbjct: 116 LYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCV 172
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 51.6 bits (122), Expect = 1e-06 Identities = 24/77 (31%), Positives = 41/77 (53%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 P +LFV ++ DL + F G ++D + LD +TR RGF +V ++++AE Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67 Query: 330 IKYLDSSVLEGRVITVE 380 + LD + GR I ++ Sbjct: 68 LHNLDRKWICGRQIEIQ 84
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 51.6 bits (122), Expect = 1e-06 Identities = 24/77 (31%), Positives = 41/77 (53%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 P +LFV ++ DL + F G ++D + LD +TR RGF +V ++++AE Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67 Query: 330 IKYLDSSVLEGRVITVE 380 + LD + GR I ++ Sbjct: 68 LHNLDRKWICGRQIEIQ 84
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 51.6 bits (122), Expect = 1e-06 Identities = 27/70 (38%), Positives = 39/70 (55%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LF+ GLS TD L +HF G + D ++ DP ++ SRGFGFVT + E + + Sbjct: 16 LFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTAR 75 Query: 342 DSSVLEGRVI 371 V +GRV+ Sbjct: 76 PHKV-DGRVV 84 Score = 30.0 bits (66), Expect = 3.9 Identities = 14/57 (24%), Positives = 28/57 (49%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 +FV G+ + L ++F G++ I+ D + + RGF FVT + ++ + Sbjct: 107 IFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIV 163
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 51.6 bits (122), Expect = 1e-06 Identities = 26/60 (43%), Positives = 38/60 (63%) Frame = +3 Query: 204 LEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYLDSSVLEGRVITVEK 383 L FST GEV+++ I+LD T+ SRGFGFVT + + I+ ++ L+GR ITV + Sbjct: 3 LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNE 62
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 51.2 bits (121), Expect = 2e-06 Identities = 22/46 (47%), Positives = 30/46 (65%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVT 299 LF+ GL R TD L+ HF G ++D ++ DP T+ SRGFGF+T Sbjct: 26 LFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFIT 71 Score = 35.4 bits (80), Expect = 0.092 Identities = 20/76 (26%), Positives = 38/76 (50%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LFV GL + L ++F G+++ +IV D T + RGF F+ + ++ I Sbjct: 117 LFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQK 176 Query: 342 DSSVLEGRVITVEKIL 389 S+ + + + V+K + Sbjct: 177 THSI-KNKTLDVKKAI 191
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 51.2 bits (121), Expect = 2e-06 Identities = 28/72 (38%), Positives = 42/72 (58%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 L V+ + R D DL + F G+++D I+ + R S+GFGFVT N +A+R + L Sbjct: 118 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKL 175 Query: 342 DSSVLEGRVITV 377 +V+EGR I V Sbjct: 176 HGTVVEGRKIEV 187
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 51.2 bits (121), Expect = 2e-06 Identities = 29/72 (40%), Positives = 38/72 (52%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LF+ GLS D L F+ G+V+DA +++D T SRGFGFV + A I + Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96 Query: 342 DSSVLEGRVITV 377 D L GR I V Sbjct: 97 DGKELNGRHIRV 108
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 51.2 bits (121), Expect = 2e-06 Identities = 25/74 (33%), Positives = 44/74 (59%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LF+ GL+ + LE+ F+ G + + +V D T+ SRGFGFVT N+ +A+ + + Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66 Query: 342 DSSVLEGRVITVEK 383 + ++GR I V++ Sbjct: 67 NGKSVDGRQIRVDQ 80
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 51.2 bits (121), Expect = 2e-06 Identities = 28/72 (38%), Positives = 42/72 (58%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 L V+ + R D DL + F G+++D I+ + R S+GFGFVT N +A+R + L Sbjct: 119 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKL 176 Query: 342 DSSVLEGRVITV 377 +V+EGR I V Sbjct: 177 HGTVVEGRKIEV 188
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 51.2 bits (121), Expect = 2e-06 Identities = 28/72 (38%), Positives = 42/72 (58%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 L V+ + R D DL + F G+++D I+ + R S+GFGFVT N +A+R + L Sbjct: 123 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKL 180 Query: 342 DSSVLEGRVITV 377 +V+EGR I V Sbjct: 181 HGTVVEGRKIEV 192
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 50.8 bits (120), Expect = 2e-06 Identities = 24/70 (34%), Positives = 42/70 (60%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LF+ GLS T+ L ++ G++ D ++ DP ++ SRGFGFVT +++ E + + Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70 Query: 342 DSSVLEGRVI 371 S+ +GRV+ Sbjct: 71 PHSI-DGRVV 79 Score = 33.9 bits (76), Expect = 0.27 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVT 299 LFV G+ + L +F G++ I+ D + + RGFGFVT Sbjct: 102 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVT 147
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 50.8 bits (120), Expect = 2e-06 Identities = 24/70 (34%), Positives = 42/70 (60%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LF+ GLS T+ L ++ G++ D ++ DP ++ SRGFGFVT +++ E + + Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82 Query: 342 DSSVLEGRVI 371 S+ +GRV+ Sbjct: 83 PHSI-DGRVV 91 Score = 33.9 bits (76), Expect = 0.27 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVT 299 LFV G+ + L +F G++ I+ D + + RGFGFVT Sbjct: 114 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVT 159
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 50.4 bits (119), Expect = 3e-06 Identities = 27/68 (39%), Positives = 39/68 (57%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 NL+V+GL +T ++LE+ FS G +I + I++D T SRG GF+ EAE IK Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185 Query: 339 LDSSVLEG 362 L+ G Sbjct: 186 LNGQKPSG 193 Score = 43.9 bits (102), Expect = 3e-04 Identities = 24/73 (32%), Positives = 37/73 (50%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 NL V L +T + F + GE+ +V D T +S G+GFV + K+AE+ I Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99 Query: 339 LDSSVLEGRVITV 377 L+ L+ + I V Sbjct: 100 LNGLRLQTKTIKV 112 Score = 40.0 bits (92), Expect = 0.004 Identities = 26/72 (36%), Positives = 36/72 (50%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 +FV LS + L + F G V + ++ D T + +GFGFVTM N EA I L Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351 Query: 342 DSSVLEGRVITV 377 + L RV+ V Sbjct: 352 NGYRLGDRVLQV 363
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 50.4 bits (119), Expect = 3e-06 Identities = 27/68 (39%), Positives = 39/68 (57%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 NL+V+GL +T ++LE+ FS G +I + I++D T SRG GF+ EAE IK Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192 Query: 339 LDSSVLEG 362 L+ G Sbjct: 193 LNGQKPSG 200 Score = 43.9 bits (102), Expect = 3e-04 Identities = 24/73 (32%), Positives = 37/73 (50%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 NL V L +T + F + GE+ +V D T +S G+GFV + K+AE+ I Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106 Query: 339 LDSSVLEGRVITV 377 L+ L+ + I V Sbjct: 107 LNGLRLQTKTIKV 119 Score = 40.0 bits (92), Expect = 0.004 Identities = 26/72 (36%), Positives = 36/72 (50%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 +FV LS + L + F G V + ++ D T + +GFGFVTM N EA I L Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358 Query: 342 DSSVLEGRVITV 377 + L RV+ V Sbjct: 359 NGYRLGDRVLQV 370
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 50.4 bits (119), Expect = 3e-06 Identities = 27/68 (39%), Positives = 39/68 (57%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 NL+V+GL +T ++LE+ FS G +I + I++D T SRG GF+ EAE IK Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197 Query: 339 LDSSVLEG 362 L+ G Sbjct: 198 LNGQKPSG 205 Score = 43.9 bits (102), Expect = 3e-04 Identities = 24/73 (32%), Positives = 37/73 (50%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 NL V L +T + F + GE+ +V D T +S G+GFV + K+AE+ I Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111 Query: 339 LDSSVLEGRVITV 377 L+ L+ + I V Sbjct: 112 LNGLRLQTKTIKV 124 Score = 40.0 bits (92), Expect = 0.004 Identities = 26/72 (36%), Positives = 36/72 (50%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 +FV LS + L + F G V + ++ D T + +GFGFVTM N EA I L Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363 Query: 342 DSSVLEGRVITV 377 + L RV+ V Sbjct: 364 NGYRLGDRVLQV 375
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 50.4 bits (119), Expect = 3e-06 Identities = 26/71 (36%), Positives = 42/71 (59%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 ++FV LS +T D++ F+ G++ DA +V D T +S+G+GFV+ N +AE I + Sbjct: 98 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 157 Query: 339 LDSSVLEGRVI 371 + L GR I Sbjct: 158 MGGQWLGGRQI 168
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 50.4 bits (119), Expect = 3e-06 Identities = 25/80 (31%), Positives = 47/80 (58%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 + PG LF+ GL++ ++ LE F G +++ ++ D T +SRGF FVT+ + +A+ Sbjct: 5 DRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAK 63 Query: 324 RCIKYLDSSVLEGRVITVEK 383 + ++ L+G+ I VE+ Sbjct: 64 DAARDMNGKSLDGKAIKVEQ 83
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 50.4 bits (119), Expect = 3e-06 Identities = 26/71 (36%), Positives = 42/71 (59%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 ++FV LS +T D++ F+ G++ DA +V D T +S+G+GFV+ N +AE I + Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174 Query: 339 LDSSVLEGRVI 371 + L GR I Sbjct: 175 MGGQWLGGRQI 185
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 50.1 bits (118), Expect = 4e-06 Identities = 30/72 (41%), Positives = 41/72 (56%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 L V+ + R D DL+ F G V D I+ + R S+GFGFVTM ++AER + L Sbjct: 155 LHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNE--RGSKGFGFVTMERPQDAERARQEL 212 Query: 342 DSSVLEGRVITV 377 S++EGR I V Sbjct: 213 HGSMIEGRKIEV 224
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 50.1 bits (118), Expect = 4e-06 Identities = 25/80 (31%), Positives = 46/80 (57%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 + PG LF+ GL++ ++ LE F G +++ ++ D T +SRGF FVT + +A+ Sbjct: 5 DRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63 Query: 324 RCIKYLDSSVLEGRVITVEK 383 + ++ L+G+ I VE+ Sbjct: 64 DAARDMNGKSLDGKAIKVEQ 83
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 50.1 bits (118), Expect = 4e-06 Identities = 24/73 (32%), Positives = 41/73 (56%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 +L + LS + T DL + F G++ D I D ++R+S+GFGFV ++AE + Sbjct: 20 SLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDR 79 Query: 339 LDSSVLEGRVITV 377 D +++GR + V Sbjct: 80 TDGKLVDGRELRV 92
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 49.7 bits (117), Expect = 5e-06 Identities = 26/62 (41%), Positives = 38/62 (61%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 NL+V+GL +T ++LE+ FS G +I + I++D T SRG GF+ EAE IK Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185 Query: 339 LD 344 L+ Sbjct: 186 LN 187 Score = 44.3 bits (103), Expect = 2e-04 Identities = 25/78 (32%), Positives = 40/78 (51%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 E+ NL L +T +L+ F + GE+ +V D T +S G+GFV + K+AE Sbjct: 35 EDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94 Query: 324 RCIKYLDSSVLEGRVITV 377 + I L+ L+ + I V Sbjct: 95 KAINTLNGLRLQTKTIKV 112 Score = 40.8 bits (94), Expect = 0.002 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Frame = +3 Query: 147 NPGNN--LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEA 320 +PG +FV L+ + L + F G V + ++ D T + +GFGFVTM N EA Sbjct: 271 HPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEA 330 Query: 321 ERCIKYLDSSVLEGRVITV 377 I L+ L RV+ V Sbjct: 331 AMAIASLNGYRLGDRVLQV 349
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 49.7 bits (117), Expect = 5e-06 Identities = 26/62 (41%), Positives = 38/62 (61%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 NL+V+GL +T ++LE+ FS G +I + I++D T SRG GF+ EAE IK Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185 Query: 339 LD 344 L+ Sbjct: 186 LN 187 Score = 47.0 bits (110), Expect = 3e-05 Identities = 26/78 (33%), Positives = 41/78 (52%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 E+ NL V L +T +L+ F + GE+ +V D T +S G+GFV + K+AE Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94 Query: 324 RCIKYLDSSVLEGRVITV 377 + I L+ L+ + I V Sbjct: 95 KAINTLNGLRLQTKTIKV 112 Score = 40.8 bits (94), Expect = 0.002 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Frame = +3 Query: 147 NPGNN--LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEA 320 +PG +FV L+ + L + F G V + ++ D T + +GFGFVTM N EA Sbjct: 271 HPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEA 330 Query: 321 ERCIKYLDSSVLEGRVITV 377 I L+ L RV+ V Sbjct: 331 AMAIASLNGYRLGDRVLQV 349
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 49.7 bits (117), Expect = 5e-06 Identities = 26/62 (41%), Positives = 38/62 (61%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 NL+V+GL +T ++LE+ FS G +I + I++D T SRG GF+ EAE IK Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185 Query: 339 LD 344 L+ Sbjct: 186 LN 187 Score = 47.0 bits (110), Expect = 3e-05 Identities = 26/78 (33%), Positives = 41/78 (52%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 E+ NL V L +T +L+ F + GE+ +V D T +S G+GFV + K+AE Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94 Query: 324 RCIKYLDSSVLEGRVITV 377 + I L+ L+ + I V Sbjct: 95 KAINTLNGLRLQTKTIKV 112 Score = 40.8 bits (94), Expect = 0.002 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Frame = +3 Query: 147 NPGNN--LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEA 320 +PG +FV L+ + L + F G V + ++ D T + +GFGFVTM N EA Sbjct: 271 HPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEA 330 Query: 321 ERCIKYLDSSVLEGRVITV 377 I L+ L RV+ V Sbjct: 331 AMAIASLNGYRLGDRVLQV 349
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 49.7 bits (117), Expect = 5e-06 Identities = 26/71 (36%), Positives = 42/71 (59%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 ++FV LS ++T D++ F+ G + DA +V D T +S+G+GFV+ N +AE I+ Sbjct: 107 HVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166 Query: 339 LDSSVLEGRVI 371 + L GR I Sbjct: 167 MGGQWLGGRQI 177
