ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd0e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK065578.1| Oryza sativa (japonica cultivar-group) cDNA clon... 281 1e-72
2gb|AY105790.1| Zea mays PCO079761 mRNA sequence 258 2e-65
3ref|NM_187458.1| Oryza sativa (japonica cultivar-group), predic... 236 6e-59
4gb|BT018387.1| Zea mays clone EL01N0313G10.d mRNA sequence 234 2e-58
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 151 3e-33
6gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome... 151 3e-33
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
8gb|BT019263.1| Zea mays clone Contig936.F mRNA sequence 42 1.8
9ref|XM_504178.1| Yarrowia lipolytica CLIB122, YALI0E20207g predi... 42 1.8
10emb|AJ224324.1|HVH224324 Hordeum vulgare cv. Haisa mRNA for cp31... 42 1.8
11emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ... 42 1.8
12gb|M74566.1|MZENBPAA Zea mays nucleic acid-binding protein (NBP) 42 1.8
13gb|AC116697.7| Mus musculus chromosome 3, clone RP24-444C12, com... 40 6.9
14gb|AC154508.2| Mus musculus BAC clone RP24-96P6 from chromosome ... 40 6.9
15ref|XM_763284.1| Giardia lamblia ATCC 50803 MAP kinase phosphata... 40 6.9
16emb|AL136131.15| Human DNA sequence from clone RP1-261G23 on chr... 40 6.9
17emb|AL133476.17| Human DNA sequence from clone RP11-156G14 on ch... 40 6.9
18gb|AC154509.2| Mus musculus BAC clone RP23-207P21 from chromosom... 40 6.9
19emb|CR383677.15| Zebrafish DNA sequence from clone CH211-157P16 ... 40 6.9
20gb|CP000249.1| Frankia sp. CcI3, complete genome 40 6.9
21gb|AC068616.5| Homo sapiens BAC clone RP11-580J2 from 2, complet... 40 6.9
22emb|BX120013.5| Zebrafish DNA sequence from clone DKEY-76H10, co... 40 6.9
23gb|AC151355.2| Xenopus tropicalis clone ISB-52K19, complete sequ... 40 6.9
24emb|CR385044.5| Zebrafish DNA sequence from clone CH211-51N14 in... 40 6.9

>dbj|AK065578.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026M08, full
           insert sequence
          Length = 1438

 Score =  281 bits (142), Expect = 1e-72
 Identities = 324/382 (84%), Gaps = 2/382 (0%)
 Strand = Plus / Plus

                                                                       
Query: 102 aggtacaggagtcgttcaaggagtgtggactcgagtgatgttgagaaccctgggaacaat 161
           ||||| ||||||||||| || ||||||||||| ||||||||||| |||||||||||||| 
Sbjct: 165 aggtataggagtcgttctagaagtgtggactcaagtgatgttgaaaaccctgggaacaac 224

                                                                       
Query: 162 ctctttgtgactggtttatcatctcgtctaactgatcgagatctggagaagcatttctct 221
           || | ||| ||||| |||||  ||||| | || ||||||||||||||||| || || |||
Sbjct: 225 ctgtatgttactggcttatctgctcgtgtgacagatcgagatctggagaaacacttttct 284

                                                                       
Query: 222 acagagggagaggtgattgatgcaagtattgtacttgatccatggacaagggaatcacgg 281
            | ||||||||||| |||||||| || || |||||||||||||||||||||||||  |||
Sbjct: 285 gctgagggagaggttattgatgctagcatagtacttgatccatggacaagggaattccgg 344

                                                                       
Query: 282 ggatttggatttgttaccatggccaatcttaaggaggcagaacgctgcatcaaatatctc 341
           ||||||||||||||||||||||| | | |||||||||| || |  |||||||||||||| 
Sbjct: 345 ggatttggatttgttaccatggctactgttaaggaggctgatctttgcatcaaatatcta 404

