ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd0e05 |
|---|---|
| Clone Library Name | barley_pub |
>RPO2J_ARATH (Q38859) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| (DNA-directed RNA polymerase II 13.6 kDa polypeptide) Length = 116 Score = 188 bits (478), Expect = 7e-48 Identities = 90/114 (78%), Positives = 102/114 (89%) Frame = +1 Query: 184 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 363 MNAP+RYERFVVPEGTKKVS+++DTKI+NAASFT+EREDHTIGNI+RMQLHRD NV FAG Sbjct: 1 MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60 Query: 364 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFES 525 Y+LPHPL+YKIIVRIHT SQSSP QAY QAINDLDKEL+ LK FE E +F + Sbjct: 61 YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSN 114
>RPO2J_MOUSE (O08740) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| (DNA-directed RNA polymerase II 13.3 kDa polypeptide) (RPB11) (RPB14) Length = 117 Score = 124 bits (311), Expect = 2e-28 Identities = 57/105 (54%), Positives = 77/105 (73%) Frame = +1 Query: 184 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 363 MNAP +E F++ EG KK++ KDTK+ NA FTI +EDHT+GNI++ QL +DP V FAG Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60 Query: 364 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAF 498 YK+PHPL++KII+R+ T SP +A+T AI DL EL L++ F Sbjct: 61 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>RPO2J_HUMAN (P52435) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| (DNA-directed RNA polymerase II 13.3 kDa polypeptide) (RPB11) Length = 117 Score = 124 bits (311), Expect = 2e-28 Identities = 57/105 (54%), Positives = 77/105 (73%) Frame = +1 Query: 184 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 363 MNAP +E F++ EG KK++ KDTK+ NA FTI +EDHT+GNI++ QL +DP V FAG Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60 Query: 364 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAF 498 YK+PHPL++KII+R+ T SP +A+T AI DL EL L++ F Sbjct: 61 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>RPO2J_DROME (Q9VJE4) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| (DNA-directed RNA polymerase II 13.3 kDa polypeptide) (RPB11) Length = 117 Score = 122 bits (307), Expect = 5e-28 Identities = 57/107 (53%), Positives = 78/107 (72%) Frame = +1 Query: 184 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 363 MNAP +E F++ EG KK+ E DTK+ NAA FTI +EDHT+GN++R QL +DPNV FAG Sbjct: 1 MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAG 60 Query: 364 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFED 504 YK+PHPL++K ++RI T + SP +A+ AI DL EL ++ F+D Sbjct: 61 YKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFKD 107
>RPO2J_ANOGA (Q7PVQ9) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| Length = 117 Score = 120 bits (300), Expect = 3e-27 Identities = 56/107 (52%), Positives = 77/107 (71%) Frame = +1 Query: 184 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 363 MNAP +E F++ EG KK+ E D K+ NAA FT+ +EDHT+GN++R QL +DPNV FAG Sbjct: 1 MNAPPTFESFLLYEGEKKIIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAG 60 Query: 364 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFED 504 YKLPHPL++K ++RI T S+ SP +A+ AI DL EL ++ F + Sbjct: 61 YKLPHPLEHKFVLRIQTTSEYSPHEAFMNAITDLLSELSLFEERFRE 107