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 49.7 bits (117), Expect = 5e-06 Identities = 26/62 (41%), Positives = 38/62 (61%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 NL+V+GL +T ++LE+ FS G +I + I++D T SRG GF+ EAE IK Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185 Query: 339 LD 344 L+ Sbjct: 186 LN 187 Score = 47.0 bits (110), Expect = 3e-05 Identities = 26/78 (33%), Positives = 41/78 (52%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 E+ NL V L +T +L+ F + GE+ +V D T +S G+GFV + K+AE Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94 Query: 324 RCIKYLDSSVLEGRVITV 377 + I L+ L+ + I V Sbjct: 95 KAINTLNGLRLQTKTIKV 112 Score = 40.8 bits (94), Expect = 0.002 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Frame = +3 Query: 147 NPGNN--LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEA 320 +PG +FV L+ + L + F G V + ++ D T + +GFGFVTM N EA Sbjct: 272 HPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEA 331 Query: 321 ERCIKYLDSSVLEGRVITV 377 I L+ L RV+ V Sbjct: 332 AMAIASLNGYRLGDRVLQV 350
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 49.3 bits (116), Expect = 6e-06 Identities = 22/54 (40%), Positives = 36/54 (66%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 LF+ GL+ + ++ L HF G + D +V++P T+ SR FGFVT +N++EA+ Sbjct: 9 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEAD 62 Score = 43.1 bits (100), Expect = 4e-04 Identities = 23/55 (41%), Positives = 31/55 (56%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAER 326 LFV GL + + DL +HFS G V A I+ D + + RGFGFV N A++ Sbjct: 100 LFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADK 154
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 49.3 bits (116), Expect = 6e-06 Identities = 25/80 (31%), Positives = 46/80 (57%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 + PG LF+ GL++ ++ LE F G +++ ++ D T +SRGF FVT + +A+ Sbjct: 5 DRPGK-LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAK 63 Query: 324 RCIKYLDSSVLEGRVITVEK 383 + ++ L+G+ I VE+ Sbjct: 64 DVARDMNGKSLDGKAIKVEQ 83
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 49.3 bits (116), Expect = 6e-06 Identities = 26/71 (36%), Positives = 41/71 (57%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 ++FV LS +T D++ F+ G + DA +V D T +S+G+GFV+ N +AE I+ Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166 Query: 339 LDSSVLEGRVI 371 + L GR I Sbjct: 167 MGGQWLGGRQI 177
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 48.9 bits (115), Expect = 8e-06 Identities = 23/77 (29%), Positives = 41/77 (53%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 P +LF+ ++ DL + F G ++D I LD +TR RGF +V ++++AE Sbjct: 8 PNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDA 67 Query: 330 IKYLDSSVLEGRVITVE 380 + L+ + GR I ++ Sbjct: 68 LYNLNRKWVCGRQIEIQ 84
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 48.9 bits (115), Expect = 8e-06 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 4/78 (5%) Frame = +3 Query: 147 NPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAER 326 +PG +F+ GLS + + L +FS GE+ + ++ DP T+ SRGFGFVT A+ ++ Sbjct: 19 DPGK-MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDK 77 Query: 327 CI----KYLDSSVLEGRV 368 + LDS ++ +V Sbjct: 78 VLGQPHHELDSKTIDPKV 95 Score = 45.1 bits (105), Expect = 1e-04 Identities = 22/55 (40%), Positives = 32/55 (58%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAER 326 +FV GLS+ D++++F G+V DA ++ D T RGFGFVT N E+ Sbjct: 112 IFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 48.9 bits (115), Expect = 8e-06 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 4/78 (5%) Frame = +3 Query: 147 NPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAER 326 +PG +F+ GLS + + L +FS GE+ + ++ DP T+ SRGFGFVT A+ ++ Sbjct: 19 DPGK-MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDK 77 Query: 327 CI----KYLDSSVLEGRV 368 + LDS ++ +V Sbjct: 78 VLGQPHHELDSKTIDPKV 95 Score = 45.1 bits (105), Expect = 1e-04 Identities = 22/55 (40%), Positives = 32/55 (58%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAER 326 +FV GLS+ D++++F G+V DA ++ D T RGFGFVT N E+ Sbjct: 112 IFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 48.9 bits (115), Expect = 8e-06 Identities = 25/68 (36%), Positives = 38/68 (55%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 NL+VT L +TD +LEK F G ++ +I+ D T + RG FV +EA+ I Sbjct: 172 NLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISA 231 Query: 339 LDSSVLEG 362 L++ + EG Sbjct: 232 LNNVIPEG 239 Score = 39.3 bits (90), Expect = 0.006 Identities = 25/75 (33%), Positives = 37/75 (49%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G NL V L +TDR+L F T G + I+ D T S G+ FV A+ +A+ I Sbjct: 84 GTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAI 143 Query: 333 KYLDSSVLEGRVITV 377 K L+ + + + V Sbjct: 144 KSLNGVTVRNKRLKV 158
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 48.9 bits (115), Expect = 8e-06 Identities = 25/62 (40%), Positives = 38/62 (61%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 NL+V+GL ++ +++E+ FS G +I + I+LD T SRG GF+ EAE IK Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKG 185 Query: 339 LD 344 L+ Sbjct: 186 LN 187 Score = 42.4 bits (98), Expect = 8e-04 Identities = 26/72 (36%), Positives = 36/72 (50%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 +FV LS + L + F G V + ++ D T + +GFGFVTM N EA I L Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 342 DSSVLEGRVITV 377 + L RV+ V Sbjct: 346 NGYRLGERVLQV 357
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 48.5 bits (114), Expect = 1e-05 Identities = 23/74 (31%), Positives = 39/74 (52%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LFV GLS T+++L HF GE+ ++ DP T SRGF F+ N + ++ + Sbjct: 58 LFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDK-VSAA 116 Query: 342 DSSVLEGRVITVEK 383 D ++ + + +K Sbjct: 117 DEHIINSKKVDPKK 130 Score = 35.0 bits (79), Expect = 0.12 Identities = 12/46 (26%), Positives = 28/46 (60%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVT 299 +FV GL++ ++D +++ +F G +++ + D + +GF F+T Sbjct: 138 IFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFIT 183
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 48.5 bits (114), Expect = 1e-05 Identities = 27/73 (36%), Positives = 37/73 (50%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 NL V L +T +L FS+ GEV A ++ D S G+GFV K+AER I Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80 Query: 339 LDSSVLEGRVITV 377 L+ L+ + I V Sbjct: 81 LNGLRLQSKTIKV 93 Score = 45.4 bits (106), Expect = 9e-05 Identities = 21/58 (36%), Positives = 34/58 (58%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 NL+++GL +T +D+E FS G +I++ +++D T SRG F+ EAE I Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164 Score = 38.1 bits (87), Expect = 0.014 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 5/81 (6%) Frame = +3 Query: 150 PGNN-----LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLK 314 PGN +F+ L + L + F G V + ++ D T + +GFGFVTM N + Sbjct: 237 PGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYE 296 Query: 315 EAERCIKYLDSSVLEGRVITV 377 E+ I L+ L +++ V Sbjct: 297 ESAMAIASLNGYRLGDKILQV 317
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 48.5 bits (114), Expect = 1e-05 Identities = 25/68 (36%), Positives = 37/68 (54%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 NL+VT L +TD +LEK F G ++ +I+ D T RG FV +EA+ I Sbjct: 189 NLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAISA 248 Query: 339 LDSSVLEG 362 L++ + EG Sbjct: 249 LNNVIPEG 256 Score = 38.1 bits (87), Expect = 0.014 Identities = 24/75 (32%), Positives = 37/75 (49%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G NL V L +TDR+L F T G + I+ D T S G+ FV A+ +A+ I Sbjct: 101 GTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAI 160 Query: 333 KYLDSSVLEGRVITV 377 K ++ + + + V Sbjct: 161 KTVNGITVRNKRLKV 175
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 48.5 bits (114), Expect = 1e-05 Identities = 27/74 (36%), Positives = 42/74 (56%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 +L V L+ R + L + F G V D I D +T+ESRGF FV + ++AE + Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74 Query: 339 LDSSVLEGRVITVE 380 +D +VL+GR + V+ Sbjct: 75 MDGAVLDGRELRVQ 88
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 48.5 bits (114), Expect = 1e-05 Identities = 27/74 (36%), Positives = 42/74 (56%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 +L V L+ R + L + F G V D I D +T+ESRGF FV + ++AE + Sbjct: 14 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 73 Query: 339 LDSSVLEGRVITVE 380 +D +VL+GR + V+ Sbjct: 74 MDGAVLDGRELRVQ 87
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 48.5 bits (114), Expect = 1e-05 Identities = 27/74 (36%), Positives = 42/74 (56%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 +L V L+ R + L + F G V D I D +T+ESRGF FV + ++AE + Sbjct: 14 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 73 Query: 339 LDSSVLEGRVITVE 380 +D +VL+GR + V+ Sbjct: 74 MDGAVLDGRELRVQ 87
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 48.5 bits (114), Expect = 1e-05 Identities = 27/74 (36%), Positives = 42/74 (56%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 +L V L+ R + L + F G V D I D +T+ESRGF FV + ++AE + Sbjct: 14 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 73 Query: 339 LDSSVLEGRVITVE 380 +D +VL+GR + V+ Sbjct: 74 MDGAVLDGRELRVQ 87
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 48.5 bits (114), Expect = 1e-05 Identities = 27/74 (36%), Positives = 42/74 (56%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 +L V L+ R + L + F G V D I D +T+ESRGF FV + ++AE + Sbjct: 14 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 73 Query: 339 LDSSVLEGRVITVE 380 +D +VL+GR + V+ Sbjct: 74 MDGAVLDGRELRVQ 87
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 48.1 bits (113), Expect = 1e-05 Identities = 24/68 (35%), Positives = 37/68 (54%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 NL+VT LS +TD LE F G+++ +I+ D T RG F+ +EA+ I Sbjct: 165 NLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISA 224 Query: 339 LDSSVLEG 362 L++ + EG Sbjct: 225 LNNVIPEG 232 Score = 40.4 bits (93), Expect = 0.003 Identities = 26/77 (33%), Positives = 36/77 (46%) Frame = +3 Query: 147 NPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAER 326 N G NL V L + DR+L F T G + I+ D T S G+GFV + +A R Sbjct: 75 NSGTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALR 134 Query: 327 CIKYLDSSVLEGRVITV 377 I L+ + + I V Sbjct: 135 AINNLNGITVRNKRIKV 151
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 48.1 bits (113), Expect = 1e-05 Identities = 27/75 (36%), Positives = 43/75 (57%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIK 335 + L V GL S LTD L +HFS +G V D ++ P SR FGFV + +EA++ + Sbjct: 2 SRLIVRGLPSYLTDARLREHFSQKGAVTDVKLMRRP-DGTSRKFGFVGYRSEQEAQQALD 60 Query: 336 YLDSSVLEGRVITVE 380 Y + + ++ I++E Sbjct: 61 YFNRTFIDTSRISIE 75 Score = 35.4 bits (80), Expect = 0.092 Identities = 19/73 (26%), Positives = 39/73 (53%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 + + L T RD+ FS++G++ + + +RGFGFV + ++EA+ ++ L Sbjct: 721 ILIKNLPFEATKRDIRDLFSSQGQLKSVRLP-KKFDNTTRGFGFVEYSTVREAQSAMEAL 779 Query: 342 DSSVLEGRVITVE 380 + L GR + ++ Sbjct: 780 KHTHLLGRHLVLQ 792 Score = 33.9 bits (76), Expect = 0.27 Identities = 19/70 (27%), Positives = 33/70 (47%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LF+ L + ++ F + G V I LD T+ S+G FV+ ++ A + Sbjct: 316 LFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRAK 375 Query: 342 DSSVLEGRVI 371 D S +GR++ Sbjct: 376 DGSTFQGRLL 385
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 48.1 bits (113), Expect = 1e-05 Identities = 23/70 (32%), Positives = 40/70 (57%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LF+ GLS T+ L + G++ D ++ DP ++ SRGFGFVT + + E + + Sbjct: 11 LFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSAR 70 Query: 342 DSSVLEGRVI 371 ++ +GRV+ Sbjct: 71 PHTI-DGRVV 79 Score = 35.8 bits (81), Expect = 0.070 Identities = 16/46 (34%), Positives = 25/46 (54%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVT 299 LFV G+ + L ++F G++ I+ D + + RGFGFVT Sbjct: 102 LFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVT 147
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 47.8 bits (112), Expect = 2e-05 Identities = 27/73 (36%), Positives = 37/73 (50%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 NL V L +T +L FS+ GEV A ++ D S G+GFV K+AER I Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80 Query: 339 LDSSVLEGRVITV 377 L+ L+ + I V Sbjct: 81 LNGLRLQSKTIKV 93 Score = 45.4 bits (106), Expect = 9e-05 Identities = 21/58 (36%), Positives = 34/58 (58%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 NL+++GL +T +D+E FS G +I++ +++D T SRG F+ EAE I Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164 Score = 39.3 bits (90), Expect = 0.006 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 5/81 (6%) Frame = +3 Query: 150 PGNN-----LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLK 314 PGN +F+ L + L + F G V + ++ D T + +GFGFVTM N + Sbjct: 237 PGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYE 296 Query: 315 EAERCIKYLDSSVLEGRVITV 377 EA I L+ L +++ V Sbjct: 297 EAAMAIASLNGYRLGDKILQV 317
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 47.8 bits (112), Expect = 2e-05 Identities = 23/70 (32%), Positives = 40/70 (57%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LF+ GLS T+ L ++ G + D ++ DP ++ SRGFGFVT + + E + + Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMATR 70 Query: 342 DSSVLEGRVI 371 ++ +GRV+ Sbjct: 71 PHTI-DGRVV 79 Score = 33.1 bits (74), Expect = 0.46 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVT 299 LFV G+ + L ++F G++ I+ D + + RGF FVT Sbjct: 102 LFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVT 147
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 47.8 bits (112), Expect = 2e-05 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 4/73 (5%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY- 338 +F+ GLS + T L ++F GEV + ++ DP T+ SRGFGFVT + ++ + Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81 Query: 339 ---LDSSVLEGRV 368 LDS ++ +V Sbjct: 82 RHELDSKTIDPKV 94 Score = 42.7 bits (99), Expect = 6e-04 Identities = 21/46 (45%), Positives = 28/46 (60%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVT 299 +FV GLS T D++ +F G+V DA ++ D T RGFGFVT Sbjct: 111 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVT 156
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 47.8 bits (112), Expect = 2e-05 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 4/73 (5%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY- 338 +F+ GLS + T L ++F GEV + ++ DP T+ SRGFGFVT + ++ + Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81 Query: 339 ---LDSSVLEGRV 368 LDS ++ +V Sbjct: 82 RHELDSKTIDPKV 94 Score = 42.7 bits (99), Expect = 6e-04 Identities = 21/46 (45%), Positives = 28/46 (60%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVT 299 +FV GLS T D++ +F G+V DA ++ D T RGFGFVT Sbjct: 111 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVT 156