                                                                       
Query: 342 gacagttcagtgctggaaggtcgtgtcattactgttgagaagattttgttgacagcagca 401
           ||| | |||||| ||||||||||||| || ||||| |||||| |||||||||||||||||
Sbjct: 405 gaccgctcagtgttggaaggtcgtgtgataactgtagagaagcttttgttgacagcagca 464

                                                                       
Query: 402 -ggttgatgcccgcagctgtatggcatcaaattcaaaagatacacaacctaagatcgaaa 460
            ||| |||| |||  ||||     | |||||||||||||||  ||||||||| | | |||
Sbjct: 465 gggtagatgtccgttgctgctctacgtcaaattcaaaagatttacaacctaacagccaaa 524

                                 
Query: 461 caatgctacctcaaccaaaggg 482
           | ||||||||||||||||||||
Sbjct: 525 c-atgctacctcaaccaaaggg 545



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>gb|AY105790.1| Zea mays PCO079761 mRNA sequence
          Length = 1402

 Score =  258 bits (130), Expect = 2e-65
 Identities = 259/302 (85%)
 Strand = Plus / Plus

                                                                       
Query: 102 aggtacaggagtcgttcaaggagtgtggactcgagtgatgttgagaaccctgggaacaat 161
           |||||| | ||||| || |||||||| ||||| ||||||| ||| |||||||||||||| 
Sbjct: 165 aggtaccgaagtcgctctaggagtgtcgactctagtgatgctgaaaaccctgggaacaac 224

                                                                       
Query: 162 ctctttgtgactggtttatcatctcgtctaactgatcgagatctggagaagcatttctct 221
           || | |||||||||||| ||  ||||| |||| |||||||||||||||||||| ||||| 
Sbjct: 225 ctgtatgtgactggtttgtcggctcgtgtaacggatcgagatctggagaagcacttctcc 284

                                                                       
Query: 222 acagagggagaggtgattgatgcaagtattgtacttgatccatggacaagggaatcacgg 281
           || ||||| |||||||||||||||||  ||||   |||||| ||||||||||||||||||
Sbjct: 285 actgagggtgaggtgattgatgcaagcgttgtgtatgatccttggacaagggaatcacgg 344

                                                                       
Query: 282 ggatttggatttgttaccatggccaatcttaaggaggcagaacgctgcatcaaatatctc 341
           || ||||| ||||||||||||||   | |||| || ||||| ||||||||||||||||| 
Sbjct: 345 gggtttggttttgttaccatggctgctgttaaagatgcagatcgctgcatcaaatatctg 404

                                                                       
Query: 342 gacagttcagtgctggaaggtcgtgtcattactgttgagaagattttgttgacagcagca 401
           ||| |||| ||| || ||||||| ||||| ||||||||||||||||||||||||||| ||
Sbjct: 405 gaccgttctgtgttgcaaggtcgggtcataactgttgagaagattttgttgacagcaaca 464

             
Query: 402 gg 403
           ||
Sbjct: 465 gg 466



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>ref|NM_187458.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 975

 Score =  236 bits (119), Expect = 6e-59
 Identities = 230/267 (86%)
 Strand = Plus / Plus

                                                                       
Query: 117 tcaaggagtgtggactcgagtgatgttgagaaccctgggaacaatctctttgtgactggt 176
           ||||| ||||||||||| ||||||||||| |||||||||||||| || | ||| ||||| 
Sbjct: 19  tcaagaagtgtggactcaagtgatgttgaaaaccctgggaacaacctgtatgttactggc 78

                                                                       
Query: 177 ttatcatctcgtctaactgatcgagatctggagaagcatttctctacagagggagaggtg 236
           |||||  ||||| | || ||||||||||||||||| || || ||| | ||||||||||| 
Sbjct: 79  ttatctgctcgtgtgacagatcgagatctggagaaacacttttctgctgagggagaggtt 138