>RPO2J_CAEBR (Q60SM4) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 122 Score = 110 bits (276), Expect = 2e-24 Identities = 54/106 (50%), Positives = 76/106 (71%) Frame = +1 Query: 184 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 363 MNAP +E F++ + KK+ EKDTK+ NAA FTI +EDHT+GN+L++QL +DP V FAG Sbjct: 1 MNAPAAFESFLLLDD-KKIYIEKDTKVPNAAIFTINKEDHTLGNMLKIQLLKDPEVLFAG 59 Query: 364 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFE 501 YK PHPL++KI++R+ T + ++P A T AI DL EL L+ + Sbjct: 60 YKNPHPLEHKILLRVQTTNATTPADALTTAITDLVGELSLLEHRID 105
>RPO2J_CAEEL (Q9XVH6) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 122 Score = 109 bits (272), Expect = 6e-24 Identities = 55/106 (51%), Positives = 75/106 (70%) Frame = +1 Query: 184 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 363 MNAP +E F++ + KK EKDTK+ NAA FTI +EDHT+GN+L++QL +DP V FAG Sbjct: 1 MNAPAAFESFLLLDD-KKFYIEKDTKVPNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAG 59 Query: 364 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFE 501 YK PHPL++KI++RI T + ++P A T AI DL EL L+ + Sbjct: 60 YKNPHPLEHKILLRIQTTNNTTPADALTTAITDLVGELSLLEHRID 105
>RPB11_YEAST (P38902) DNA-directed RNA polymerase II 13.6 kDa polypeptide (EC| 2.7.7.6) (B13.6) Length = 120 Score = 92.8 bits (229), Expect = 5e-19 Identities = 47/108 (43%), Positives = 62/108 (57%) Frame = +1 Query: 184 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 363 MNAPDR+E F++ EG K+ + DTK NA T E+EDHT+GN++R +L D V FA Sbjct: 1 MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60 Query: 364 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDE 507 YK+ HP + +RI T P A A N + +L LK FE E Sbjct: 61 YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETE 108
>RPB11_SCHPO (P87123) DNA-directed RNA polymerase II 14.1 kDa polypeptide (EC| 2.7.7.6) Length = 123 Score = 92.4 bits (228), Expect = 7e-19 Identities = 49/108 (45%), Positives = 63/108 (58%) Frame = +1 Query: 184 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 363 MN P+RYE + G KV++E D+K NAA T+E+EDHT+ N+L QL D V FAG Sbjct: 1 MNQPERYE-LIELMGLPKVTYELDSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAG 59 Query: 364 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDE 507 YK+PHPL + I+R+ T SP Q A L LE +K F E Sbjct: 60 YKVPHPLNHNFILRVQTVEDCSPKQVIVDAAKSLITHLEEIKVNFMRE 107
>RPO2J_PLACH (Q4XS21) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 126 Score = 65.5 bits (158), Expect = 9e-11 Identities = 34/112 (30%), Positives = 61/112 (54%) Frame = +1 Query: 187 NAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGY 366 N P+ + V+P G +KV + K + FTI+ EDHTIGN+++ L +DP V FA Y Sbjct: 8 NKPENVDLLVLPHGEEKVKCQISDK-GDCNIFTIKLEDHTIGNLIKQSLCQDPKVTFAAY 66 Query: 367 KLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFE 522 + PHPLQ I + I + + + ++ + ++ L++ F + +++ Sbjct: 67 RQPHPLQNAIEITIRPKGYAG-VKLLSDNVHSILNQVSTLRETFANRVQKYK 117
>RPO2J_PLABA (Q4YZZ7) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 126 Score = 64.7 bits (156), Expect = 2e-10 Identities = 34/112 (30%), Positives = 62/112 (55%) Frame = +1 Query: 187 NAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGY 366 N P+ + V+P G +KV + K + FTI+ EDHTIGN+++ L +DP V FA Y Sbjct: 8 NKPENVDLLVLPHGEEKVKCQISDK-GDCNIFTIKLEDHTIGNLIKQSLCQDPKVTFAAY 66 Query: 367 KLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFE 522 + PHPLQ I + I + + + ++ + ++ L++ F ++ +++ Sbjct: 67 RQPHPLQNVIEITIRPKGYAG-VKLLSDNVHTILNQVSTLRETFVNKVQKYK 117