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 47.8 bits (112), Expect = 2e-05 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 4/73 (5%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY- 338 +F+ GLS + T L ++F GEV + ++ DP T+ SRGFGFVT + ++ + Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81 Query: 339 ---LDSSVLEGRV 368 LDS ++ +V Sbjct: 82 RHELDSKTIDPKV 94 Score = 43.5 bits (101), Expect = 3e-04 Identities = 21/46 (45%), Positives = 29/46 (63%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVT 299 +FV GLS T D++++F G+V DA ++ D T RGFGFVT Sbjct: 111 IFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVT 156
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 47.8 bits (112), Expect = 2e-05 Identities = 24/62 (38%), Positives = 38/62 (61%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 NL+V+GL ++ +++E+ FS G +I + I++D T SRG GF+ EAE IK Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185 Query: 339 LD 344 L+ Sbjct: 186 LN 187 Score = 42.4 bits (98), Expect = 8e-04 Identities = 26/72 (36%), Positives = 36/72 (50%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 +FV LS + L + F G V + ++ D T + +GFGFVTM N EA I L Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 342 DSSVLEGRVITV 377 + L RV+ V Sbjct: 346 NGYRLGERVLQV 357
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 47.8 bits (112), Expect = 2e-05 Identities = 27/78 (34%), Positives = 42/78 (53%) Frame = +3 Query: 147 NPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAER 326 +P L V GLS T+RDL + FS G + ++V D T SRGF FV + +++ Sbjct: 116 DPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKE 175 Query: 327 CIKYLDSSVLEGRVITVE 380 ++ + L+GR I V+ Sbjct: 176 AMERANGMELDGRRIRVD 193
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 47.8 bits (112), Expect = 2e-05 Identities = 27/78 (34%), Positives = 42/78 (53%) Frame = +3 Query: 147 NPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAER 326 +P L V GLS T+RDL + FS G + ++V D T SRGF FV + +++ Sbjct: 114 DPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKE 173 Query: 327 CIKYLDSSVLEGRVITVE 380 ++ + L+GR I V+ Sbjct: 174 AMERANGMELDGRRIRVD 191
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 47.4 bits (111), Expect = 2e-05 Identities = 27/81 (33%), Positives = 41/81 (50%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 +FV LS + D L+K F G VI A ++ + T SRG+G+V N AE+ I+ + Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229 Query: 342 DSSVLEGRVITVEKILLTAAG 404 ++GR I + AG Sbjct: 230 QGKEIDGRPINCDMSTSKPAG 250 Score = 45.1 bits (105), Expect = 1e-04 Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRD-LEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAER 326 P + LF+ LS DRD + + F+ GEV+ I P T + +GFG+V +N+++A++ Sbjct: 265 PSDTLFLGNLSFN-ADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKK 323 Query: 327 CIKYLDSSVLEGRVITVE 380 + L ++ R + ++ Sbjct: 324 ALDALQGEYIDNRPVRLD 341
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 47.0 bits (110), Expect = 3e-05 Identities = 24/76 (31%), Positives = 42/76 (55%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 +F+ GL+ T+ +L ++F G V D I+ DP T SRGFGF++ + +K Sbjct: 161 MFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-- 218 Query: 342 DSSVLEGRVITVEKIL 389 +L+G+VI ++ + Sbjct: 219 TQHILDGKVIDPKRAI 234 Score = 46.6 bits (109), Expect = 4e-05 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 2/63 (3%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI--K 335 +FV G+ + ++ E+ FS G +IDA ++LD T +SRGFGFVT + +R K Sbjct: 245 IFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNK 304 Query: 336 YLD 344 ++D Sbjct: 305 FID 307
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 47.0 bits (110), Expect = 3e-05 Identities = 22/73 (30%), Positives = 40/73 (54%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+++ + D+ L + FS G + +++D T SRGFGFV N +EA++ + Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSE 250 Query: 339 LDSSVLEGRVITV 377 ++ + GR+I V Sbjct: 251 MNGKEVNGRMIYV 263 Score = 40.4 bits (93), Expect = 0.003 Identities = 23/83 (27%), Positives = 43/83 (51%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G NL+V L + D L K FS G + A ++ + S+GFGFV ++ +EA + + Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAV 350 Query: 333 KYLDSSVLEGRVITVEKILLTAA 401 + + GR+++ + + + A Sbjct: 351 -----TEMNGRIVSTKPLYVALA 368 Score = 39.7 bits (91), Expect = 0.005 Identities = 21/76 (27%), Positives = 39/76 (51%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 P +L+V L +T+ L + FS G ++ + D TR S G+ ++ +AER Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERA 68 Query: 330 IKYLDSSVLEGRVITV 377 + ++ V++GR I + Sbjct: 69 LDTMNFEVIKGRPIRI 84 Score = 38.5 bits (88), Expect = 0.011 Identities = 21/73 (28%), Positives = 36/73 (49%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+F+ L + ++ L FS G ++ +V D SRG+GFV + A R I+ Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQT 157 Query: 339 LDSSVLEGRVITV 377 ++ +L R + V Sbjct: 158 MNGMLLNDRKVFV 170
>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 494 Score = 46.6 bits (109), Expect = 4e-05 Identities = 25/77 (32%), Positives = 40/77 (51%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 P N LFV L+ TD DLE FS G+++ ++ D T +S + F+ + K E Sbjct: 251 PENVLFVCKLNPVTTDEDLELIFSRFGKILSCEVIRDQKTGDSLQYAFIEFEDKKSCEEA 310 Query: 330 IKYLDSSVLEGRVITVE 380 +DS +++ R I V+ Sbjct: 311 YSKMDSVLIDDRRIHVD 327
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 46.6 bits (109), Expect = 4e-05 Identities = 25/72 (34%), Positives = 39/72 (54%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LFV LS ++ DLEK FS G + + +D T++ +GF FVT + A + + Sbjct: 402 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 461 Query: 342 DSSVLEGRVITV 377 D V +GR++ V Sbjct: 462 DGQVFQGRMLHV 473 Score = 28.9 bits (63), Expect = 8.6 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRES--RGFGFVTMANLKEAERC 329 + L V L + + + + F+ G + D S+ +T++ R FGF+ + +EA+ Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSL---KFTKDGKFRKFGFIGFKSEEEAQAA 58 Query: 330 IKYLDSSVLEGRVITVE 380 + + S ++ ITVE Sbjct: 59 LNHFHRSFIDTTRITVE 75
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 45.8 bits (107), Expect = 7e-05 Identities = 22/73 (30%), Positives = 40/73 (54%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+++ + D+ L + FS G + +++D R SRGFGFV N +EA++ + Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGR-SRGFGFVNYGNHEEAQKAVSE 250 Query: 339 LDSSVLEGRVITV 377 ++ + GR+I V Sbjct: 251 MNGKEVNGRMIYV 263 Score = 38.1 bits (87), Expect = 0.014 Identities = 22/83 (26%), Positives = 42/83 (50%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G NL+V L + D L K F G + A ++ + S+GFGFV ++ +EA + + Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAV 350 Query: 333 KYLDSSVLEGRVITVEKILLTAA 401 + + GR+++ + + + A Sbjct: 351 -----TEMNGRIVSTKPLYVALA 368 Score = 38.1 bits (87), Expect = 0.014 Identities = 21/73 (28%), Positives = 36/73 (49%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+F+ L + ++ L FS G ++ +V D SRG+GFV + A R I+ Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQT 157 Query: 339 LDSSVLEGRVITV 377 ++ +L R + V Sbjct: 158 MNGMLLNDRKVFV 170 Score = 37.0 bits (84), Expect = 0.032 Identities = 19/76 (25%), Positives = 38/76 (50%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 P +L++ L +T+ L + FS G ++ + D TR S + ++ +AER Sbjct: 9 PLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERA 68 Query: 330 IKYLDSSVLEGRVITV 377 + ++ V++GR I + Sbjct: 69 LDTMNFEVIKGRPIRI 84
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 45.8 bits (107), Expect = 7e-05 Identities = 25/80 (31%), Positives = 44/80 (55%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 ++PG LF+ GL+ ++ L+ F G + + ++ D T +SRGF F+T N +A+ Sbjct: 5 DHPGK-LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAK 62 Query: 324 RCIKYLDSSVLEGRVITVEK 383 K ++ L G+ I VE+ Sbjct: 63 NAAKDMNGKSLHGKAIKVEQ 82
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 45.8 bits (107), Expect = 7e-05 Identities = 24/72 (33%), Positives = 38/72 (52%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LFV L T+ DLEK FS G + + +D T++ +GF F+T + A + + Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463 Query: 342 DSSVLEGRVITV 377 D V +GR++ V Sbjct: 464 DGQVFQGRMLHV 475 Score = 31.2 bits (69), Expect = 1.7 Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRES--RGFGFVTMANLKEAERC 329 + L V L + + + + F+ G + D S+ +T++ R FGF+ + +EA++ Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSL---KFTKDGKFRKFGFIGFKSEEEAQKA 58 Query: 330 IKYLDSSVLEGRVITVE 380 K+ + S ++ ITVE Sbjct: 59 QKHFNKSFIDTSRITVE 75 Score = 28.9 bits (63), Expect = 8.6 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLD-PWTRESRGFGFVTMANLKEAERCI 332 + + V + + R++ + FST GE+ + T RGFGFV ++A+R Sbjct: 832 SKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891 Query: 333 KYL-DSSVLEGRVITVE 380 L S+ L GR + +E Sbjct: 892 NALCHSTHLYGRRLVLE 908
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 45.4 bits (106), Expect = 9e-05 Identities = 23/45 (51%), Positives = 27/45 (60%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFV 296 LFV GL T L +FS GEV+D I+ D T +SRGFGFV Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFV 56 Score = 36.6 bits (83), Expect = 0.041 Identities = 15/59 (25%), Positives = 31/59 (52%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 N +FV G+ + +L ++F G V + ++ D + RGFGF+T + + ++ + Sbjct: 113 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 45.4 bits (106), Expect = 9e-05 Identities = 23/45 (51%), Positives = 27/45 (60%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFV 296 LFV GL T L +FS GEV+D I+ D T +SRGFGFV Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFV 56 Score = 36.6 bits (83), Expect = 0.041 Identities = 15/59 (25%), Positives = 31/59 (52%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 N +FV G+ + +L ++F G V + ++ D + RGFGF+T + + ++ + Sbjct: 113 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 45.4 bits (106), Expect = 9e-05 Identities = 23/45 (51%), Positives = 27/45 (60%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFV 296 LFV GL T L +FS GEV+D I+ D T +SRGFGFV Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFV 56 Score = 37.4 bits (85), Expect = 0.024 Identities = 15/59 (25%), Positives = 33/59 (55%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 N +FV G+ + +L+++F+ G V + ++ D + RGFGF+T + + ++ + Sbjct: 114 NKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 172
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 45.1 bits (105), Expect = 1e-04 Identities = 26/76 (34%), Positives = 40/76 (52%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 E+ LFV GLS T +L ++F G++ID ++ + + SRGFGFVT A+ Sbjct: 3 EDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVN 62 Query: 324 RCIKYLDSSVLEGRVI 371 ++ L+GR I Sbjct: 63 HVLQN-GPHTLDGRTI 77 Score = 43.1 bits (100), Expect = 4e-04 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G +F+ GL S +T+ DL F+ G+V + I+ D ++SRGFGF++ E Sbjct: 95 GYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVT 154 Query: 333 --KYLDSSVLEGRVITVEK 383 +Y++ L G+ + ++K Sbjct: 155 NERYIN---LNGKQVEIKK 170
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 45.1 bits (105), Expect = 1e-04 Identities = 20/70 (28%), Positives = 39/70 (55%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 NL++ GL TD+DL K G+++ +LD T + +G+GFV + A++ + Sbjct: 59 NLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTA 118 Query: 339 LDSSVLEGRV 368 L +S ++ ++ Sbjct: 119 LKASGVQAQM 128 Score = 34.3 bits (77), Expect = 0.20 Identities = 19/72 (26%), Positives = 36/72 (50%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 E NL+++ L + +++LE G+VI I+ D + SRG GF M + ++ E Sbjct: 133 EQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDT-SGASRGVGFARMESTEKCE 191 Query: 324 RCIKYLDSSVLE 359 I + + ++ Sbjct: 192 AIITHFNGKYIK 203
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 45.1 bits (105), Expect = 1e-04 Identities = 21/73 (28%), Positives = 41/73 (56%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+++ + D+ L++ FS G + +++D R SRGFGFV N +EA++ + Sbjct: 192 NVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGR-SRGFGFVNYGNHEEAQKAVTE 250 Query: 339 LDSSVLEGRVITV 377 ++ + GR++ V Sbjct: 251 MNGKEVNGRMVYV 263 Score = 40.4 bits (93), Expect = 0.003 Identities = 21/78 (26%), Positives = 40/78 (51%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 E P +L++ L +T+ L + FS G ++ + D TR S G+ ++ +AE Sbjct: 7 EYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAE 66 Query: 324 RCIKYLDSSVLEGRVITV 377 R + ++ V++GR I + Sbjct: 67 RALDTMNFEVIKGRPIRI 84 Score = 40.0 bits (92), Expect = 0.004 Identities = 21/73 (28%), Positives = 38/73 (52%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+F+ L + ++ L FS G+++ +V D + SRG+GFV + A R I+ Sbjct: 100 NVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQT 157 Query: 339 LDSSVLEGRVITV 377 ++ +L R + V Sbjct: 158 MNGMLLNDRKVFV 170 Score = 38.9 bits (89), Expect = 0.008 Identities = 22/83 (26%), Positives = 42/83 (50%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G NL+V L + D L K FS G + ++ + S+GFGFV ++ +EA + + Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGG--HSKGFGFVCFSSPEEATKAV 350 Query: 333 KYLDSSVLEGRVITVEKILLTAA 401 + + GR+++ + + + A Sbjct: 351 -----TEMNGRIVSTKPLYVALA 368
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 45.1 bits (105), Expect = 1e-04 Identities = 20/70 (28%), Positives = 39/70 (55%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 NL++ GL TD+DL K G+++ +LD T + +G+GFV + A++ + Sbjct: 63 NLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSA 122 Query: 339 LDSSVLEGRV 368 L +S ++ ++ Sbjct: 123 LKASGVQAQM 132 Score = 34.7 bits (78), Expect = 0.16 Identities = 19/72 (26%), Positives = 36/72 (50%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 E NL+++ L + +++LE G+VI I+ D + SRG GF M + ++ E Sbjct: 137 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCE 195 Query: 324 RCIKYLDSSVLE 359 I + + ++ Sbjct: 196 AVIGHFNGKFIK 207
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 44.7 bits (104), Expect = 2e-04 Identities = 24/73 (32%), Positives = 42/73 (57%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 L + LS + ++ DL+ F+ G V++ +I P + RGFGFV NL EA + +K + Sbjct: 115 LIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKP-DGKMRGFGFVQFKNLLEAGKALKGM 173 Query: 342 DSSVLEGRVITVE 380 + ++GR + V+ Sbjct: 174 NMKEIKGRTVAVD 186 Score = 40.4 bits (93), Expect = 0.003 Identities = 25/75 (33%), Positives = 38/75 (50%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G LFV L LE+ FS G V +V + ++ RGFG+VT + L++ +R + Sbjct: 2 GLTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRAL 61 Query: 333 KYLDSSVLEGRVITV 377 K + + EG I V Sbjct: 62 K--EITTFEGCKINV 74 Score = 33.9 bits (76), Expect = 0.27 Identities = 18/62 (29%), Positives = 29/62 (46%) Frame = +3 Query: 147 NPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAER 326 N G +F+ LS + +L + GE+ IVL P T S+G F + A++ Sbjct: 331 NEGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQK 390 Query: 327 CI 332 C+ Sbjct: 391 CL 392