                                                                       
Query: 237 attgatgcaagtattgtacttgatccatggacaagggaatcacggggatttggatttgtt 296
           |||||||| || || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 139 attgatgctagcatagtacttgatccatggacaagggaatcccggggatttggatttgtt 198

                                                                       
Query: 297 accatggccaatcttaaggaggcagaacgctgcatcaaatatctcgacagttcagtgctg 356
           |||||||| | | |||||||||| || |  |||||||||||||| ||| | |||||| ||
Sbjct: 199 accatggctactgttaaggaggctgatctttgcatcaaatatctagaccgctcagtgttg 258

                                      
Query: 357 gaaggtcgtgtcattactgttgagaag 383
           ||||||||||| || ||||| ||||||
Sbjct: 259 gaaggtcgtgtgataactgtagagaag 285



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>gb|BT018387.1| Zea mays clone EL01N0313G10.d mRNA sequence
          Length = 1493

 Score =  234 bits (118), Expect = 2e-58
 Identities = 241/282 (85%)
 Strand = Plus / Plus

                                                                       
Query: 102 aggtacaggagtcgttcaaggagtgtggactcgagtgatgttgagaaccctgggaacaat 161
           |||||| | ||||| || |||||||| ||||| ||||||| ||| |||||||||||||| 
Sbjct: 167 aggtaccgaagtcgctctaggagtgtcgactctagtgatgctgaaaaccctgggaacaac 226

                                                                       
Query: 162 ctctttgtgactggtttatcatctcgtctaactgatcgagatctggagaagcatttctct 221
           || | |||||||||||| ||| ||||| |||| |||||||||||||||||||| ||||| 
Sbjct: 227 ctgtatgtgactggtttgtcagctcgtgtaacggatcgagatctggagaagcacttctcc 286

                                                                       
Query: 222 acagagggagaggtgattgatgcaagtattgtacttgatccatggacaagggaatcacgg 281
           ||  |||| |||||||||||||||||  |||||  |||||| ||||||||||||||||||
Sbjct: 287 actaagggtgaggtgattgatgcaagcgttgtatatgatccttggacaagggaatcacgg 346

                                                                       
Query: 282 ggatttggatttgttaccatggccaatcttaaggaggcagaacgctgcatcaaatatctc 341
           || ||||| ||||||||||||||   | |||| || ||||| ||||||||||||||||| 
Sbjct: 347 ggttttggttttgttaccatggctgctgttaaagatgcagatcgctgcatcaaatatctg 406

                                                     
Query: 342 gacagttcagtgctggaaggtcgtgtcattactgttgagaag 383
           ||| |||| ||| || ||||||| ||||| ||||||||||||
Sbjct: 407 gaccgttctgtgttgcaaggtcgggtcataactgttgagaag 448



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 380 gaagattttgttgacagcagcagg 403
           ||||||||||||||||||| ||||
Sbjct: 560 gaagattttgttgacagcaacagg 583



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  151 bits (76), Expect = 3e-33
 Identities = 133/152 (87%)
 Strand = Plus / Minus

                                                                           
Query: 232     aggtgattgatgcaagtattgtacttgatccatggacaagggaatcacggggatttggat 291
               |||| |||||||| || || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 8741406 aggttattgatgctagcatagtacttgatccatggacaagggaatcccggggatttggat 8741347

                                                                           
Query: 292     ttgttaccatggccaatcttaaggaggcagaacgctgcatcaaatatctcgacagttcag 351
               ||||||||||||| | | |||||||||| || |  |||||||||||||| ||| | ||||
Sbjct: 8741346 ttgttaccatggctactgttaaggaggctgatctttgcatcaaatatctagaccgctcag 8741287

                                               
Query: 352     tgctggaaggtcgtgtcattactgttgagaag 383
               || ||||||||||||| || ||||| ||||||
Sbjct: 8741286 tgttggaaggtcgtgtgataactgtagagaag 8741255