>RPO2J_PLAF7 (Q8IER7) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 126 Score = 63.5 bits (153), Expect = 4e-10 Identities = 36/112 (32%), Positives = 62/112 (55%) Frame = +1 Query: 187 NAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGY 366 N P+ + V+ G KKV+ K + F I+ EDHTIGN++++QL +DP V FA Y Sbjct: 8 NKPETVDLLVLAPGEKKVTCTISDK-GDCNIFVIKLEDHTIGNLIKIQLCQDPKVLFAAY 66 Query: 367 KLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFE 522 + PHPLQ I + I + + + +N++ ++ LK+ F + +++ Sbjct: 67 RQPHPLQNAIEITIKPKGYAG-VKLLSDNVNNILSQVATLKENFAKKIQKYK 117
>RPC19_SCHPO (Q09177) DNA-directed RNA polymerases I and III 14 kDa polypeptide| (EC 2.7.7.6) Length = 125 Score = 62.4 bits (150), Expect = 8e-10 Identities = 27/84 (32%), Positives = 49/84 (58%) Frame = +1 Query: 265 MNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAY 444 + + +F I++EDHT+GN LR + ++P V F GY +PHP + K+ RI TA ++ Sbjct: 32 LTSVTFQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVL 91 Query: 445 TQAINDLDKELENLKQAFEDEKTR 516 + ++DL + + + F ++ R Sbjct: 92 RKGLDDLIDLCDAVTEKFTEQLPR 115
>RPC19_YEAST (P28000) DNA-directed RNA polymerases I and III 16 kDa polypeptide| (EC 2.7.7.6) (AC19) Length = 142 Score = 60.5 bits (145), Expect = 3e-09 Identities = 26/65 (40%), Positives = 41/65 (63%) Frame = +1 Query: 271 AASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQ 450 +ASF I EDHT+GN LR + ++P+V F GY +PHP + + +RI T +++ A + Sbjct: 60 SASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQK 119 Query: 451 AINDL 465 + DL Sbjct: 120 GLKDL 124
>RPO1D_XENLA (Q5XK67) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)| Length = 114 Score = 59.7 bits (143), Expect = 5e-09 Identities = 26/89 (29%), Positives = 47/89 (52%) Frame = +1 Query: 268 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 447 + +F + EDHT+GN LR + ++P V F GY + HP + KI RI T + + + Sbjct: 22 SCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFRIQTRNGIPAVEPFR 81 Query: 448 QAINDLDKELENLKQAFEDEKTRFESMKQ 534 + +N+L +++ FE ++ K+ Sbjct: 82 RGLNELVDVCQHVLNTFETSIKEYKEQKE 110
>RPO1D_HUMAN (Q9Y2S0) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)| (DNA-directed RNA polymerase I 16 kDa polypeptide) (RPA16) Length = 133 Score = 57.8 bits (138), Expect = 2e-08 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 3/106 (2%) Frame = +1 Query: 223 EGTKKVSFEKDTKI---MNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYK 393 EG +K + E + +F + EDHT+GN LR + ++P V F GY HP + K Sbjct: 20 EGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESK 79 Query: 394 IIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFESMK 531 I +RI T + + + +N+L +++ FE ++ K Sbjct: 80 INLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKDYKDQK 125
>RPO1D_CAEEL (P34476) Probable DNA-directed RNA polymerase I subunit D (EC| 2.7.7.6) Length = 144 Score = 57.0 bits (136), Expect = 3e-08 Identities = 29/95 (30%), Positives = 49/95 (51%) Frame = +1 Query: 241 SFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTAS 420 SFE+D + + EDHTIGN ++ L R V F GY +PHPL+ KI+ R+ T Sbjct: 53 SFEQDPSNLTLIMY---EEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKD 109 Query: 421 QSSPTQAYTQAINDLDKELENLKQAFEDEKTRFES 525 + + +A +++ ++ FE+ + +S Sbjct: 110 GINALEVLAKAFESVEQIFSTIRGKFEESYEQSQS 144
>RPO1D_BRARE (Q6DRI4) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)| Length = 112 Score = 56.6 bits (135), Expect = 4e-08 Identities = 26/86 (30%), Positives = 44/86 (51%) Frame = +1 Query: 277 SFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAI 456 +F + EDHT+GN LR + + +V F GY + HP + KI RI T ++ + Sbjct: 24 TFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPASEPLRNGL 83 Query: 457 NDLDKELENLKQAFEDEKTRFESMKQ 534 N+L +++ Q FE F+ ++ Sbjct: 84 NNLTDVCKHVLQTFEARMKEFKEQEE 109