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 44.7 bits (104), Expect = 2e-04 Identities = 23/71 (32%), Positives = 41/71 (57%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 ++ G NL++ L + D L++ FS G V + ++L+P SRGFGFV +N +EA Sbjct: 328 KSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEAL 386 Query: 324 RCIKYLDSSVL 356 R + ++ ++ Sbjct: 387 RALSEMNGKMI 397 Score = 37.0 bits (84), Expect = 0.032 Identities = 18/73 (24%), Positives = 39/73 (53%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+F+ L + + ++ L + FS+ G ++ + +D T S+G+GFV + A+ I Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDK 195 Query: 339 LDSSVLEGRVITV 377 L+ ++ + + V Sbjct: 196 LNGMLMNDKQVFV 208
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 44.7 bits (104), Expect = 2e-04 Identities = 26/73 (35%), Positives = 39/73 (53%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 ++FV L ++ D LE+HF G ++ IV +P T RGFG+V N +K Sbjct: 292 SVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALK- 350 Query: 339 LDSSVLEGRVITV 377 L++S L GR + V Sbjct: 351 LNNSELMGRKLRV 363
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 44.7 bits (104), Expect = 2e-04 Identities = 20/70 (28%), Positives = 39/70 (55%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 NL++ GL TD+DL K G+++ +LD T + +G+GFV + A++ + Sbjct: 57 NLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTA 116 Query: 339 LDSSVLEGRV 368 L +S ++ ++ Sbjct: 117 LKASGVQAQM 126 Score = 34.3 bits (77), Expect = 0.20 Identities = 19/72 (26%), Positives = 36/72 (50%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 E NL+++ L + +++LE G+VI I+ D + SRG GF M + ++ E Sbjct: 131 EQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDT-SGTSRGVGFARMESTEKCE 189 Query: 324 RCIKYLDSSVLE 359 I + + ++ Sbjct: 190 AIITHFNGKYIK 201
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 44.3 bits (103), Expect = 2e-04 Identities = 27/77 (35%), Positives = 43/77 (55%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 P LFV GLS T+ L++ F EG V A IV D T S+GFGFV + ++A+ Sbjct: 566 PSKTLFVKGLSEDTTEETLKESF--EGSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAA 622 Query: 330 IKYLDSSVLEGRVITVE 380 + ++ ++G +T++ Sbjct: 623 KEAMEDGEIDGNKVTLD 639
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 44.3 bits (103), Expect = 2e-04 Identities = 22/72 (30%), Positives = 36/72 (50%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LF+ + T+ D K FS GE+ + I +D T +S+GF +V N A L Sbjct: 332 LFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVEL 391 Query: 342 DSSVLEGRVITV 377 D + +GR++ + Sbjct: 392 DKQIFQGRLLHI 403 Score = 30.8 bits (68), Expect = 2.3 Identities = 21/73 (28%), Positives = 35/73 (47%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 + V L T +D+ + FS+ G++ + + + +RGF FV KEAE + L Sbjct: 754 IIVKNLPFEATRKDVFELFSSFGQLKSVRVP-KKFDKSARGFAFVEFLLPKEAENAMDQL 812 Query: 342 DSSVLEGRVITVE 380 L GR + +E Sbjct: 813 QGVHLLGRRLVME 825 Score = 30.0 bits (66), Expect = 3.9 Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 5/82 (6%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRE-----SRGFGFVTMANLK 314 P ++F+ L+ T + L + F + A + P ++ S GFGF + Sbjct: 649 PTVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKE 708 Query: 315 EAERCIKYLDSSVLEGRVITVE 380 +A I ++ ++L+G + ++ Sbjct: 709 QANAVISAMEGTILDGHKLQLK 730
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 44.3 bits (103), Expect = 2e-04 Identities = 27/77 (35%), Positives = 43/77 (55%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 P LFV GLS T+ L++ F EG V A IV D T S+GFGFV + ++A+ Sbjct: 572 PSKTLFVKGLSEDTTEETLKESF--EGSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAA 628 Query: 330 IKYLDSSVLEGRVITVE 380 + ++ ++G +T++ Sbjct: 629 KEAMEDGEIDGNKVTLD 645
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 44.3 bits (103), Expect = 2e-04 Identities = 22/72 (30%), Positives = 39/72 (54%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LF+ + T+ D +K FS GE+ + + +D T S+GF +V A +EA + L Sbjct: 327 LFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIEL 386 Query: 342 DSSVLEGRVITV 377 D + +GR++ + Sbjct: 387 DKQIFQGRLLHI 398 Score = 31.6 bits (70), Expect = 1.3 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 11/86 (12%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFS-----------TEGEVIDASIVLDPWTRESRGFGFVTM 302 + + V GL LT+ +L+KHF+ +G + D I+ + +SR F F+ Sbjct: 2 SRVIVKGLPIYLTEPELQKHFNKRLITTHATSNVDGLITDLRILKNR-EGKSRRFAFIGY 60 Query: 303 ANLKEAERCIKYLDSSVLEGRVITVE 380 N ++A + Y D S + I V+ Sbjct: 61 KNEQDALDAVNYFDGSFIYTSKIEVD 86 Score = 28.9 bits (63), Expect = 8.6 Identities = 19/73 (26%), Positives = 35/73 (47%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 + V L T +D+ + F++ G++ + + + +RGF FV KEAE + L Sbjct: 740 IIVKNLPFEATRKDVFELFNSFGQLKSVRVP-KKFDKSARGFAFVEFVLPKEAENAMDQL 798 Query: 342 DSSVLEGRVITVE 380 L GR + ++ Sbjct: 799 QGVHLLGRRLVMQ 811
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/75 (32%), Positives = 39/75 (52%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G NLF+ L + D L+ FS G + A I+ D + S+GFGFV +EA + + Sbjct: 363 GVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGK-SKGFGFVCYTTPEEANKAV 421 Query: 333 KYLDSSVLEGRVITV 377 ++ +L G+ + V Sbjct: 422 TEMNQRMLAGKPLYV 436 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/73 (28%), Positives = 40/73 (54%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+++ L + +T+++ F GE+ S+V D + RGFGFV AN + A++ + Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDE 320 Query: 339 LDSSVLEGRVITV 377 L+ +G+ + V Sbjct: 321 LNDKEYKGKKLYV 333
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 44.3 bits (103), Expect = 2e-04 Identities = 23/74 (31%), Positives = 37/74 (50%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIK 335 + LFV L+ T L HFST G + + + + T E G F+ N ++A K Sbjct: 221 SRLFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDALAAYK 280 Query: 336 YLDSSVLEGRVITV 377 LD ++ +GR++ V Sbjct: 281 ALDKTIFQGRLLHV 294
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 44.3 bits (103), Expect = 2e-04 Identities = 27/77 (35%), Positives = 43/77 (55%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 P LFV GLS T+ L++ F EG V A IV D T S+GFGFV + ++A+ Sbjct: 569 PSKTLFVKGLSEDTTEETLKESF--EGSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAA 625 Query: 330 IKYLDSSVLEGRVITVE 380 + ++ ++G +T++ Sbjct: 626 KEAMEDGEIDGNKVTLD 642 Score = 29.6 bits (65), Expect = 5.0 Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRE--SRGFGFVTMANLKEAERCIK 335 L ++ LS T+ L++ F A+ + P ++ S+G+ F+ A+ ++A+ + Sbjct: 487 LVLSNLSYSATEETLQEVFEK------ATFIKVPQNQQGKSKGYAFIEFASFEDAKEALN 540 Query: 336 YLDSSVLEGRVITVE 380 + +EGR I +E Sbjct: 541 SCNKMEIEGRTIRLE 555
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 44.3 bits (103), Expect = 2e-04 Identities = 21/72 (29%), Positives = 40/72 (55%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 P + +FV LS T+ DL F G++ + DP + +GFG+VT +++ A++C Sbjct: 364 PSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKC 423 Query: 330 IKYLDSSVLEGR 365 ++ ++ + GR Sbjct: 424 VE-MNGHFIAGR 434 Score = 38.1 bits (87), Expect = 0.014 Identities = 17/73 (23%), Positives = 40/73 (54%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 +FV LS + D+ L + F G ++ A +++D + S+G+G+V + A+ + Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324 Query: 342 DSSVLEGRVITVE 380 + ++GR++ ++ Sbjct: 325 GTKEIDGRMVNLD 337
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 43.9 bits (102), Expect = 3e-04 Identities = 26/73 (35%), Positives = 39/73 (53%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 ++FV L R+ + LE+HF G ++ IV +P T RGFG+V N +K Sbjct: 286 SVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALK- 344 Query: 339 LDSSVLEGRVITV 377 L++S L GR + V Sbjct: 345 LNNSELMGRKLRV 357
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 43.9 bits (102), Expect = 3e-04 Identities = 23/68 (33%), Positives = 36/68 (52%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 NL+VT L +TD L+ F G ++ +I+ D T + RG FV +EA+ I Sbjct: 197 NLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISA 256 Query: 339 LDSSVLEG 362 L++ + EG Sbjct: 257 LNNVIPEG 264 Score = 40.0 bits (92), Expect = 0.004 Identities = 25/75 (33%), Positives = 37/75 (49%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G NL V L +TDR+L F T G + I+ D T S G+ FV A +++R I Sbjct: 109 GTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAI 168 Query: 333 KYLDSSVLEGRVITV 377 K L+ + + + V Sbjct: 169 KSLNGITVRNKRLKV 183
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 43.9 bits (102), Expect = 3e-04 Identities = 23/68 (33%), Positives = 35/68 (51%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 NL+VT L +TD L+ F G ++ +I+ D T RG FV +EA+ I Sbjct: 214 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 273 Query: 339 LDSSVLEG 362 L++ + EG Sbjct: 274 LNNVIPEG 281
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 43.9 bits (102), Expect = 3e-04 Identities = 23/68 (33%), Positives = 35/68 (51%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 NL+VT L +TD L+ F G ++ +I+ D T RG FV +EA+ I Sbjct: 212 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 271 Query: 339 LDSSVLEG 362 L++ + EG Sbjct: 272 LNNVIPEG 279
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 43.5 bits (101), Expect = 3e-04 Identities = 20/72 (27%), Positives = 38/72 (52%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LF+ +S ++ D FS G + + I +D T +S+GF +V ++A R + L Sbjct: 312 LFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSL 371 Query: 342 DSSVLEGRVITV 377 D + +GR++ + Sbjct: 372 DKQIFQGRLLHI 383 Score = 43.5 bits (101), Expect = 3e-04 Identities = 25/75 (33%), Positives = 38/75 (50%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIK 335 + L V GL T+ L + FS +G+V D + + ESR F F+ + AER +K Sbjct: 2 SRLIVKGLPKYYTEEKLREFFSKQGDVTDVKL-MKKRNGESRKFAFIGYKSADAAERAVK 60 Query: 336 YLDSSVLEGRVITVE 380 Y + S ++ I VE Sbjct: 61 YFNKSFIDTARIEVE 75 Score = 30.8 bits (68), Expect = 2.3 Identities = 19/75 (25%), Positives = 36/75 (48%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIK 335 + + + L T +DL + F G++ + + + +RGF FV +KEAE + Sbjct: 717 SKIIIKNLPFEATRKDLLELFGAFGQLKSVRVP-KKFDQSARGFAFVEFNLMKEAETAMS 775 Query: 336 YLDSSVLEGRVITVE 380 L+ L GR + ++ Sbjct: 776 QLEGVHLLGRRLVMQ 790
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 43.5 bits (101), Expect = 3e-04 Identities = 19/70 (27%), Positives = 39/70 (55%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 NL++ GL TD+DL K G+++ +LD T + +G+GFV + A++ + Sbjct: 63 NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSA 122 Query: 339 LDSSVLEGRV 368 L ++ ++ ++ Sbjct: 123 LKANGVQAQM 132 Score = 34.3 bits (77), Expect = 0.20 Identities = 18/72 (25%), Positives = 36/72 (50%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 E NL+++ L + +++LE G+VI ++ D + SRG GF M + ++ E Sbjct: 137 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDS-SGASRGVGFARMESTEKCE 195 Query: 324 RCIKYLDSSVLE 359 I + + ++ Sbjct: 196 AVIGHFNGKFIK 207
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 43.5 bits (101), Expect = 3e-04 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIK 335 ++L V GL + T++DL+++FST GEV+ + D T S+GFGFV E E +K Sbjct: 104 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFV---RFTEYETQVK 160 Query: 336 YLDS-SVLEGR 365 + +++GR Sbjct: 161 VMSQRHMIDGR 171
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 43.5 bits (101), Expect = 3e-04 Identities = 22/77 (28%), Positives = 37/77 (48%) Frame = +3 Query: 147 NPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAER 326 N LF+ + + D K FS GE+ + + LD T +S+GF +V + K A Sbjct: 342 NQTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVN 401 Query: 327 CIKYLDSSVLEGRVITV 377 LD + +GR++ + Sbjct: 402 AYVELDKQIFQGRLLHI 418 Score = 31.2 bits (69), Expect = 1.7 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 15/89 (16%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHF---------------STEGEVIDASIVLDPWTRESRGFG 290 + + V GL LTD +L +HF S + D I+ D ESR FG Sbjct: 2 SRIIVKGLPVYLTDDNLREHFTKRLRQKHSHQAVNGSGPDLITDVKILRDR-NGESRRFG 60 Query: 291 FVTMANLKEAERCIKYLDSSVLEGRVITV 377 F+ N ++A ++Y + S + I V Sbjct: 61 FIGYRNEEDAFDAVEYFNGSFINTSKIEV 89
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 43.1 bits (100), Expect = 4e-04 Identities = 24/77 (31%), Positives = 41/77 (53%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 P LFV GLS T+ L++ F + A IV D T S+GFGFV + ++A+ Sbjct: 569 PSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAA 625 Query: 330 IKYLDSSVLEGRVITVE 380 + ++ ++G +T++ Sbjct: 626 KEAMEDGEIDGNKVTLD 642 Score = 29.3 bits (64), Expect = 6.6 Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTR--ESRGFGFVTMANLKEAERCIK 335 L ++ LS T+ L++ F A+ + P + +S+G+ F+ A+ ++A+ + Sbjct: 487 LVLSNLSYSATEETLQEVFEK------ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALN 540 Query: 336 YLDSSVLEGRVITVE 380 + +EGR I +E Sbjct: 541 SCNKREIEGRAIRLE 555
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 43.1 bits (100), Expect = 4e-04 Identities = 21/76 (27%), Positives = 42/76 (55%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LF+ GL+ T+ +L+ + G+V+D ++ D T+ SRGFGF+T +R + Sbjct: 34 LFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRA-QEN 92 Query: 342 DSSVLEGRVITVEKIL 389 +++G+ + ++ L Sbjct: 93 RPHIIDGKTVEAKRAL 108 Score = 33.5 bits (75), Expect = 0.35 Identities = 17/57 (29%), Positives = 27/57 (47%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 LFV GL + L ++F G V+ ++ D T + RGF FV + ++ I Sbjct: 125 LFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAI 181
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 43.1 bits (100), Expect = 4e-04 Identities = 21/77 (27%), Positives = 42/77 (54%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+F+ L + + L FS+ G ++ + +D + +S+G+GFV AN + A++ I+ Sbjct: 125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEK 183 Query: 339 LDSSVLEGRVITVEKIL 389 L+ +L + + V L Sbjct: 184 LNGMLLNDKQVYVGPFL 200 Score = 42.4 bits (98), Expect = 8e-04 Identities = 25/73 (34%), Positives = 37/73 (50%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 +L+V L +TD L F G V+ + D TR S G+G+V N ++A R I+ Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96 Query: 339 LDSSVLEGRVITV 377 L+ L G+ I V Sbjct: 97 LNYIPLYGKPIRV 109 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/74 (31%), Positives = 39/74 (52%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIK 335 +NL+V L ++D L++ FS G V + ++ DP S+G GFV A +EA + Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMS 376 Query: 336 YLDSSVLEGRVITV 377 L ++E + + V Sbjct: 377 QLSGKMIESKPLYV 390 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/62 (33%), Positives = 35/62 (56%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N++V L+ TD DL+ F G++ A +V+ +S+GFGFV N +A R ++ Sbjct: 216 NVYVKNLAESTTDDDLKNAFGEYGKITSA-VVMKDGEGKSKGFGFVNFENADDAARAVES 274 Query: 339 LD 344 L+ Sbjct: 275 LN 276