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 96/113 (84%)
 Strand = Plus / Minus

                                                                           
Query: 123     agtgtggactcgagtgatgttgagaaccctgggaacaatctctttgtgactggtttatca 182
               ||||||||||| ||||||||||| |||||||||||||| || | ||| ||||| ||||| 
Sbjct: 8741586 agtgtggactcaagtgatgttgaaaaccctgggaacaacctgtatgttactggcttatct 8741527

                                                                    
Query: 183     tctcgtctaactgatcgagatctggagaagcatttctctacagagggagaggt 235
                ||||| | || ||||||||||||||||| || || ||| | |||||||||||
Sbjct: 8741526 gctcgtgtgacagatcgagatctggagaaacacttttctgctgagggagaggt 8741474



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 59/66 (89%), Gaps = 1/66 (1%)
 Strand = Plus / Minus

                                                                           
Query: 427     tcaaattcaaaagatacacaacctaagatcgaaacaatgctacctcaaccaaagggttgt 486
               |||||||||||||||  ||||||||| | | ||||| |||||||||||||||||||||||
Sbjct: 8741103 tcaaattcaaaagatttacaacctaacagccaaaca-tgctacctcaaccaaagggttgt 8741045

                     
Query: 487     acgccc 492
               | ||||
Sbjct: 8741044 atgccc 8741039



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>gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1012B02,
             complete sequence
          Length = 115270

 Score =  151 bits (76), Expect = 3e-33
 Identities = 133/152 (87%)
 Strand = Plus / Minus

                                                                         
Query: 232   aggtgattgatgcaagtattgtacttgatccatggacaagggaatcacggggatttggat 291
             |||| |||||||| || || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 85057 aggttattgatgctagcatagtacttgatccatggacaagggaatcccggggatttggat 84998

                                                                         
Query: 292   ttgttaccatggccaatcttaaggaggcagaacgctgcatcaaatatctcgacagttcag 351
             ||||||||||||| | | |||||||||| || |  |||||||||||||| ||| | ||||
Sbjct: 84997 ttgttaccatggctactgttaaggaggctgatctttgcatcaaatatctagaccgctcag 84938

                                             
Query: 352   tgctggaaggtcgtgtcattactgttgagaag 383
             || ||||||||||||| || ||||| ||||||
Sbjct: 84937 tgttggaaggtcgtgtgataactgtagagaag 84906



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 96/113 (84%)
 Strand = Plus / Minus

                                                                         
Query: 123   agtgtggactcgagtgatgttgagaaccctgggaacaatctctttgtgactggtttatca 182
             ||||||||||| ||||||||||| |||||||||||||| || | ||| ||||| ||||| 
Sbjct: 85237 agtgtggactcaagtgatgttgaaaaccctgggaacaacctgtatgttactggcttatct 85178

                                                                  
Query: 183   tctcgtctaactgatcgagatctggagaagcatttctctacagagggagaggt 235
              ||||| | || ||||||||||||||||| || || ||| | |||||||||||
Sbjct: 85177 gctcgtgtgacagatcgagatctggagaaacacttttctgctgagggagaggt 85125



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 59/66 (89%), Gaps = 1/66 (1%)
 Strand = Plus / Minus

                                                                         
Query: 427   tcaaattcaaaagatacacaacctaagatcgaaacaatgctacctcaaccaaagggttgt 486
             |||||||||||||||  ||||||||| | | ||||| |||||||||||||||||||||||
Sbjct: 84754 tcaaattcaaaagatttacaacctaacagccaaaca-tgctacctcaaccaaagggttgt 84696

                   
Query: 487   acgccc 492
             | ||||
Sbjct: 84695 atgccc 84690



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  151 bits (76), Expect = 3e-33
 Identities = 133/152 (87%)
 Strand = Plus / Minus