>RPOL_SULTO (Q96YA7) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 93 Score = 56.2 bits (134), Expect = 6e-08 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 4/78 (5%) Frame = +1 Query: 268 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 447 N I+ E+HT+GN+L+ L + P V FA Y PHPL II++I T SP +A Sbjct: 11 NYLELQIDGEEHTVGNLLKGYLLKVPGVKFASYSKPHPLIDSIILKIMTDGSISPKEALV 70 Query: 448 QAI----NDLDKELENLK 489 +AI D +K +E +K Sbjct: 71 KAIELAEEDTNKFIEEVK 88
>RPO1D_CAEBR (Q61IX2) Probable DNA-directed RNA polymerase I subunit D (EC| 2.7.7.6) Length = 145 Score = 56.2 bits (134), Expect = 6e-08 Identities = 33/95 (34%), Positives = 50/95 (52%) Frame = +1 Query: 241 SFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTAS 420 SFE+D + + + EDHTIGN ++ L R V F GY +PHPL+ KI+ R+ T Sbjct: 54 SFEQDPSNL---TLILYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKD 110 Query: 421 QSSPTQAYTQAINDLDKELENLKQAFEDEKTRFES 525 A+ L K E+++Q F + +FE+ Sbjct: 111 G-------INALEVLVKAFESVEQVFSTIRGKFEA 138
>RPO1D_MOUSE (P97304) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)| (DNA-directed RNA polymerase I 16 kDa polypeptide) (RPA16) Length = 133 Score = 55.8 bits (133), Expect = 7e-08 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 7/111 (6%) Frame = +1 Query: 223 EGTKKVSFEKDTKI---MNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYK 393 EG +K + E +F + EDHT+GN LR + ++P V F GY HP + K Sbjct: 20 EGERKTALEMVQAAGTDRQCVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPSESK 79 Query: 394 IIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFE----DEKTRFESMKQ 534 I +RI T + + + +N+L +++ FE D K + S K+ Sbjct: 80 INLRIQTRGALPAVEPFQKGLNELLNVCQHVLVKFEASIKDYKAKKASKKE 130
>RPOL_SULSO (Q980K0) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 92 Score = 55.5 bits (132), Expect = 1e-07 Identities = 29/66 (43%), Positives = 37/66 (56%) Frame = +1 Query: 268 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 447 N IE EDHT+GN++ L R V FA Y PHPL KIIV+I T +P A Sbjct: 11 NYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALL 70 Query: 448 QAINDL 465 +AI ++ Sbjct: 71 KAIENI 76
>RPOL_SULAC (P46217) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 90 Score = 53.9 bits (128), Expect = 3e-07 Identities = 32/80 (40%), Positives = 42/80 (52%) Frame = +1 Query: 268 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 447 N I+ E+HTIGN+L+ L + P V FA Y LPHPL I ++I T S +A Sbjct: 11 NYLELQIDGEEHTIGNLLKGMLLKVPGVKFAAYSLPHPLITSITIKILTDGSISAREALI 70 Query: 448 QAINDLDKELENLKQAFEDE 507 +AI + EN F DE Sbjct: 71 KAI----ELAENYANLFIDE 86
>RPO1D_DROME (Q9VIZ0) Probable DNA-directed RNA polymerase I subunit D (EC| 2.7.7.6) Length = 105 Score = 52.4 bits (124), Expect = 8e-07 Identities = 27/85 (31%), Positives = 42/85 (49%) Frame = +1 Query: 277 SFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAI 456 +F E HT+GN L+ + R P V F GY +PHP + K+ RI + + + + Sbjct: 19 TFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQ-SRRDRAIDILKRGL 77 Query: 457 NDLDKELENLKQAFEDEKTRFESMK 531 DL+ ++ FE E F +MK Sbjct: 78 EDLEGLCDHTIVTFEKEMAEFNAMK 102