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 43.1 bits (100), Expect = 4e-04 Identities = 24/77 (31%), Positives = 41/77 (53%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 P LFV GLS T+ L++ F + A IV D T S+GFGFV + ++A+ Sbjct: 570 PSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAA 626 Query: 330 IKYLDSSVLEGRVITVE 380 + ++ ++G +T++ Sbjct: 627 KEAMEDGEIDGNKVTLD 643 Score = 29.3 bits (64), Expect = 6.6 Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTR--ESRGFGFVTMANLKEAERCIK 335 L ++ LS T+ L++ F A+ + P + +S+G+ F+ A+ ++A+ + Sbjct: 488 LVLSNLSYSATEETLQEVFEK------ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALN 541 Query: 336 YLDSSVLEGRVITVE 380 + +EGR I +E Sbjct: 542 SCNKREIEGRAIRLE 556
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 43.1 bits (100), Expect = 4e-04 Identities = 26/74 (35%), Positives = 39/74 (52%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIK 335 N +FV G+S T+ DL + FS G V I++D S+G+GFVT +EA+R Sbjct: 33 NRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTFETEQEAQRLQA 91 Query: 336 YLDSSVLEGRVITV 377 + VL R + + Sbjct: 92 DGECVVLRDRKLNI 105
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 43.1 bits (100), Expect = 4e-04 Identities = 24/77 (31%), Positives = 41/77 (53%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 P LFV GLS T+ L++ F + A IV D T S+GFGFV + ++A+ Sbjct: 571 PSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAA 627 Query: 330 IKYLDSSVLEGRVITVE 380 + ++ ++G +T++ Sbjct: 628 KEAMEDGEIDGNKVTLD 644 Score = 29.3 bits (64), Expect = 6.6 Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTR--ESRGFGFVTMANLKEAERCIK 335 L ++ LS T+ L++ F A+ + P + +S+G+ F+ A+ ++A+ + Sbjct: 489 LVLSNLSYSATEETLQEVFEK------ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALN 542 Query: 336 YLDSSVLEGRVITVE 380 + +EGR I +E Sbjct: 543 SCNKREIEGRAIRLE 557
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 42.7 bits (99), Expect = 6e-04 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIK 335 ++L V GL + T++DL+ +FST GEV+ + D T S+GFGFV E E +K Sbjct: 104 SDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFV---RFTEYETQVK 160 Query: 336 YLDS-SVLEGR 365 + +++GR Sbjct: 161 VMSQRHMIDGR 171
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 42.7 bits (99), Expect = 6e-04 Identities = 23/71 (32%), Positives = 35/71 (49%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 E +F L++R+ RDLE+ FST G+V D ++ D +R SRG +V ++ Sbjct: 149 ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVR 208 Query: 324 RCIKYLDSSVL 356 I VL Sbjct: 209 LAIGLTGQRVL 219 Score = 38.5 bits (88), Expect = 0.011 Identities = 20/72 (27%), Positives = 39/72 (54%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 L+V L +T+ L F G + +++D T S+G+GF+T ++ + A++ ++ L Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Query: 342 DSSVLEGRVITV 377 + L GR + V Sbjct: 312 NGFELAGRPMKV 323
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 42.7 bits (99), Expect = 6e-04 Identities = 21/75 (28%), Positives = 40/75 (53%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G NL++ L + D L K FS G + A ++L+ S+GFGFV ++ +EA + + Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAV 350 Query: 333 KYLDSSVLEGRVITV 377 ++ ++ + + V Sbjct: 351 TEMNGRIVGSKPLYV 365 Score = 42.7 bits (99), Expect = 6e-04 Identities = 18/73 (24%), Positives = 41/73 (56%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+++ + D L++ FS G+ + ++ DP +S+GFGFV+ ++A + ++ Sbjct: 192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEE 250 Query: 339 LDSSVLEGRVITV 377 ++ + G++I V Sbjct: 251 MNGKEISGKIIFV 263
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 42.7 bits (99), Expect = 6e-04 Identities = 26/73 (35%), Positives = 42/73 (57%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LFV GLS T+ L + F EG I A IV D T S+GFGFV ++ ++A+ + + Sbjct: 555 LFVRGLSEDTTEETLRESF--EGS-ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 611 Query: 342 DSSVLEGRVITVE 380 + ++G +T++ Sbjct: 612 EDGEIDGNKVTLD 624 Score = 30.4 bits (67), Expect = 3.0 Identities = 19/79 (24%), Positives = 38/79 (48%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 E LFV L R+T+ +++ F EV +VL+ S+G ++ EAE Sbjct: 367 ERDARTLFVKNLPYRVTEDEMKNVFENALEV---RLVLNK-EGSSKGMAYIEFKTEAEAE 422 Query: 324 RCIKYLDSSVLEGRVITVE 380 + ++ + ++GR + ++ Sbjct: 423 KALEEKQGTEVDGRAMVID 441
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 42.4 bits (98), Expect = 8e-04 Identities = 21/74 (28%), Positives = 40/74 (54%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIK 335 +N++V ++ +T+ +L KHFS G + ++ D +S+GFGFV + +EA +K Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDE-KGKSKGFGFVCFSTPEEAIDAVK 362 Query: 336 YLDSSVLEGRVITV 377 + G+ + V Sbjct: 363 TFHGQMFHGKPLYV 376 Score = 34.7 bits (78), Expect = 0.16 Identities = 22/81 (27%), Positives = 38/81 (46%) Frame = +3 Query: 147 NPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAER 326 N N+FV L +T+ L+ F G ++ + +SRG+GFV A Sbjct: 109 NGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLE-DGKSRGYGFVQFEQEDAAHA 167 Query: 327 CIKYLDSSVLEGRVITVEKIL 389 I+ L+S+++ + I V K + Sbjct: 168 AIQTLNSTIVADKEIYVGKFM 188
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 42.4 bits (98), Expect = 8e-04 Identities = 22/76 (28%), Positives = 39/76 (51%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 PGN +FV G++ L+ +L FS G ++ ++ D E G+GF++ +A C Sbjct: 194 PGN-IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLC 252 Query: 330 IKYLDSSVLEGRVITV 377 IK L+ + G + + Sbjct: 253 IKELNGRTVNGSTLFI 268 Score = 28.9 bits (63), Expect = 8.6 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 20/94 (21%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVL-------------------DPWTRES 278 +NL+V + TD DL + + GE+I ++ D S Sbjct: 540 SNLYVKHIPLSWTDEDLYDFYKSFGEIISVKVITVGGSKNKYRQQSNDSSSDNDLPVGSS 599 Query: 279 RGFGFVTMANLKEAERCIKYLDS-SVLEGRVITV 377 RG+GFV+ + +A + I D V + +V++V Sbjct: 600 RGYGFVSFESPLDAAKAILNTDGYQVSKDQVLSV 633
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 42.4 bits (98), Expect = 8e-04 Identities = 22/75 (29%), Positives = 41/75 (54%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 +FV GL LT+ D+ FS GE+++ ++V D T +S+GF F+ + + + Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 342 DSSVLEGRVITVEKI 386 + ++GR I V+ + Sbjct: 98 NGIKIKGRTIRVDHV 112
>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) Length = 174 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/73 (31%), Positives = 39/73 (53%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LFVTG+ T+ D+ F+ GE+ + + LD T +G+ V KEA+ ++ L Sbjct: 75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134 Query: 342 DSSVLEGRVITVE 380 + L G+ I+V+ Sbjct: 135 NGQDLMGQPISVD 147
>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) (RNA-binding protein Y14) (Binder of OVCA1-1) (BOV-1) Length = 174 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/73 (31%), Positives = 39/73 (53%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LFVTG+ T+ D+ F+ GE+ + + LD T +G+ V KEA+ ++ L Sbjct: 75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134 Query: 342 DSSVLEGRVITVE 380 + L G+ I+V+ Sbjct: 135 NGQDLMGQPISVD 147
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/73 (31%), Positives = 41/73 (56%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LFV GLS T+ L++ F ++A IV D T S+GFGFV + ++A+ + + Sbjct: 504 LFVRGLSEDTTEETLKEAFDGS---VNARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAM 560 Query: 342 DSSVLEGRVITVE 380 + ++G +T++ Sbjct: 561 EDGEIDGNKVTLD 573
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/75 (30%), Positives = 39/75 (52%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G NLFV L + D LE+ F+ G + A ++ +S+GFGFV + +EA + I Sbjct: 320 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTE-NGKSKGFGFVCFSTPEEATKAI 378 Query: 333 KYLDSSVLEGRVITV 377 + ++ G+ + V Sbjct: 379 TEKNQQIVAGKPLYV 393 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/73 (30%), Positives = 40/73 (54%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 NL+V ++S TD ++ F+ G ++ AS+ D + +GFGFV ++A + ++ Sbjct: 219 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDA-DGKLKGFGFVNYEKHEDAVKAVEA 277 Query: 339 LDSSVLEGRVITV 377 L+ S L G + V Sbjct: 278 LNDSELNGEKLYV 290 Score = 37.0 bits (84), Expect = 0.032 Identities = 22/73 (30%), Positives = 37/73 (50%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+F+ L + ++ L FS G+++ + I D +S+GFGFV A+ I Sbjct: 126 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDA 184 Query: 339 LDSSVLEGRVITV 377 L+ +L G+ I V Sbjct: 185 LNGMLLNGQEIYV 197
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/73 (31%), Positives = 38/73 (52%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+FV L + ++ L S G ++ ++V D S+G+GFV + AER IK Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKK 157 Query: 339 LDSSVLEGRVITV 377 ++ +L GR + V Sbjct: 158 MNGMLLNGRKVFV 170 Score = 39.7 bits (91), Expect = 0.005 Identities = 22/81 (27%), Positives = 42/81 (51%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 NL+V L + D L K FS G + A ++++ S+GFGFV ++ +EA + + Sbjct: 295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAV-- 350 Query: 339 LDSSVLEGRVITVEKILLTAA 401 + + GR++ + + + A Sbjct: 351 ---TEMNGRIVATKPLYVALA 368 Score = 35.4 bits (80), Expect = 0.092 Identities = 17/73 (23%), Positives = 37/73 (50%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+++ + D L+ F G + ++ D + +S+GFGFV+ ++A++ + Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 250 Query: 339 LDSSVLEGRVITV 377 ++ L G+ I V Sbjct: 251 MNGKELNGKQIYV 263
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 41.6 bits (96), Expect = 0.001 Identities = 23/83 (27%), Positives = 43/83 (51%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G NL+V L + D L K FS G + A ++++ S+GFGFV ++ +EA + + Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAV 350 Query: 333 KYLDSSVLEGRVITVEKILLTAA 401 + + GR++ + + + A Sbjct: 351 -----TEMNGRIVATKPLYVALA 368 Score = 39.7 bits (91), Expect = 0.005 Identities = 21/73 (28%), Positives = 37/73 (50%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+F+ L + ++ L FS G ++ +V D S+G+GFV + AER I+ Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK 157 Query: 339 LDSSVLEGRVITV 377 ++ +L R + V Sbjct: 158 MNGMLLNDRKVFV 170 Score = 36.2 bits (82), Expect = 0.054 Identities = 17/73 (23%), Positives = 38/73 (52%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+++ + D L++ F G + ++ D + +S+GFGFV+ ++A++ + Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 250 Query: 339 LDSSVLEGRVITV 377 ++ L G+ I V Sbjct: 251 MNGKELNGKQIYV 263
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 41.6 bits (96), Expect = 0.001 Identities = 23/83 (27%), Positives = 43/83 (51%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G NL+V L + D L K FS G + A ++++ S+GFGFV ++ +EA + + Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAV 350 Query: 333 KYLDSSVLEGRVITVEKILLTAA 401 + + GR++ + + + A Sbjct: 351 -----TEMNGRIVATKPLYVALA 368 Score = 39.7 bits (91), Expect = 0.005 Identities = 21/73 (28%), Positives = 37/73 (50%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+F+ L + ++ L FS G ++ +V D S+G+GFV + AER I+ Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK 157 Query: 339 LDSSVLEGRVITV 377 ++ +L R + V Sbjct: 158 MNGMLLNDRKVFV 170 Score = 36.2 bits (82), Expect = 0.054 Identities = 17/73 (23%), Positives = 38/73 (52%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+++ + D L++ F G + ++ D + +S+GFGFV+ ++A++ + Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 250 Query: 339 LDSSVLEGRVITV 377 ++ L G+ I V Sbjct: 251 MNGKELNGKQIYV 263
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 41.6 bits (96), Expect = 0.001 Identities = 23/83 (27%), Positives = 43/83 (51%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G NL+V L + D L K FS G + A ++++ S+GFGFV ++ +EA + + Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAV 350 Query: 333 KYLDSSVLEGRVITVEKILLTAA 401 + + GR++ + + + A Sbjct: 351 -----TEMNGRIVATKPLYVALA 368 Score = 39.7 bits (91), Expect = 0.005 Identities = 21/73 (28%), Positives = 37/73 (50%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+F+ L + ++ L FS G ++ +V D S+G+GFV + AER I+ Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK 157 Query: 339 LDSSVLEGRVITV 377 ++ +L R + V Sbjct: 158 MNGMLLNDRKVFV 170 Score = 35.4 bits (80), Expect = 0.092 Identities = 17/73 (23%), Positives = 37/73 (50%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+++ + D L+ F G + ++ D + +S+GFGFV+ ++A++ + Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 250 Query: 339 LDSSVLEGRVITV 377 ++ L G+ I V Sbjct: 251 MNGKELNGKQIYV 263
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 41.6 bits (96), Expect = 0.001 Identities = 23/83 (27%), Positives = 43/83 (51%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G NL+V L + D L K FS G + A ++++ S+GFGFV ++ +EA + + Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAV 350 Query: 333 KYLDSSVLEGRVITVEKILLTAA 401 + + GR++ + + + A Sbjct: 351 -----TEMNGRIVATKPLYVALA 368 Score = 39.7 bits (91), Expect = 0.005 Identities = 21/73 (28%), Positives = 37/73 (50%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+F+ L + ++ L FS G ++ +V D S+G+GFV + AER I+ Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK 157 Query: 339 LDSSVLEGRVITV 377 ++ +L R + V Sbjct: 158 MNGMLLNDRKVFV 170 Score = 35.4 bits (80), Expect = 0.092 Identities = 17/73 (23%), Positives = 37/73 (50%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+++ + D L+ F G + ++ D + +S+GFGFV+ ++A++ + Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 250 Query: 339 LDSSVLEGRVITV 377 ++ L G+ I V Sbjct: 251 MNGKELNGKQIYV 263
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 41.6 bits (96), Expect = 0.001 Identities = 23/77 (29%), Positives = 38/77 (49%) Frame = +3 Query: 147 NPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAER 326 N ++V GL+ +T+R L F G++ D + D ++ RGF F+ ++A Sbjct: 3 NDKRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAA 62 Query: 327 CIKYLDSSVLEGRVITV 377 I ++ S L GR I V Sbjct: 63 AIDNMNDSELCGRTIRV 79
