| Clone Name | basd0e09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK065578.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026M08, full insert sequence Length = 1438 Score = 281 bits (142), Expect = 1e-72 Identities = 324/382 (84%), Gaps = 2/382 (0%) Strand = Plus / Plus Query: 102 aggtacaggagtcgttcaaggagtgtggactcgagtgatgttgagaaccctgggaacaat 161 ||||| ||||||||||| || ||||||||||| ||||||||||| |||||||||||||| Sbjct: 165 aggtataggagtcgttctagaagtgtggactcaagtgatgttgaaaaccctgggaacaac 224 Query: 162 ctctttgtgactggtttatcatctcgtctaactgatcgagatctggagaagcatttctct 221 || | ||| ||||| ||||| ||||| | || ||||||||||||||||| || || ||| Sbjct: 225 ctgtatgttactggcttatctgctcgtgtgacagatcgagatctggagaaacacttttct 284 Query: 222 acagagggagaggtgattgatgcaagtattgtacttgatccatggacaagggaatcacgg 281 | ||||||||||| |||||||| || || ||||||||||||||||||||||||| ||| Sbjct: 285 gctgagggagaggttattgatgctagcatagtacttgatccatggacaagggaattccgg 344 Query: 282 ggatttggatttgttaccatggccaatcttaaggaggcagaacgctgcatcaaatatctc 341 ||||||||||||||||||||||| | | |||||||||| || | |||||||||||||| Sbjct: 345 ggatttggatttgttaccatggctactgttaaggaggctgatctttgcatcaaatatcta 404 Query: 342 gacagttcagtgctggaaggtcgtgtcattactgttgagaagattttgttgacagcagca 401 ||| | |||||| ||||||||||||| || ||||| |||||| ||||||||||||||||| Sbjct: 405 gaccgctcagtgttggaaggtcgtgtgataactgtagagaagcttttgttgacagcagca 464 Query: 402 -ggttgatgcccgcagctgtatggcatcaaattcaaaagatacacaacctaagatcgaaa 460 ||| |||| ||| |||| | ||||||||||||||| ||||||||| | | ||| Sbjct: 465 gggtagatgtccgttgctgctctacgtcaaattcaaaagatttacaacctaacagccaaa 524 Query: 461 caatgctacctcaaccaaaggg 482 | |||||||||||||||||||| Sbjct: 525 c-atgctacctcaaccaaaggg 545
>gb|AY105790.1| Zea mays PCO079761 mRNA sequence Length = 1402 Score = 258 bits (130), Expect = 2e-65 Identities = 259/302 (85%) Strand = Plus / Plus Query: 102 aggtacaggagtcgttcaaggagtgtggactcgagtgatgttgagaaccctgggaacaat 161 |||||| | ||||| || |||||||| ||||| ||||||| ||| |||||||||||||| Sbjct: 165 aggtaccgaagtcgctctaggagtgtcgactctagtgatgctgaaaaccctgggaacaac 224 Query: 162 ctctttgtgactggtttatcatctcgtctaactgatcgagatctggagaagcatttctct 221 || | |||||||||||| || ||||| |||| |||||||||||||||||||| ||||| Sbjct: 225 ctgtatgtgactggtttgtcggctcgtgtaacggatcgagatctggagaagcacttctcc 284 Query: 222 acagagggagaggtgattgatgcaagtattgtacttgatccatggacaagggaatcacgg 281 || ||||| ||||||||||||||||| |||| |||||| |||||||||||||||||| Sbjct: 285 actgagggtgaggtgattgatgcaagcgttgtgtatgatccttggacaagggaatcacgg 344 Query: 282 ggatttggatttgttaccatggccaatcttaaggaggcagaacgctgcatcaaatatctc 341 || ||||| |||||||||||||| | |||| || ||||| ||||||||||||||||| Sbjct: 345 gggtttggttttgttaccatggctgctgttaaagatgcagatcgctgcatcaaatatctg 404 Query: 342 gacagttcagtgctggaaggtcgtgtcattactgttgagaagattttgttgacagcagca 401 ||| |||| ||| || ||||||| ||||| ||||||||||||||||||||||||||| || Sbjct: 405 gaccgttctgtgttgcaaggtcgggtcataactgttgagaagattttgttgacagcaaca 464 Query: 402 gg 403 || Sbjct: 465 gg 466