>RPOL_PYRFU (Q8U4N1) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 95 Score = 45.4 bits (106), Expect = 1e-04 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%) Frame = +1 Query: 268 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQY--KIIVRIHTASQSSPTQA 441 N F +E EDHT N+L L +P+V F Y + HP+ K R+ T + +P +A Sbjct: 11 NLLEFYLEGEDHTFANLLVETLRENPHVKFTAYTIEHPITMARKPRFRVVTDGEITPEEA 70 Query: 442 YTQAINDLDKELENLKQAFE 501 +A + + + + +A+E Sbjct: 71 LEEAAKKIFERAKEVLEAWE 90
>RPOL_PYRKO (Q5JE88) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 94 Score = 45.1 bits (105), Expect = 1e-04 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%) Frame = +1 Query: 268 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQY--KIIVRIHTASQSSPTQA 441 N F +E EDHT N+L LH + +V FAGY + HP+ K ++ T + +P +A Sbjct: 11 NLLEFYLEGEDHTFANLLTETLHENEHVTFAGYTIEHPITMARKPRFKVVTDGKITPEKA 70 Query: 442 YTQAINDLDKELENLKQAFE 501 +A + + +A++ Sbjct: 71 LEEAAQKIFDRAREVLEAWK 90
>RPOL_PYRHO (P57671) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 95 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Frame = +1 Query: 280 FTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQY--KIIVRIHTASQSSPTQAYTQA 453 F +E EDHT N+L L DP+V F Y + HP+ K R+ T + +P +A +A Sbjct: 15 FYLEGEDHTFANLLTEVLREDPHVKFVAYTIEHPITMARKPRFRVVTDGKVTPEKALEEA 74 Query: 454 INDLDKELENLKQAFE 501 + + + A+E Sbjct: 75 ARKIFNRAKEVLDAWE 90
>RPOL_PYRAB (Q9V2M4) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 95 Score = 42.4 bits (98), Expect = 8e-04 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%) Frame = +1 Query: 259 KIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHP--LQYKIIVRIHTASQSSP 432 K + F +E EDHT N+L L +P+V F Y + HP + K R+ T + +P Sbjct: 8 KEQDLLEFYLEGEDHTFANLLTETLRENPHVKFVAYTIEHPILMARKPRFRVVTDGKITP 67 Query: 433 TQAYTQAINDLDKELENLKQAFE 501 +A +A + + + A+E Sbjct: 68 EKALEEAAKKIFDRAKEVLDAWE 90
>RPOL_THEAC (Q9HIC5) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 111 Score = 37.4 bits (85), Expect = 0.027 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 2/103 (1%) Frame = +1 Query: 223 EGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPL--QYKI 396 E T + S +K N+ + + D+T+ L ++ +D V A Y + HP+ +I Sbjct: 4 ERTAESSLRVISKEKNSITVEMINYDNTLLRTLVEEILKDDQVDEARYYIKHPVIDNPQI 63 Query: 397 IVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFES 525 VR+ P A +A+ L K E+L F+ E R+ES Sbjct: 64 YVRV---KSGKPQSAIKRAVRKLSKLYEDLGTQFQKEFQRYES 103
>RPOL_PYRAE (Q8ZW46) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 92 Score = 37.4 bits (85), Expect = 0.027 Identities = 19/68 (27%), Positives = 37/68 (54%) Frame = +1 Query: 295 EDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKE 474 E +T+ + L L DP+V + + + HPLQ ++ + +P +A +A+N + + Sbjct: 24 ETYTLFSPLVEYLSNDPDVEYVQFDVDHPLQENAYFKL-KVKRGNPLEAIQRAVNAILSD 82 Query: 475 LENLKQAF 498 LE L++ F Sbjct: 83 LEELERGF 90
>RPOL_METTH (O27372) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 85 Score = 37.0 bits (84), Expect = 0.035 Identities = 21/73 (28%), Positives = 30/73 (41%) Frame = +1 Query: 268 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 447 N E E HT+ N+LR L D V A Y + HP+ + + I S +A Sbjct: 9 NEMEIVFEGETHTLCNVLRSILMEDEKVKAAAYSIDHPIVGEPQLYIRAGSPKKSLKAAA 68 Query: 448 QAINDLDKELENL 486 + + D E L Sbjct: 69 ETLRDRCDEFRRL 81
>RPOL_METKA (Q8TZ81) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 112 Score = 33.5 bits (75), Expect = 0.39 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 9/84 (10%) Frame = +1 Query: 295 EDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSS--PTQAYTQAIND-- 462 EDHT+ N+LR L+R + A Y++ HP I+ + H + P + +A+++ Sbjct: 25 EDHTLCNLLRWALNRQDGI-IATYRIEHP----ILGKEHKVDEERYVPPKMRIRAVDEDA 79 Query: 463 -----LDKELENLKQAFEDEKTRF 519 L++ +E L + E+ K F Sbjct: 80 DAREALERAIEELLELVEEAKEEF 103