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 41.2 bits (95), Expect = 0.002 Identities = 23/73 (31%), Positives = 40/73 (54%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 L + LS + ++ DL+ F+ G V++ +I P + RGF FV NL EA + +K Sbjct: 115 LIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKP-DGKMRGFAFVQFKNLLEAGKALKGA 173 Query: 342 DSSVLEGRVITVE 380 + ++GR + V+ Sbjct: 174 NMKEIKGRTVAVD 186 Score = 39.3 bits (90), Expect = 0.006 Identities = 25/75 (33%), Positives = 38/75 (50%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G LFV L LE+ FS G V +V + ++ RGFG+VT + L++ +R + Sbjct: 2 GLTLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRAL 61 Query: 333 KYLDSSVLEGRVITV 377 K + + EG I V Sbjct: 62 K--EITTFEGCKIDV 74 Score = 28.9 bits (63), Expect = 8.6 Identities = 15/60 (25%), Positives = 27/60 (45%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G +F+ LS + L + G++ +VL P T S+G F + A++C+ Sbjct: 323 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCL 382
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/76 (27%), Positives = 39/76 (51%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 P +L+V L +T+ L + FS G ++ + D TR S G+ +V +AER Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68 Query: 330 IKYLDSSVLEGRVITV 377 + ++ V++GR + + Sbjct: 69 LDTMNFDVIKGRPVRI 84 Score = 39.3 bits (90), Expect = 0.006 Identities = 22/83 (26%), Positives = 42/83 (50%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G NL+V L + D L K F G + A ++++ S+GFGFV ++ +EA + + Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAV 350 Query: 333 KYLDSSVLEGRVITVEKILLTAA 401 + + GR++ + + + A Sbjct: 351 -----TEMNGRIVATKPLYVALA 368 Score = 38.9 bits (89), Expect = 0.008 Identities = 21/73 (28%), Positives = 36/73 (49%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+F+ L + ++ L FS G ++ +V D S+G+GFV + AER I Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDK 157 Query: 339 LDSSVLEGRVITV 377 ++ +L R + V Sbjct: 158 MNGMLLNDRKVFV 170 Score = 34.7 bits (78), Expect = 0.16 Identities = 15/73 (20%), Positives = 37/73 (50%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+++ + D L++ F G + ++ D +S+GFGFV+ ++A++ + Sbjct: 192 NVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDE 250 Query: 339 LDSSVLEGRVITV 377 ++ + G+ + V Sbjct: 251 MNGKDMNGKSMFV 263
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/64 (34%), Positives = 34/64 (53%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G NLF+ L D+DL + F G V+ A + +D T S+ FGFV+ N A+ I Sbjct: 400 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI 459 Query: 333 KYLD 344 + ++ Sbjct: 460 QSMN 463
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/64 (34%), Positives = 34/64 (53%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G NLF+ L D+DL + F G V+ A + +D T S+ FGFV+ N A+ I Sbjct: 400 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI 459 Query: 333 KYLD 344 + ++ Sbjct: 460 QSMN 463
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/75 (32%), Positives = 40/75 (53%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G NLFV L + +R L FS G+++ A V S+G+GFV+ + + A+ I Sbjct: 98 GANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAI 157 Query: 333 KYLDSSVLEGRVITV 377 + +++ L + ITV Sbjct: 158 EAMNNQFLMNKPITV 172 Score = 29.3 bits (64), Expect = 6.6 Identities = 19/79 (24%), Positives = 34/79 (43%) Frame = +3 Query: 147 NPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAER 326 N +++ L ++TD L + G V++ I D GFGF + ++ E Sbjct: 8 NQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEY 67 Query: 327 CIKYLDSSVLEGRVITVEK 383 + L+ L G+ I V + Sbjct: 68 ACQILNQVKLFGKPIRVNR 86
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/71 (30%), Positives = 35/71 (49%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 E +F L++R+ RDLE+ FST G+V D ++ D +R S+G +V ++ Sbjct: 149 ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVP 208 Query: 324 RCIKYLDSSVL 356 I VL Sbjct: 209 LAIGLTGQRVL 219 Score = 38.5 bits (88), Expect = 0.011 Identities = 20/72 (27%), Positives = 39/72 (54%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 L+V L +T+ L F G + +++D T S+G+GF+T ++ + A++ ++ L Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Query: 342 DSSVLEGRVITV 377 + L GR + V Sbjct: 312 NGFELAGRPMKV 323
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 41.2 bits (95), Expect = 0.002 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 12/95 (12%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIK 335 N +FV G+ + + DL K FS G V + IV D S+G+GF+T ++A++ ++ Sbjct: 33 NRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQEDAQKILQ 91 Query: 336 ------YLDSSVLEGRVITVEKI------LLTAAG 404 Y D + G I +++ L+ AAG Sbjct: 92 EAEKLNYKDKKLNIGPAIRKQQVGIPRSSLMPAAG 126
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/75 (28%), Positives = 41/75 (54%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 +F+ GL LT+ D+ FS GE+++ ++V D T +S+GF F+ + + + Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97 Query: 342 DSSVLEGRVITVEKI 386 + ++GR I V+ + Sbjct: 98 NGIKIKGRTIRVDHV 112
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 40.8 bits (94), Expect = 0.002 Identities = 24/73 (32%), Positives = 38/73 (52%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 ++FV L ++ + +EKHF G ++ IV D T +GFG+V N +K Sbjct: 288 SVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALK- 346 Query: 339 LDSSVLEGRVITV 377 L++S L GR + V Sbjct: 347 LNNSELMGRKLRV 359
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 40.8 bits (94), Expect = 0.002 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEG-EVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 + +FV L +T+ + KHFS EG +V D ++ +R GFV + ++A R + Sbjct: 5 SRIFVKNLPPTITEAEFRKHFSAEGRQVTDVKLI------PARHIGFVGYKSAEDAARAV 58 Query: 333 KYLDSSVLEGRVITVE 380 KY + S + I+V+ Sbjct: 59 KYFNRSFIRMSRISVD 74 Score = 35.4 bits (80), Expect = 0.092 Identities = 21/78 (26%), Positives = 37/78 (47%) Frame = +3 Query: 147 NPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAER 326 N G L V L +T +++ FS G+++ A + + + SRGF F + KEA Sbjct: 701 NQGTKLVVKNLPFEVTKKEVRTLFSAYGKLV-ALRIPKKFNQSSRGFAFAEFSTAKEALN 759 Query: 327 CIKYLDSSVLEGRVITVE 380 L + + GR + ++ Sbjct: 760 AFNSLKDTHILGRRLVID 777
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 40.8 bits (94), Expect = 0.002 Identities = 19/72 (26%), Positives = 38/72 (52%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LF+ + T+ D ++ FS GE+ + + +D T +S+GF +V + + A L Sbjct: 303 LFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIEL 362 Query: 342 DSSVLEGRVITV 377 D + +GR++ + Sbjct: 363 DKQIFQGRLLHI 374
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 40.8 bits (94), Expect = 0.002 Identities = 22/83 (26%), Positives = 43/83 (51%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G NL+V L + D L K F+ G + A ++++ S+GFGFV ++ +EA + + Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGG--RSKGFGFVCFSSPEEATKAV 350 Query: 333 KYLDSSVLEGRVITVEKILLTAA 401 + + GR++ + + + A Sbjct: 351 -----TEMNGRIVATKPLYVALA 368 Score = 38.9 bits (89), Expect = 0.008 Identities = 21/73 (28%), Positives = 36/73 (49%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+F+ L + ++ L FS G ++ +V D S+G+GFV + AER I Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDK 157 Query: 339 LDSSVLEGRVITV 377 ++ +L R + V Sbjct: 158 MNGMLLNDRKVFV 170 Score = 37.4 bits (85), Expect = 0.024 Identities = 18/73 (24%), Positives = 37/73 (50%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+++ + D L++ F G + ++ D + SRGFGFV+ ++A++ + Sbjct: 192 NVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGK-SRGFGFVSFERHEDAQKAVDD 250 Query: 339 LDSSVLEGRVITV 377 ++ L G+ I V Sbjct: 251 MNGKDLNGKAIFV 263
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 40.4 bits (93), Expect = 0.003 Identities = 21/60 (35%), Positives = 34/60 (56%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIK 335 N +FV G+ + + DL K FS G V + IV D S+G+GFVT ++A++ ++ Sbjct: 33 NRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQ 91
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 40.4 bits (93), Expect = 0.003 Identities = 21/60 (35%), Positives = 34/60 (56%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIK 335 N +FV G+ + + DL K FS G V + IV D S+G+GFVT ++A++ ++ Sbjct: 33 NRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQ 91
>PPIL4_MOUSE (Q9CXG3) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 40.4 bits (93), Expect = 0.003 Identities = 24/77 (31%), Positives = 39/77 (50%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 P N LFV L+ TD DLE FS G + ++ D T ES + F+ ++ E+ Sbjct: 238 PENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKA 297 Query: 330 IKYLDSSVLEGRVITVE 380 +D+ +++ R I V+ Sbjct: 298 FFKMDNVLIDDRRIHVD 314
>PPIL4_HUMAN (Q8WUA2) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 40.4 bits (93), Expect = 0.003 Identities = 24/77 (31%), Positives = 39/77 (50%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 P N LFV L+ TD DLE FS G + ++ D T ES + F+ ++ E+ Sbjct: 238 PENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKA 297 Query: 330 IKYLDSSVLEGRVITVE 380 +D+ +++ R I V+ Sbjct: 298 FFKMDNVLIDDRRIHVD 314
>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1| Length = 476 Score = 40.4 bits (93), Expect = 0.003 Identities = 22/71 (30%), Positives = 38/71 (53%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 E P + +F+ +S ++ L +HFS G++ D +V D T+ES+G FV A +A Sbjct: 22 EPPNSRIFLV-ISKYTSESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQAC 80 Query: 324 RCIKYLDSSVL 356 R ++ + L Sbjct: 81 RAMEEMHGQCL 91 Score = 33.5 bits (75), Expect = 0.35 Identities = 16/53 (30%), Positives = 28/53 (52%) Frame = +3 Query: 192 TDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYLDSS 350 T+ DL + F G++ S++ + T ES+G G+V +A + I+ D S Sbjct: 132 TEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRS 184
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 40.4 bits (93), Expect = 0.003 Identities = 21/72 (29%), Positives = 36/72 (50%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LFV LS + +LE FS G++ + + D S+GF +V A+ A + L Sbjct: 297 LFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRNL 356 Query: 342 DSSVLEGRVITV 377 D + +GR++ + Sbjct: 357 DGKIFQGRLLHI 368 Score = 34.7 bits (78), Expect = 0.16 Identities = 19/73 (26%), Positives = 36/73 (49%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 + + L + T +D+ F G++ + + R +RGFGF + +EAE + L Sbjct: 699 IIIKNLPFQATKKDVRSLFGAYGQLRSVRVP-KKFDRSARGFGFADFVSAREAENAMDAL 757 Query: 342 DSSVLEGRVITVE 380 ++ L GR + +E Sbjct: 758 KNTHLLGRRLVLE 770
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 40.0 bits (92), Expect = 0.004 Identities = 18/65 (27%), Positives = 34/65 (52%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G +FV + L + +L F G + D +++DP + ++RG+ F+T + A+ + Sbjct: 164 GTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAV 223 Query: 333 KYLDS 347 K DS Sbjct: 224 KLCDS 228
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 40.0 bits (92), Expect = 0.004 Identities = 21/68 (30%), Positives = 38/68 (55%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G+NL++ L + D L++ FS G V ++++ SRGFGFV +N +EA + Sbjct: 327 GSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGL-SRGFGFVAYSNPEEALLAM 385 Query: 333 KYLDSSVL 356 K ++ ++ Sbjct: 386 KEMNGKMI 393 Score = 36.2 bits (82), Expect = 0.054 Identities = 19/73 (26%), Positives = 39/73 (53%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+F+ L + + ++ L + FS+ G ++ + +D R S+G+GFV + A+ I Sbjct: 133 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGR-SKGYGFVQFEKEETAQAAIDK 191 Query: 339 LDSSVLEGRVITV 377 L+ +L + + V Sbjct: 192 LNGMLLNDKQVFV 204
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 39.7 bits (91), Expect = 0.005 Identities = 22/76 (28%), Positives = 40/76 (52%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 GN +FV + ++++ + + F+ G V +VLDP T +G+GF + + + Sbjct: 6 GNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAV 65 Query: 333 KYLDSSVLEGRVITVE 380 + L++S L R I VE Sbjct: 66 RKLNNSELGPRKIRVE 81
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 39.7 bits (91), Expect = 0.005 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDA-SIVLDPWTRESRGFGFVTMANLKEAERC 329 G N+F+ L + ++ L FS G ++ I+ DP T S+G+ F+ A+ ++ Sbjct: 99 GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA 158 Query: 330 IKYLDSSVLEGRVITV 377 I+ ++ L R ITV Sbjct: 159 IEAMNGQYLCNRPITV 174
>RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41| Length = 356 Score = 39.7 bits (91), Expect = 0.005 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Frame = +3 Query: 150 PGNNLFVTGLSSRLT-DRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAER 326 P LFV ++ T RDLE+HF G++++ I R F F+ ++A R Sbjct: 94 PSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRI--------RRNFAFIQYEAQEDATR 145 Query: 327 CIKYLDSSVLEGRVITVE 380 + +SS L +VI+VE Sbjct: 146 ALDATNSSKLMDKVISVE 163
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 39.3 bits (90), Expect = 0.006 Identities = 20/63 (31%), Positives = 31/63 (49%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 E +F L++R+ RDLE FS G+V D I+ D +R S+G +V ++ Sbjct: 162 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP 221 Query: 324 RCI 332 I Sbjct: 222 LAI 224 Score = 37.4 bits (85), Expect = 0.024 Identities = 21/72 (29%), Positives = 39/72 (54%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 L+V L +T+ L F G++ + ++ D T S+G+GF+T ++ + A R ++ L Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324 Query: 342 DSSVLEGRVITV 377 + L GR + V Sbjct: 325 NGFELAGRPMRV 336
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 38.9 bits (89), Expect = 0.008 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDA-SIVLDPWTRESRGFGFVTMANLKEAER 326 P +LFV LS T+ DL F T + + ++ DP T SR FGFV + E R Sbjct: 190 PEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRR 249 Query: 327 CIKYLDSSVLEGRVITV 377 + + +GR + V Sbjct: 250 ALIEMSGKWFQGRALRV 266
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 38.9 bits (89), Expect = 0.008 Identities = 20/67 (29%), Positives = 36/67 (53%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 + P + LFV L TD DL++HF G++ ++ T + +GFGFV + + + Sbjct: 224 KEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFV---DFPDID 280 Query: 324 RCIKYLD 344 C+K ++ Sbjct: 281 TCMKAME 287
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 38.9 bits (89), Expect = 0.008 Identities = 20/73 (27%), Positives = 34/73 (46%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 NLFV L+ + D L F + ++ D T SRG+GFV+ + +A+ + Sbjct: 162 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 221 Query: 339 LDSSVLEGRVITV 377 + L GR + + Sbjct: 222 MQGQDLNGRPLRI 234