>ref|NM_187458.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 975 Score = 236 bits (119), Expect = 6e-59 Identities = 230/267 (86%) Strand = Plus / Plus Query: 117 tcaaggagtgtggactcgagtgatgttgagaaccctgggaacaatctctttgtgactggt 176 ||||| ||||||||||| ||||||||||| |||||||||||||| || | ||| ||||| Sbjct: 19 tcaagaagtgtggactcaagtgatgttgaaaaccctgggaacaacctgtatgttactggc 78 Query: 177 ttatcatctcgtctaactgatcgagatctggagaagcatttctctacagagggagaggtg 236 ||||| ||||| | || ||||||||||||||||| || || ||| | ||||||||||| Sbjct: 79 ttatctgctcgtgtgacagatcgagatctggagaaacacttttctgctgagggagaggtt 138 Query: 237 attgatgcaagtattgtacttgatccatggacaagggaatcacggggatttggatttgtt 296 |||||||| || || |||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 139 attgatgctagcatagtacttgatccatggacaagggaatcccggggatttggatttgtt 198 Query: 297 accatggccaatcttaaggaggcagaacgctgcatcaaatatctcgacagttcagtgctg 356 |||||||| | | |||||||||| || | |||||||||||||| ||| | |||||| || Sbjct: 199 accatggctactgttaaggaggctgatctttgcatcaaatatctagaccgctcagtgttg 258 Query: 357 gaaggtcgtgtcattactgttgagaag 383 ||||||||||| || ||||| |||||| Sbjct: 259 gaaggtcgtgtgataactgtagagaag 285
>gb|BT018387.1| Zea mays clone EL01N0313G10.d mRNA sequence Length = 1493 Score = 234 bits (118), Expect = 2e-58 Identities = 241/282 (85%) Strand = Plus / Plus Query: 102 aggtacaggagtcgttcaaggagtgtggactcgagtgatgttgagaaccctgggaacaat 161 |||||| | ||||| || |||||||| ||||| ||||||| ||| |||||||||||||| Sbjct: 167 aggtaccgaagtcgctctaggagtgtcgactctagtgatgctgaaaaccctgggaacaac 226 Query: 162 ctctttgtgactggtttatcatctcgtctaactgatcgagatctggagaagcatttctct 221 || | |||||||||||| ||| ||||| |||| |||||||||||||||||||| ||||| Sbjct: 227 ctgtatgtgactggtttgtcagctcgtgtaacggatcgagatctggagaagcacttctcc 286 Query: 222 acagagggagaggtgattgatgcaagtattgtacttgatccatggacaagggaatcacgg 281 || |||| ||||||||||||||||| ||||| |||||| |||||||||||||||||| Sbjct: 287 actaagggtgaggtgattgatgcaagcgttgtatatgatccttggacaagggaatcacgg 346 Query: 282 ggatttggatttgttaccatggccaatcttaaggaggcagaacgctgcatcaaatatctc 341 || ||||| |||||||||||||| | |||| || ||||| ||||||||||||||||| Sbjct: 347 ggttttggttttgttaccatggctgctgttaaagatgcagatcgctgcatcaaatatctg 406 Query: 342 gacagttcagtgctggaaggtcgtgtcattactgttgagaag 383 ||| |||| ||| || ||||||| ||||| |||||||||||| Sbjct: 407 gaccgttctgtgttgcaaggtcgggtcataactgttgagaag 448 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 380 gaagattttgttgacagcagcagg 403 ||||||||||||||||||| |||| Sbjct: 560 gaagattttgttgacagcaacagg 583
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 151 bits (76), Expect = 3e-33 Identities = 133/152 (87%) Strand = Plus / Minus Query: 232 aggtgattgatgcaagtattgtacttgatccatggacaagggaatcacggggatttggat 291 |||| |||||||| || || |||||||||||||||||||||||||| ||||||||||||| Sbjct: 8741406 aggttattgatgctagcatagtacttgatccatggacaagggaatcccggggatttggat 8741347 Query: 292 ttgttaccatggccaatcttaaggaggcagaacgctgcatcaaatatctcgacagttcag 351 ||||||||||||| | | |||||||||| || | |||||||||||||| ||| | |||| Sbjct: 8741346 ttgttaccatggctactgttaaggaggctgatctttgcatcaaatatctagaccgctcag 8741287 Query: 352 tgctggaaggtcgtgtcattactgttgagaag 383 || ||||||||||||| || ||||| |||||| Sbjct: 8741286 tgttggaaggtcgtgtgataactgtagagaag 8741255 Score = 89.7 bits (45), Expect = 8e-15 Identities = 96/113 (84%) Strand = Plus / Minus Query: 123 agtgtggactcgagtgatgttgagaaccctgggaacaatctctttgtgactggtttatca 182 ||||||||||| ||||||||||| |||||||||||||| || | ||| ||||| ||||| Sbjct: 8741586 agtgtggactcaagtgatgttgaaaaccctgggaacaacctgtatgttactggcttatct 8741527 Query: 183 tctcgtctaactgatcgagatctggagaagcatttctctacagagggagaggt 235 ||||| | || ||||||||||||||||| || || ||| | ||||||||||| Sbjct: 8741526 gctcgtgtgacagatcgagatctggagaaacacttttctgctgagggagaggt 8741474 Score = 67.9 bits (34), Expect = 3e-08 Identities = 59/66 (89%), Gaps = 1/66 (1%) Strand = Plus / Minus Query: 427 tcaaattcaaaagatacacaacctaagatcgaaacaatgctacctcaaccaaagggttgt 486 ||||||||||||||| ||||||||| | | ||||| ||||||||||||||||||||||| Sbjct: 8741103 tcaaattcaaaagatttacaacctaacagccaaaca-tgctacctcaaccaaagggttgt 8741045 Query: 487 acgccc 492 | |||| Sbjct: 8741044 atgccc 8741039
>gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1012B02, complete sequence Length = 115270 Score = 151 bits (76), Expect = 3e-33 Identities = 133/152 (87%) Strand = Plus / Minus Query: 232 aggtgattgatgcaagtattgtacttgatccatggacaagggaatcacggggatttggat 291 |||| |||||||| || || |||||||||||||||||||||||||| ||||||||||||| Sbjct: 85057 aggttattgatgctagcatagtacttgatccatggacaagggaatcccggggatttggat 84998 Query: 292 ttgttaccatggccaatcttaaggaggcagaacgctgcatcaaatatctcgacagttcag 351 ||||||||||||| | | |||||||||| || | |||||||||||||| ||| | |||| Sbjct: 84997 ttgttaccatggctactgttaaggaggctgatctttgcatcaaatatctagaccgctcag 84938 Query: 352 tgctggaaggtcgtgtcattactgttgagaag 383 || ||||||||||||| || ||||| |||||| Sbjct: 84937 tgttggaaggtcgtgtgataactgtagagaag 84906 Score = 89.7 bits (45), Expect = 8e-15 Identities = 96/113 (84%) Strand = Plus / Minus Query: 123 agtgtggactcgagtgatgttgagaaccctgggaacaatctctttgtgactggtttatca 182 ||||||||||| ||||||||||| |||||||||||||| || | ||| ||||| ||||| Sbjct: 85237 agtgtggactcaagtgatgttgaaaaccctgggaacaacctgtatgttactggcttatct 85178 Query: 183 tctcgtctaactgatcgagatctggagaagcatttctctacagagggagaggt 235 ||||| | || ||||||||||||||||| || || ||| | ||||||||||| Sbjct: 85177 gctcgtgtgacagatcgagatctggagaaacacttttctgctgagggagaggt 85125 Score = 67.9 bits (34), Expect = 3e-08 Identities = 59/66 (89%), Gaps = 1/66 (1%) Strand = Plus / Minus Query: 427 tcaaattcaaaagatacacaacctaagatcgaaacaatgctacctcaaccaaagggttgt 486 ||||||||||||||| ||||||||| | | ||||| ||||||||||||||||||||||| Sbjct: 84754 tcaaattcaaaagatttacaacctaacagccaaaca-tgctacctcaaccaaagggttgt 84696 Query: 487 acgccc 492 | |||| Sbjct: 84695 atgccc 84690
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 151 bits (76), Expect = 3e-33 Identities = 133/152 (87%) Strand = Plus / Minus Query: 232 aggtgattgatgcaagtattgtacttgatccatggacaagggaatcacggggatttggat 291 |||| |||||||| || || |||||||||||||||||||||||||| ||||||||||||| Sbjct: 8739241 aggttattgatgctagcatagtacttgatccatggacaagggaatcccggggatttggat 8739182 Query: 292 ttgttaccatggccaatcttaaggaggcagaacgctgcatcaaatatctcgacagttcag 351 ||||||||||||| | | |||||||||| || | |||||||||||||| ||| | |||| Sbjct: 8739181 ttgttaccatggctactgttaaggaggctgatctttgcatcaaatatctagaccgctcag 