                                                                           
Query: 232     aggtgattgatgcaagtattgtacttgatccatggacaagggaatcacggggatttggat 291
               |||| |||||||| || || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 8739241 aggttattgatgctagcatagtacttgatccatggacaagggaatcccggggatttggat 8739182

                                                                           
Query: 292     ttgttaccatggccaatcttaaggaggcagaacgctgcatcaaatatctcgacagttcag 351
               ||||||||||||| | | |||||||||| || |  |||||||||||||| ||| | ||||
Sbjct: 8739181 ttgttaccatggctactgttaaggaggctgatctttgcatcaaatatctagaccgctcag 8739122

                                               
Query: 352     tgctggaaggtcgtgtcattactgttgagaag 383
               || ||||||||||||| || ||||| ||||||
Sbjct: 8739121 tgttggaaggtcgtgtgataactgtagagaag 8739090



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 96/113 (84%)
 Strand = Plus / Minus

                                                                           
Query: 123     agtgtggactcgagtgatgttgagaaccctgggaacaatctctttgtgactggtttatca 182
               ||||||||||| ||||||||||| |||||||||||||| || | ||| ||||| ||||| 
Sbjct: 8739421 agtgtggactcaagtgatgttgaaaaccctgggaacaacctgtatgttactggcttatct 8739362

                                                                    
Query: 183     tctcgtctaactgatcgagatctggagaagcatttctctacagagggagaggt 235
                ||||| | || ||||||||||||||||| || || ||| | |||||||||||
Sbjct: 8739361 gctcgtgtgacagatcgagatctggagaaacacttttctgctgagggagaggt 8739309



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 59/66 (89%), Gaps = 1/66 (1%)
 Strand = Plus / Minus

                                                                           
Query: 427     tcaaattcaaaagatacacaacctaagatcgaaacaatgctacctcaaccaaagggttgt 486
               |||||||||||||||  ||||||||| | | ||||| |||||||||||||||||||||||
Sbjct: 8738938 tcaaattcaaaagatttacaacctaacagccaaaca-tgctacctcaaccaaagggttgt 8738880

                     
Query: 487     acgccc 492
               | ||||
Sbjct: 8738879 atgccc 8738874



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>gb|BT019263.1| Zea mays clone Contig936.F mRNA sequence
          Length = 1108

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 276 tcacggggatttggatttgttaccatggc 304
           |||||||||||||| |||||||| |||||
Sbjct: 320 tcacggggatttggttttgttactatggc 292



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>ref|XM_504178.1| Yarrowia lipolytica CLIB122, YALI0E20207g predicted mRNA
          Length = 1395

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 46  gaagacagagactcgagaggc 66
           |||||||||||||||||||||
Sbjct: 983 gaagacagagactcgagaggc 963



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>emb|AJ224324.1|HVH224324 Hordeum vulgare cv. Haisa mRNA for cp31BHv protein
          Length = 1139

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 282 ggatttggatttgttaccatg 302
           |||||||||||||||||||||
Sbjct: 502 ggatttggatttgttaccatg 522



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>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 46      gaagacagagactcgagaggc 66
               |||||||||||||||||||||
Sbjct: 2399129 gaagacagagactcgagaggc 2399109



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>gb|M74566.1|MZENBPAA Zea mays nucleic acid-binding protein (NBP)
          Length = 1251

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 276 tcacggggatttggatttgttaccatggc 304
           |||||||||||||| |||||||| |||||
Sbjct: 898 tcacggggatttggttttgttactatggc 926



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>gb|AC116697.7| Mus musculus chromosome 3, clone RP24-444C12, complete sequence
          Length = 183146

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 219    tctacagagggagaggtgat 238
              ||||||||||||||||||||
Sbjct: 124873 tctacagagggagaggtgat 124892



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>gb|AC154508.2| Mus musculus BAC clone RP24-96P6 from chromosome 16, complete sequence
          Length = 214625