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 38.9 bits (89), Expect = 0.008 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G +FV + L + +L F G + D +++DP T +RG+ FVT + A+ + Sbjct: 71 GTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 130 Query: 333 K-YLDSSVLEGRVITV 377 K Y + + G+ I V Sbjct: 131 KLYNNHEIRSGKHIGV 146
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 38.9 bits (89), Expect = 0.008 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G +FV + L + +L F G + D +++DP T +RG+ FVT + A+ + Sbjct: 161 GTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 220 Query: 333 K-YLDSSVLEGRVITV 377 K Y + + G+ I V Sbjct: 221 KLYNNHEIRSGKHIGV 236
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 38.9 bits (89), Expect = 0.008 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G +FV + L + +L F G + D +++DP T +RG+ FVT + A+ + Sbjct: 161 GTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 220 Query: 333 K-YLDSSVLEGRVITV 377 K Y + + G+ I V Sbjct: 221 KLYNNHEIRSGKHIGV 236
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 38.9 bits (89), Expect = 0.008 Identities = 23/79 (29%), Positives = 39/79 (49%) Frame = +3 Query: 147 NPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAER 326 N ++V GL ++++ L + G V+ ++ D T +GFGFV ++A+ Sbjct: 10 NQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADY 69 Query: 327 CIKYLDSSVLEGRVITVEK 383 IK L+ L G+ I V K Sbjct: 70 AIKILNMIKLYGKPIKVNK 88 Score = 36.2 bits (82), Expect = 0.054 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDA-SIVLDPWTRESRGFGFVTMANLKEAERC 329 G N+FV L + ++ L FS G ++ I+ D + S+GF F+ A+ + ++ Sbjct: 99 GANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTA 158 Query: 330 IKYLDSSVLEGRVITV 377 ++ ++ L R ITV Sbjct: 159 LEAMNGQFLCNRAITV 174
>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)| (PPIase cyp6) (Rotamase cyp8) Length = 432 Score = 38.9 bits (89), Expect = 0.008 Identities = 22/77 (28%), Positives = 38/77 (49%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 P N LFV L+ D DLE FS G++I ++ D T +S + F+ N + E+ Sbjct: 242 PENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKA 301 Query: 330 IKYLDSSVLEGRVITVE 380 + + +++ I V+ Sbjct: 302 YFKMQNVLIDDSRIHVD 318
>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 459 Score = 38.5 bits (88), Expect = 0.011 Identities = 21/77 (27%), Positives = 37/77 (48%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 P N LFV L+ D DL+ FS G ++ ++ D T +S + F+ N K+ E+ Sbjct: 246 PENVLFVCKLNPVTQDEDLQLIFSRFGPILSCEVIRDKRTGDSLQYAFIEFENQKDCEQA 305 Query: 330 IKYLDSSVLEGRVITVE 380 + +++ I V+ Sbjct: 306 YFKMQGVLIDDHRIHVD 322
>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 38.5 bits (88), Expect = 0.011 Identities = 21/77 (27%), Positives = 38/77 (49%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 P N LFV L+ D DLE FS G+++ ++ D T +S + F+ + K+ E+ Sbjct: 246 PENVLFVCKLNPVTQDEDLELIFSRFGKILSCEVIRDKRTGDSLQYAFIEFESQKDCEQA 305 Query: 330 IKYLDSSVLEGRVITVE 380 + +++ I V+ Sbjct: 306 YFKMQGVLIDDHRIHVD 322
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 38.1 bits (87), Expect = 0.014 Identities = 22/72 (30%), Positives = 36/72 (50%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 L++ GLS + L+ FS+ V +A ++ + T SRG+GFV + A I + Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92 Query: 342 DSSVLEGRVITV 377 + L G I+V Sbjct: 93 NGQELNGFNISV 104
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 38.1 bits (87), Expect = 0.014 Identities = 21/74 (28%), Positives = 36/74 (48%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIK 335 + LFV L ++ DLE FS G++ + + D + S+GF +V A + K Sbjct: 301 SRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAYK 360 Query: 336 YLDSSVLEGRVITV 377 LD +GR++ + Sbjct: 361 ELDGKHFQGRLMHI 374 Score = 34.7 bits (78), Expect = 0.16 Identities = 19/73 (26%), Positives = 36/73 (49%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 + + L + T +D+ F G++ + + R +RGFGF + +EAE + L Sbjct: 704 IIIKNLPFQATKKDVRSLFGAYGQLRSVRVP-KKFDRSARGFGFADFVSAREAENAMDAL 762 Query: 342 DSSVLEGRVITVE 380 ++ L GR + +E Sbjct: 763 KNTHLLGRRLVLE 775
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 38.1 bits (87), Expect = 0.014 Identities = 23/78 (29%), Positives = 39/78 (50%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 E +++V + T +LE HF G V +I+ D ++ +GF ++ ++ KE+ Sbjct: 163 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSD-KESV 221 Query: 324 RCIKYLDSSVLEGRVITV 377 R LD S+ GR I V Sbjct: 222 RTSLALDESLFRGRQIKV 239
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 38.1 bits (87), Expect = 0.014 Identities = 23/78 (29%), Positives = 39/78 (50%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 E +++V + T +LE HF G V +I+ D ++ +GF ++ ++ KE+ Sbjct: 167 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSD-KESV 225 Query: 324 RCIKYLDSSVLEGRVITV 377 R LD S+ GR I V Sbjct: 226 RTSLALDESLFRGRQIKV 243
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 38.1 bits (87), Expect = 0.014 Identities = 23/78 (29%), Positives = 39/78 (50%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 E +++V + T +LE HF G V +I+ D ++ +GF ++ ++ KE+ Sbjct: 167 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSD-KESV 225 Query: 324 RCIKYLDSSVLEGRVITV 377 R LD S+ GR I V Sbjct: 226 RTSLALDESLFRGRQIKV 243
>RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40| Length = 350 Score = 38.1 bits (87), Expect = 0.014 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Frame = +3 Query: 150 PGNNLFVTGLSSRLT-DRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAER 326 P LFV + T RDLEKHF G++++ I R F F+ ++A R Sbjct: 95 PSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRI--------RRNFAFIQYEAQEDATR 146 Query: 327 CIKYLDSSVLEGRVITVE 380 + ++S L +VI+VE Sbjct: 147 ALDASNNSKLMDKVISVE 164
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 37.7 bits (86), Expect = 0.019 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Frame = +3 Query: 147 NPGNNLFVTGLSSRLTDRDLEKHF-STEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 +P ++FV L D DL F S A I++DP T SR +GFV ++ KE + Sbjct: 179 DPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQ 238 Query: 324 RCIKYLDSSVLEGRVITV 377 + ++ + +GR + + Sbjct: 239 HALMHMQGYLCQGRPLRI 256
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 37.7 bits (86), Expect = 0.019 Identities = 24/75 (32%), Positives = 40/75 (53%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 GN +FV L LT + L++ FS G V+ A I ++ +S+G G V + + AE+ Sbjct: 513 GNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME--NGKSKGCGTVRFESAESAEKAC 570 Query: 333 KYLDSSVLEGRVITV 377 + ++ + GR I V Sbjct: 571 RIMNGIKISGREIDV 585
>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 37.7 bits (86), Expect = 0.019 Identities = 21/77 (27%), Positives = 36/77 (46%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 P N LFV L+ D DL FS G ++ ++ D T +S + F+ N K+ E+ Sbjct: 246 PENVLFVCKLNPVTQDEDLHLIFSRFGTILSCEVIRDKRTGDSLQYAFIEFENQKDCEQA 305 Query: 330 IKYLDSSVLEGRVITVE 380 + +++ I V+ Sbjct: 306 YFKMQGVLIDDHRIHVD 322
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 37.4 bits (85), Expect = 0.024 Identities = 24/75 (32%), Positives = 36/75 (48%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 +++V LS +++ DL F+ G V + D T RGFGFV + E I+ Sbjct: 2 SIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEA 61 Query: 339 LDSSVLEGRVITVEK 383 LD + GR + V K Sbjct: 62 LDGAEWMGRDLKVNK 76
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 37.4 bits (85), Expect = 0.024 Identities = 21/63 (33%), Positives = 31/63 (49%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 E +FV+ L++RLT R+L F G V DA IV D + S+G +V + + Sbjct: 236 ERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQ 295 Query: 324 RCI 332 I Sbjct: 296 AAI 298 Score = 34.3 bits (77), Expect = 0.20 Identities = 22/78 (28%), Positives = 38/78 (48%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 E P + L V+ + LTD D++ F G++ + D R S+GFG++ N A Sbjct: 336 EIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNR-SKGFGYIQYRNPISAR 394 Query: 324 RCIKYLDSSVLEGRVITV 377 ++ ++ L GR + V Sbjct: 395 NALEKMNGFDLAGRNMRV 412
>NOP12_ASHGO (Q75BJ7) Nucleolar protein 12| Length = 426 Score = 37.4 bits (85), Expect = 0.024 Identities = 20/69 (28%), Positives = 33/69 (47%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 ++FV L ++ L KHF + G + IV DP T +GF +V A+L + + Sbjct: 260 SVFVGNLDFEESEESLWKHFMSCGPIEYVRIVRDPKTNVGKGFAYVQFADLVSVNKALLL 319 Query: 339 LDSSVLEGR 365 D + G+ Sbjct: 320 NDKKMAVGK 328
>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 551 Score = 37.4 bits (85), Expect = 0.024 Identities = 22/77 (28%), Positives = 38/77 (49%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 P N LFV L+ DLE FS G+++ ++ D T +S + F+ +AER Sbjct: 260 PENILFVCKLNPVTRSDDLELIFSRFGKILSCEVIKDKKTGDSLQYAFIEFDKKDDAERA 319 Query: 330 IKYLDSSVLEGRVITVE 380 + + +++ R I V+ Sbjct: 320 YFKMQNVLVDDRRIWVD 336
>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 37.4 bits (85), Expect = 0.024 Identities = 21/71 (29%), Positives = 37/71 (52%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 E P + +F+ +S ++ L + FS G++ D +V D T+ES+G FV A +A Sbjct: 22 EPPNSRIFLV-ISKHTSELVLRERFSPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQAC 80 Query: 324 RCIKYLDSSVL 356 R ++ + L Sbjct: 81 RAMEEMHGQCL 91 Score = 33.9 bits (76), Expect = 0.27 Identities = 17/53 (32%), Positives = 28/53 (52%) Frame = +3 Query: 192 TDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYLDSS 350 T+ DL + F G++ SI+ + T ES+G G+V +A + I+ D S Sbjct: 132 TEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRS 184
>PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 504 Score = 37.4 bits (85), Expect = 0.024 Identities = 22/77 (28%), Positives = 39/77 (50%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 P N LFV L+ D DLE FS G+++ +V D + +S + F+ + AE+ Sbjct: 244 PENILFVCKLNPVTQDEDLELIFSRFGKILSCEVVRDKKSGDSLQYAFIEFDEREAAEQA 303 Query: 330 IKYLDSSVLEGRVITVE 380 + + +++ R I V+ Sbjct: 304 YFKMQNVLVDDRRIWVD 320
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 37.4 bits (85), Expect = 0.024 Identities = 22/76 (28%), Positives = 36/76 (47%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIK 335 N++FV L+ T DL++ F T GEV++A I+ RG G V + + I Sbjct: 122 NSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITS--KGHHRGMGTVEFTKNESVQDAIS 179 Query: 336 YLDSSVLEGRVITVEK 383 D ++ R + V + Sbjct: 180 KFDGALFMDRKLMVRQ 195 Score = 34.3 bits (77), Expect = 0.20 Identities = 24/77 (31%), Positives = 36/77 (46%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G +F+ L + + L+ F G V+ A + LD + SRGFG V E R I Sbjct: 218 GFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELD-FNGFSRGFGSVIYPTEDEMIRAI 276 Query: 333 KYLDSSVLEGRVITVEK 383 + +EGRV+ V + Sbjct: 277 DTFNGMEVEGRVLEVRE 293
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 37.4 bits (85), Expect = 0.024 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 12/89 (13%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEV------------IDASIVLDPWTRESRGFGF 293 P N+++V+GLS LT+ L++ F I I L R RGFGF Sbjct: 203 PPNSIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGF 262 Query: 294 VTMANLKEAERCIKYLDSSVLEGRVITVE 380 V+ AN ++ R I+ ++ + + V+ Sbjct: 263 VSFANAEDQSRAIEEMNGKQVGDLTLVVK 291
>SET1_SCHPO (Q9Y7R4) Histone-lysine N-methyltransferase, H3 lysine-4 specific| (EC 2.1.1.43) (Set1 complex component set1) (Set1C component set1) (COMPASS component set1) (SET domain-containing protein 1) (Spset1) Length = 920 Score = 37.0 bits (84), Expect = 0.032 Identities = 17/45 (37%), Positives = 25/45 (55%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRG 284 P +FV+ +S +T L HF + GEV D + L+P+T S G Sbjct: 92 PPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLG 136
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 37.0 bits (84), Expect = 0.032 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 3/78 (3%) Frame = +3 Query: 153 GNN--LFVTGLSSRLTDRDL-EKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 GNN +FV L+ +T+ L E + A IV D T S+G+GFV N E + Sbjct: 160 GNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQ 219 Query: 324 RCIKYLDSSVLEGRVITV 377 + + L GR I V Sbjct: 220 LALSEMQGVFLNGRAIKV 237
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 36.6 bits (83), Expect = 0.041 Identities = 24/75 (32%), Positives = 40/75 (53%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 GN +FV L LT + L++ FS G V+ A I ++ +S+G G V + + AE+ Sbjct: 522 GNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME--NGKSKGCGTVRFDSPESAEKAC 579 Query: 333 KYLDSSVLEGRVITV 377 + ++ + GR I V Sbjct: 580 RIMNGIKISGREIDV 594
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 36.6 bits (83), Expect = 0.041 Identities = 24/75 (32%), Positives = 35/75 (46%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G NL+V L + D L FS G + A ++ D R S+GFGFV EA + Sbjct: 286 GVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGR-SKGFGFVCFNAASEATCAV 344 Query: 333 KYLDSSVLEGRVITV 377 L+ V+ + + V Sbjct: 345 TELNGRVVGSKPLYV 359 Score = 33.9 bits (76), Expect = 0.27 Identities = 18/77 (23%), Positives = 36/77 (46%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+F+ L + ++ + FS G ++ + D S+G+GFV + A I Sbjct: 91 NVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDE-KGNSKGYGFVHFETEEAANTSIDK 149 Query: 339 LDSSVLEGRVITVEKIL 389 ++ +L G+ + V K + Sbjct: 150 VNGMLLNGKKVYVGKFI 166 Score = 31.2 bits (69), Expect = 1.7 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N++V + D L++ F G++ V+ +S+GFGFV + AE ++ Sbjct: 184 NVYVKNFTEDFDDEKLKEFFEPYGKITSYK-VMSKEDGKSKGFGFVAFETTEAAEAAVQA 242 Query: 339 LDSSVL-EGRVITVEK 383 L+ + EG+ + V + Sbjct: 243 LNGKDMGEGKSLYVAR 258
>DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 36.6 bits (83), Expect = 0.041 Identities = 21/71 (29%), Positives = 36/71 (50%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 E P + +F+ +S + L + FS G++ D +V D T+ES+G FV A +A Sbjct: 22 EPPNSRIFLV-ISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQAC 80 Query: 324 RCIKYLDSSVL 356 R ++ + L Sbjct: 81 RAMEEMHGQCL 91 Score = 33.9 bits (76), Expect = 0.27 Identities = 17/53 (32%), Positives = 28/53 (52%) Frame = +3 Query: 192 TDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYLDSS 350 T+ DL + F G++ SI+ + T ES+G G+V +A + I+ D S Sbjct: 132 TEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRS 184
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 35.8 bits (81), Expect = 0.070 Identities = 19/73 (26%), Positives = 37/73 (50%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+FV + + D L++ F G ++ D + +S+GFGFV + A++ + Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLD 258 Query: 339 LDSSVLEGRVITV 377 L ++G+V+ V Sbjct: 259 LHGKSIDGKVLYV 271