8739122 Query: 352 tgctggaaggtcgtgtcattactgttgagaag 383 || ||||||||||||| || ||||| |||||| Sbjct: 8739121 tgttggaaggtcgtgtgataactgtagagaag 8739090 Score = 89.7 bits (45), Expect = 8e-15 Identities = 96/113 (84%) Strand = Plus / Minus Query: 123 agtgtggactcgagtgatgttgagaaccctgggaacaatctctttgtgactggtttatca 182 ||||||||||| ||||||||||| |||||||||||||| || | ||| ||||| ||||| Sbjct: 8739421 agtgtggactcaagtgatgttgaaaaccctgggaacaacctgtatgttactggcttatct 8739362 Query: 183 tctcgtctaactgatcgagatctggagaagcatttctctacagagggagaggt 235 ||||| | || ||||||||||||||||| || || ||| | ||||||||||| Sbjct: 8739361 gctcgtgtgacagatcgagatctggagaaacacttttctgctgagggagaggt 8739309 Score = 67.9 bits (34), Expect = 3e-08 Identities = 59/66 (89%), Gaps = 1/66 (1%) Strand = Plus / Minus Query: 427 tcaaattcaaaagatacacaacctaagatcgaaacaatgctacctcaaccaaagggttgt 486 ||||||||||||||| ||||||||| | | ||||| ||||||||||||||||||||||| Sbjct: 8738938 tcaaattcaaaagatttacaacctaacagccaaaca-tgctacctcaaccaaagggttgt 8738880 Query: 487 acgccc 492 | |||| Sbjct: 8738879 atgccc 8738874
>gb|BT019263.1| Zea mays clone Contig936.F mRNA sequence Length = 1108 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 276 tcacggggatttggatttgttaccatggc 304 |||||||||||||| |||||||| ||||| Sbjct: 320 tcacggggatttggttttgttactatggc 292
>ref|XM_504178.1| Yarrowia lipolytica CLIB122, YALI0E20207g predicted mRNA Length = 1395 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 46 gaagacagagactcgagaggc 66 ||||||||||||||||||||| Sbjct: 983 gaagacagagactcgagaggc 963
>emb|AJ224324.1|HVH224324 Hordeum vulgare cv. Haisa mRNA for cp31BHv protein Length = 1139 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 282 ggatttggatttgttaccatg 302 ||||||||||||||||||||| Sbjct: 502 ggatttggatttgttaccatg 522
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 46 gaagacagagactcgagaggc 66 ||||||||||||||||||||| Sbjct: 2399129 gaagacagagactcgagaggc 2399109
>gb|M74566.1|MZENBPAA Zea mays nucleic acid-binding protein (NBP) Length = 1251 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 276 tcacggggatttggatttgttaccatggc 304 |||||||||||||| |||||||| ||||| Sbjct: 898 tcacggggatttggttttgttactatggc 926
>gb|AC116697.7| Mus musculus chromosome 3, clone RP24-444C12, complete sequence Length = 183146 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 tctacagagggagaggtgat 238 |||||||||||||||||||| Sbjct: 124873 tctacagagggagaggtgat 124892
>gb|AC154508.2| Mus musculus BAC clone RP24-96P6 from chromosome 16, complete sequence Length = 214625 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 492 caccgttattttatttttct 511 |||||||||||||||||||| Sbjct: 188680 caccgttattttatttttct 188661
>ref|XM_763284.1| Giardia lamblia ATCC 50803 MAP kinase phosphatase (GLP_15_17049_19172) partial mRNA Length = 2124 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cgttattttatttttctgta 514 |||||||||||||||||||| Sbjct: 738 cgttattttatttttctgta 719