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 492    caccgttattttatttttct 511
              ||||||||||||||||||||
Sbjct: 188680 caccgttattttatttttct 188661



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>ref|XM_763284.1| Giardia lamblia ATCC 50803 MAP kinase phosphatase
           (GLP_15_17049_19172) partial mRNA
          Length = 2124

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 495 cgttattttatttttctgta 514
           ||||||||||||||||||||
Sbjct: 738 cgttattttatttttctgta 719



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>emb|AL136131.15| Human DNA sequence from clone RP1-261G23 on chromosome 6p12.2-21.1
             Contains the KIAA0110 gene, the FLJ30845 gene, the MRPS18A
             gene for mitochondrial ribosomal protein S18A, a
             pseudogene similar to OPA-interacting protein (OIP21) a
             novel gene, the VEGF gene for vascular endothelial growth
             factor and two CpG islands, complete sequence
          Length = 172033

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   tctctttgtgactggtttat 180
             ||||||||||||||||||||
Sbjct: 67161 tctctttgtgactggtttat 67180



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>emb|AL133476.17| Human DNA sequence from clone RP11-156G14 on chromosome 9p13.1-13.3
             Contains the 3' end of a novel gene, a protein associated
             with PRK1 (AWP1) pseudogene, a novel gene  (KIAA0375), a
             ribosomal protein L36a (L44L, RPL44) (RPL36A) pseudogene, 
             a novel gene, a ribosomal protein S29 (RPS29) pseudogene
             and a CpG island, complete sequence
          Length = 153826

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   tctctttgtgactggtttat 180
             ||||||||||||||||||||
Sbjct: 52867 tctctttgtgactggtttat 52886



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>gb|AC154509.2| Mus musculus BAC clone RP23-207P21 from chromosome 16, complete
             sequence
          Length = 203692

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 492   caccgttattttatttttct 511
             ||||||||||||||||||||
Sbjct: 89940 caccgttattttatttttct 89959



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>emb|CR383677.15| Zebrafish DNA sequence from clone CH211-157P16 in linkage group 12,
             complete sequence
          Length = 164387

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 383   gattttgttgacagcagcaggttg 406
             ||||||||||||||| ||||||||
Sbjct: 82604 gattttgttgacagctgcaggttg 82627



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 395     agcagcaggttgatgcccgc 414
               ||||||||||||||||||||
Sbjct: 5366751 agcagcaggttgatgcccgc 5366732



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>gb|AC068616.5| Homo sapiens BAC clone RP11-580J2 from 2, complete sequence
          Length = 152573

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 429    aaattcaaaagatacacaac 448
              ||||||||||||||||||||
Sbjct: 111741 aaattcaaaagatacacaac 111760



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>emb|BX120013.5| Zebrafish DNA sequence from clone DKEY-76H10, complete sequence
          Length = 170264

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 422   tggcatcaaattcaaaagatacac 445
             ||||||||||||||||| ||||||
Sbjct: 23111 tggcatcaaattcaaaacatacac 23088



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>gb|AC151355.2| Xenopus tropicalis clone ISB-52K19, complete sequence
          Length = 55519

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 411   ccgcagctgtatggcatcaa 430
             ||||||||||||||||||||
Sbjct: 50885 ccgcagctgtatggcatcaa 50904



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>emb|CR385044.5| Zebrafish DNA sequence from clone CH211-51N14 in linkage group 20,
             complete sequence
          Length = 59170

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 383   gattttgttgacagcagcaggttg 406
             ||||||||||||||| ||||||||
Sbjct: 45424 gattttgttgacagctgcaggttg 45401


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,300,378
Number of Sequences: 3902068
Number of extensions: 5300378
Number of successful extensions: 101052
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100901
Number of HSP's gapped (non-prelim): 147
length of query: 514
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 491
effective length of database: 17,143,297,704
effective search space: 8417359172664
effective search space used: 8417359172664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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