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 35.8 bits (81), Expect = 0.070 Identities = 19/73 (26%), Positives = 37/73 (50%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+FV + + D L++ F G ++ D + +S+GFGFV + A++ + Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLD 258 Query: 339 LDSSVLEGRVITV 377 L ++G+V+ V Sbjct: 259 LHGKSIDGKVLYV 271
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 35.8 bits (81), Expect = 0.070 Identities = 19/73 (26%), Positives = 37/73 (50%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+FV + + D L++ F G ++ D + +S+GFGFV + A++ + Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLD 258 Query: 339 LDSSVLEGRVITV 377 L ++G+V+ V Sbjct: 259 LHGKSIDGKVLYV 271
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 35.8 bits (81), Expect = 0.070 Identities = 19/73 (26%), Positives = 37/73 (50%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+FV + + D L++ F G ++ D + +S+GFGFV + A++ + Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLD 258 Query: 339 LDSSVLEGRVITV 377 L ++G+V+ V Sbjct: 259 LHGKSIDGKVLYV 271
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 35.8 bits (81), Expect = 0.070 Identities = 19/73 (26%), Positives = 37/73 (50%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+FV + + D L++ F G ++ D + +S+GFGFV + A++ + Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLD 258 Query: 339 LDSSVLEGRVITV 377 L ++G+V+ V Sbjct: 259 LHGKSIDGKVLYV 271
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 35.8 bits (81), Expect = 0.070 Identities = 19/73 (26%), Positives = 37/73 (50%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKY 338 N+FV + + D L++ F G ++ D + +S+GFGFV + A++ + Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLD 258 Query: 339 LDSSVLEGRVITV 377 L ++G+V+ V Sbjct: 259 LHGKSIDGKVLYV 271
>TRA2_DROVI (O02008) Transformer-2 sex-determining protein| Length = 272 Score = 35.8 bits (81), Expect = 0.070 Identities = 21/71 (29%), Positives = 35/71 (49%) Frame = +3 Query: 168 VTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYLDS 347 V GL++ T + + + F+ G + +V+D T SRGF F+ NL +A Sbjct: 109 VFGLNTNTTQQKVRELFNKFGPIERIQMVIDAHTHRSRGFCFIYFENLGDARVAKDACTG 168 Query: 348 SVLEGRVITVE 380 ++GR I V+ Sbjct: 169 MEVDGRRIRVD 179
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 35.8 bits (81), Expect = 0.070 Identities = 21/73 (28%), Positives = 34/73 (46%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LFV + +TD L FS + A +V D + SRGFGFV+ A + + + Sbjct: 28 LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDT-NKRSRGFGFVSFAVEDDTKEALAKA 86 Query: 342 DSSVLEGRVITVE 380 + G ++ V+ Sbjct: 87 RKTKFNGHILRVD 99 Score = 32.0 bits (71), Expect = 1.0 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 15/93 (16%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIK- 335 ++FV + T+ L HFS G V A V+D T ++G FV + CIK Sbjct: 291 SVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAFKDQYTYNECIKN 350 Query: 336 --------------YLDSSVLEGRVITVEKILL 392 + V EGRV+++ L+ Sbjct: 351 APAAGSTSLLIGDDVMPEYVYEGRVLSITPTLV 383 Score = 29.6 bits (65), Expect = 5.0 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%) Frame = +3 Query: 204 LEKHFSTEGEVIDASIVLDPWTRESR--GFGFVTMANLKEAERCIKYLDSSVLEGRVITV 377 L+K F G V++A+I P R+ + GF FVTM + ++ ++GR + V Sbjct: 164 LKKIFGRYGTVVEATI---PRKRDGKLCGFAFVTMKKISNCRIALENTKDLKIDGRKVAV 220 Query: 378 E 380 + Sbjct: 221 D 221
>RSP31_ARATH (P92964) Arginine/serine-rich splicing factor RSP31| Length = 264 Score = 35.4 bits (80), Expect = 0.092 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Frame = +3 Query: 150 PGNNLFVTGLSS-RLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAER 326 P LFV R + D+EKHF G+V + I R F FV ++A + Sbjct: 91 PTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRI--------RRNFSFVQFETQEDATK 142 Query: 327 CIKYLDSSVLEGRVITVEKIL 389 ++ S + RV++VE L Sbjct: 143 ALEATQRSKILDRVVSVEYAL 163
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 35.4 bits (80), Expect = 0.092 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 10/84 (11%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFST----------EGEVIDASIVLDPWTRESRGFGFVTMA 305 + L V L L + L+KHFST ++ D +V ++R FGFV Sbjct: 2 SRLIVKNLPPYLDEAGLKKHFSTVKDPKSAGFAPSDITDVKVVRAR-DGKTRRFGFVGFR 60 Query: 306 NLKEAERCIKYLDSSVLEGRVITV 377 + + AE +KY D+S + I+V Sbjct: 61 SDETAEAAVKYFDTSFINSTKISV 84 Score = 34.7 bits (78), Expect = 0.16 Identities = 20/75 (26%), Positives = 35/75 (46%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIK 335 + + + L T +D++K F G + + + ESRGF F + KEAE + Sbjct: 703 SKILIKNLPFEATKKDVQKLFGAFGSLKTVRVP-KKFNSESRGFAFAEYVSAKEAEHAMS 761 Query: 336 YLDSSVLEGRVITVE 380 L + L GR + ++ Sbjct: 762 ALQGTHLLGRRLVLQ 776 Score = 33.9 bits (76), Expect = 0.27 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 5/79 (6%) Frame = +3 Query: 159 NLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRE-----SRGFGFVTMANLKEAE 323 ++FV L+ + T R L F + A + + P ++ S GFGFV ++ + AE Sbjct: 606 SVFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSKEAAE 665 Query: 324 RCIKYLDSSVLEGRVITVE 380 K +D VL+G + ++ Sbjct: 666 IAQKAMDGHVLDGHKLQLK 684 Score = 31.2 bits (69), Expect = 1.7 Identities = 16/72 (22%), Positives = 34/72 (47%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LF+ L + D + FS GE+ + + ++ T + +GF V + + A + Sbjct: 303 LFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAYEAQ 362 Query: 342 DSSVLEGRVITV 377 D + +GR++ + Sbjct: 363 DGKIFQGRLLHI 374
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 35.4 bits (80), Expect = 0.092 Identities = 21/63 (33%), Positives = 37/63 (58%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LFV L+ + T++++E+ F G V D ++ D + R+SRG GFV ++ + A I L Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEY-RQSRGCGFVKYSSKETAMAAIDGL 271 Query: 342 DSS 350 + + Sbjct: 272 NGT 274
>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 272 Score = 35.4 bits (80), Expect = 0.092 Identities = 20/76 (26%), Positives = 36/76 (47%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G +F+ L+ ++D+E+ F G + D + RGFGFV + ++A+ + Sbjct: 3 GCRVFIGRLNPAAREKDVERFFKGYGRIRDIDL--------KRGFGFVEFEDPRDADDAV 54 Query: 333 KYLDSSVLEGRVITVE 380 LD L +T+E Sbjct: 55 YELDGKELCSERVTIE 70
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 35.4 bits (80), Expect = 0.092 Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Frame = +3 Query: 177 LSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRE-SRGFGFVTMANLKEAERCIKYLDSSV 353 L+ +T + + FST G++ + +D + S+G+ +V +EAE+ +K++D Sbjct: 145 LTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKHMDGGQ 204 Query: 354 LEGRVITVEKIL 389 ++G+ IT +L Sbjct: 205 IDGQEITASAVL 216
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 35.4 bits (80), Expect = 0.092 Identities = 24/75 (32%), Positives = 33/75 (44%) Frame = +3 Query: 156 NNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIK 335 N VT L + + +L F G VI I D T +GF FVT + +A R I Sbjct: 176 NTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIA 235 Query: 336 YLDSSVLEGRVITVE 380 L+ + V+ VE Sbjct: 236 ELNDIRMYHMVLKVE 250
>HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP| core protein C) (Fragment) Length = 158 Score = 35.4 bits (80), Expect = 0.092 Identities = 21/67 (31%), Positives = 33/67 (49%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 + P +FV GLS + + ++F GEV + +D T + RGF F+T KE E Sbjct: 30 KEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT---FKEEE 86 Query: 324 RCIKYLD 344 K ++ Sbjct: 87 PVKKIME 93
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 35.4 bits (80), Expect = 0.092 Identities = 18/72 (25%), Positives = 35/72 (48%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 LF+ L+ + DL+ F G++ + +D T +GF ++ + +A R L Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384 Query: 342 DSSVLEGRVITV 377 D+ +GR++ V Sbjct: 385 DAKPFQGRLLHV 396 Score = 32.0 bits (71), Expect = 1.0 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%) Frame = +3 Query: 225 EGEVIDASIVLDPWTRE--SRGFGFVTMANLKEAERCIKYLDSSVLEGRVITVEKIL 389 + E+ D S+ T+E SR F F+ N ++A++ I+YL+ S +E I V + L Sbjct: 29 DAEITDVSVAK---TKEGVSRRFAFIGFKNEEDADKAIRYLNKSYVETSRIEVHRAL 82 Score = 30.0 bits (66), Expect = 3.9 Identities = 16/76 (21%), Positives = 34/76 (44%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G + + L T +D++ G++ + + R +RGF F +EA + Sbjct: 720 GTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVP-KKFDRSARGFAFAEFVTAREAANAM 778 Query: 333 KYLDSSVLEGRVITVE 380 + L ++ L GR + ++ Sbjct: 779 RALKNTHLLGRHLVLQ 794
>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Insulin-induced growth response protein CL-4) (Delayed-early protein HRS) Length = 269 Score = 35.4 bits (80), Expect = 0.092 Identities = 20/76 (26%), Positives = 36/76 (47%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G +F+ L+ ++D+E+ F G + D + RGFGFV + ++A+ + Sbjct: 3 GCRVFIGRLNPAAREKDVERFFKGYGRIRDIDL--------KRGFGFVEFEDPRDADDAV 54 Query: 333 KYLDSSVLEGRVITVE 380 LD L +T+E Sbjct: 55 YELDGKELCSERVTIE 70
>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 270 Score = 35.4 bits (80), Expect = 0.092 Identities = 20/76 (26%), Positives = 36/76 (47%) Frame = +3 Query: 153 GNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCI 332 G +F+ L+ ++D+E+ F G + D + RGFGFV + ++A+ + Sbjct: 3 GCRVFIGRLNPAAREKDVERFFKGYGRIRDIDL--------KRGFGFVEFEDPRDADDAV 54 Query: 333 KYLDSSVLEGRVITVE 380 LD L +T+E Sbjct: 55 YELDGKELCSERVTIE 70
>PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-binding protein| crp79) (Poly(A)-binding protein) (PABP) (Meiotic expression up-regulated protein 5) Length = 710 Score = 35.4 bits (80), Expect = 0.092 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 12/98 (12%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEV-------IDASIVLD---PWTRESRG--F 287 E+ + ++V + SRL+D ++ KHFS G+V +D+ + P+ G + Sbjct: 13 EDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQY 72 Query: 288 GFVTMANLKEAERCIKYLDSSVLEGRVITVEKILLTAA 401 GFV N + E +K L R +T++ ++ A Sbjct: 73 GFVKFVNAESIEEVLKDAKGMTLGQRKLTIKARVVNPA 110 Score = 29.6 bits (65), Expect = 5.0 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%) Frame = +3 Query: 156 NNLFVTGLSSRLTD--RDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 +NL+V L + LE FS G ++ + + P + S+G+GFV ++ A R Sbjct: 382 SNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRA 441 Query: 330 IKYLDSSVLEGRVITVEKILLTAA 401 L G ++ ++I + A Sbjct: 442 -----KDTLNGMMVGKKRIFVCFA 460
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 35.0 bits (79), Expect = 0.12 Identities = 21/77 (27%), Positives = 36/77 (46%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 P LFV LS +TD L KHF G+++ + + + +GF F+ N + + Sbjct: 237 PSRILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNE 296 Query: 330 IKYLDSSVLEGRVITVE 380 +K + GR + +E Sbjct: 297 LKDKSCRKIAGRPLRME 313
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 35.0 bits (79), Expect = 0.12 Identities = 18/80 (22%), Positives = 41/80 (51%) Frame = +3 Query: 144 ENPGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAE 323 E ++FV ++ +T +E HF G++ +++ D T +G+G++ + E Sbjct: 60 EADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYRE 119 Query: 324 RCIKYLDSSVLEGRVITVEK 383 + ++ L+ L+G+ I V + Sbjct: 120 KALQ-LNGGELKGKKIAVSR 138
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 35.0 bits (79), Expect = 0.12 Identities = 21/77 (27%), Positives = 39/77 (50%) Frame = +3 Query: 150 PGNNLFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERC 329 P N +++ GLSS ++D+ L +HF G V+ +V D +G V + +++A+ Sbjct: 516 PTNCVWLDGLSSNVSDQYLTRHFCRYGPVV--KVVFD----RLKGMALVLYSEIEDAQAA 569 Query: 330 IKYLDSSVLEGRVITVE 380 +K + G I V+ Sbjct: 570 VKETKGRKIGGNKIKVD 586
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 35.0 bits (79), Expect = 0.12 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = +3 Query: 177 LSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRE-SRGFGFVTMANLKEAERCIKYLDSSV 353 L+ +T + + FST G++ + ++ S+G+ +V N EAE+ +K++D Sbjct: 168 LTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQ 227 Query: 354 LEGRVITVEKIL 389 ++G+ IT +L Sbjct: 228 IDGQEITATAVL 239
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 35.0 bits (79), Expect = 0.12 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = +3 Query: 177 LSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRE-SRGFGFVTMANLKEAERCIKYLDSSV 353 L+ +T + + FST G++ + ++ S+G+ +V N EAE+ +K++D Sbjct: 168 LTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQ 227 Query: 354 LEGRVITVEKIL 389 ++G+ IT +L Sbjct: 228 IDGQEITATAVL 239
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 35.0 bits (79), Expect = 0.12 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = +3 Query: 177 LSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRE-SRGFGFVTMANLKEAERCIKYLDSSV 353 L+ +T + + FST G++ + ++ S+G+ +V N EAE+ +K++D Sbjct: 168 LTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQ 227 Query: 354 LEGRVITVEKIL 389 ++G+ IT +L Sbjct: 228 IDGQEITATAVL 239
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 35.0 bits (79), Expect = 0.12 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = +3 Query: 177 LSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRE-SRGFGFVTMANLKEAERCIKYLDSSV 353 L+ +T + + FST G++ + ++ S+G+ +V N EAE+ +K++D Sbjct: 168 LTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQ 227 Query: 354 LEGRVITVEKIL 389 ++G+ IT +L Sbjct: 228 IDGQEITATAVL 239
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 35.0 bits (79), Expect = 0.12 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = +3 Query: 177 LSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRE-SRGFGFVTMANLKEAERCIKYLDSSV 353 L+ +T + + FST G++ + ++ S+G+ +V N EAE+ +K++D Sbjct: 168 LTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQ 227 Query: 354 LEGRVITVEKIL 389 ++G+ IT +L Sbjct: 228 IDGQEITATAVL 239
>SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein enhancer of| deformed) (52-kDa bracketing protein) (B52 protein) Length = 375 Score = 35.0 bits (79), Expect = 0.12 Identities = 24/70 (34%), Positives = 36/70 (51%) Frame = +3 Query: 162 LFVTGLSSRLTDRDLEKHFSTEGEVIDASIVLDPWTRESRGFGFVTMANLKEAERCIKYL 341 L V LSSR++ +DL+ + GEV A ++ R G V A+L + + I+ L Sbjct: 121 LIVENLSSRVSWQDLKDYMRQAGEVTYADA-----HKQRRNEGVVEFASLSDMKTAIEKL 175 Query: 342 DSSVLEGRVI 371 D + L GR I Sbjct: 176 DDTELNGRRI 185 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,202,922 Number of Sequences: 219361 Number of extensions: 1152443 Number of successful extensions: 3750 Number of sequences better than 10.0: 312 Number of HSP's better than 10.0 without gapping: 3482 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3729 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3812186532 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