>emb|AL136131.15| Human DNA sequence from clone RP1-261G23 on chromosome 6p12.2-21.1 Contains the KIAA0110 gene, the FLJ30845 gene, the MRPS18A gene for mitochondrial ribosomal protein S18A, a pseudogene similar to OPA-interacting protein (OIP21) a novel gene, the VEGF gene for vascular endothelial growth factor and two CpG islands, complete sequence Length = 172033 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 tctctttgtgactggtttat 180 |||||||||||||||||||| Sbjct: 67161 tctctttgtgactggtttat 67180
>emb|AL133476.17| Human DNA sequence from clone RP11-156G14 on chromosome 9p13.1-13.3 Contains the 3' end of a novel gene, a protein associated with PRK1 (AWP1) pseudogene, a novel gene (KIAA0375), a ribosomal protein L36a (L44L, RPL44) (RPL36A) pseudogene, a novel gene, a ribosomal protein S29 (RPS29) pseudogene and a CpG island, complete sequence Length = 153826 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 tctctttgtgactggtttat 180 |||||||||||||||||||| Sbjct: 52867 tctctttgtgactggtttat 52886
>gb|AC154509.2| Mus musculus BAC clone RP23-207P21 from chromosome 16, complete sequence Length = 203692 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 492 caccgttattttatttttct 511 |||||||||||||||||||| Sbjct: 89940 caccgttattttatttttct 89959
>emb|CR383677.15| Zebrafish DNA sequence from clone CH211-157P16 in linkage group 12, complete sequence Length = 164387 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 383 gattttgttgacagcagcaggttg 406 ||||||||||||||| |||||||| Sbjct: 82604 gattttgttgacagctgcaggttg 82627
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 agcagcaggttgatgcccgc 414 |||||||||||||||||||| Sbjct: 5366751 agcagcaggttgatgcccgc 5366732
>gb|AC068616.5| Homo sapiens BAC clone RP11-580J2 from 2, complete sequence Length = 152573 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 aaattcaaaagatacacaac 448 |||||||||||||||||||| Sbjct: 111741 aaattcaaaagatacacaac 111760
>emb|BX120013.5| Zebrafish DNA sequence from clone DKEY-76H10, complete sequence Length = 170264 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 422 tggcatcaaattcaaaagatacac 445 ||||||||||||||||| |||||| Sbjct: 23111 tggcatcaaattcaaaacatacac 23088
>gb|AC151355.2| Xenopus tropicalis clone ISB-52K19, complete sequence Length = 55519 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 ccgcagctgtatggcatcaa 430 |||||||||||||||||||| Sbjct: 50885 ccgcagctgtatggcatcaa 50904
>emb|CR385044.5| Zebrafish DNA sequence from clone CH211-51N14 in linkage group 20, complete sequence Length = 59170 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 383 gattttgttgacagcagcaggttg 406 ||||||||||||||| |||||||| Sbjct: 45424 gattttgttgacagctgcaggttg 45401 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,300,378 Number of Sequences: 3902068 Number of extensions: 5300378 Number of successful extensions: 101052 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100901 Number of HSP's gapped (non-prelim): 147 length of query: 514 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 491 effective length of database: 17,143,297,704 effective search space: 8417359172664 effective search space used: 8417359172664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)