>RPOL_METJA (Q57832) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 99 Score = 33.1 bits (74), Expect = 0.51 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 8/89 (8%) Frame = +1 Query: 268 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKII--------VRIHTASQ 423 N + EDH++ N+L+ L V A Y + HPL + + I T Sbjct: 11 NLVEIELINEDHSLPNLLKDILLTKEGVKMASYSIDHPLLHPETGRYISNPKITIITEEG 70 Query: 424 SSPTQAYTQAINDLDKELENLKQAFEDEK 510 + P + + + D+ K + L +++K Sbjct: 71 TDPLEVLKEGLRDIIKMCDTLLDELKEKK 99
>RPOL_NANEQ (Q74MN9) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 96 Score = 32.3 bits (72), Expect = 0.87 Identities = 22/74 (29%), Positives = 30/74 (40%) Frame = +1 Query: 268 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 447 N + E HT+ N L+ + V A Y + HPL+ I T A Sbjct: 16 NLIKVQFKGETHTLFNALKEIAYTINGVKKAAYFIEHPLKDNNYFIIETDGSIKARDALI 75 Query: 448 QAINDLDKELENLK 489 QA+ L +EL N K Sbjct: 76 QALKKLKEELLNFK 89
>CND1_HUMAN (Q15021) Condensin complex subunit 1 (Chromosome condensation-related| SMC-associated protein 1) (Chromosome-associated protein D2) (hCAP-D2) (XCAP-D2 homolog) Length = 1401 Score = 32.0 bits (71), Expect = 1.1 Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 9/116 (7%) Frame = -1 Query: 326 MRRMLPMVWSSRSIVKDAAFMIFVSFSKDTFFVPSGTTKRS*RSGAFISNQHL------- 168 +RRMLP++WS V++A + + + P G + R+ ++ A I N L Sbjct: 675 VRRMLPLIWSKEPGVREAVLNAY----RQLYLNPKGDSARA-KAQALIQNLSLLLVDASV 729 Query: 167 -APSCLLYCGCRSSSKPLQLAMLMPCLWTARRRCWARAPAQG-REAMLVGTAARGR 6 CL C K + LW A P + ML+G ARG+ Sbjct: 730 GTIQCLEEILCEFVQKDELKPAVTQLLWERATEKVACCPLERCSSVMLLGMMARGK 785
>RPOL_ARCFU (O30032) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 86 Score = 31.6 bits (70), Expect = 1.5 Identities = 21/56 (37%), Positives = 30/56 (53%) Frame = +1 Query: 286 IEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQA 453 I+ E HT N+L+ L D +V A Y +PHPL + + I T S P +A +A Sbjct: 17 IKGEGHTYLNLLQHYLVEDEDVIVARYNIPHPLIGEPEIYIKT-SGVDPLEAVKRA 71
>INT1_MOUSE (Q6P4S8) Integrator complex subunit 1 (Int1)| Length = 2126 Score = 31.6 bits (70), Expect = 1.5 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%) Frame = -3 Query: 243 GHLLCALRHDEALIAV--RGIHLQSTPGSFLFALLWMPEQLQAPPIGNVDALPMDCSAA- 73 GHLLC R+ + L+ + R QS P W+ + +Q+ G++D LP+ C Sbjct: 869 GHLLCRSRNPDFLLHIIQRQASSQSMP--------WLADLVQSSE-GSLDVLPVQCLCEF 919 Query: 72 LLGESACSREGGDAGGNG 19 LL ++A S G+ G Sbjct: 920 LLHDAADSTASGEEDDEG 937
>KINH_STRPU (P35978) Kinesin heavy chain| Length = 1031 Score = 31.6 bits (70), Expect = 1.5 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%) Frame = +2 Query: 2 PPSHGQPFPPASPPSLEQALSPS---NAAEQSIGRASTLPIGG 121 PPSHG P P + S E++L+P+ N +++ R LP GG Sbjct: 954 PPSHGSPEPISHNNSFEKSLNPNDAENMEKKANKRLPKLPPGG 996
>TDRD6_HUMAN (O60522) Tudor domain-containing protein 6 (Colon cancer antigen| NY-CO-45) (Fragment) Length = 753 Score = 31.2 bits (69), Expect = 1.9 Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 8/111 (7%) Frame = -3 Query: 342 VPVQLHAEDVADGVVFTFNCERCS-IHDLCILL---EGHLLCALRH---DEALIAVRGIH 184 V VQ E VAD NC C I D CI+ +GH AL ++ L++VR + Sbjct: 279 VEVQTAGEQVAD----RRNCIPCPYIGDPCIVRYREDGHYYRALITNICEDYLVSVRLVD 334 Query: 183 LQSTPGSFLFALLW-MPEQLQAPPIGNVDALPMDCSAALLGESACSREGGD 34 + LW +P +L + P+ A P S + E CS+EG D Sbjct: 335 FGNIEDCVDPKALWAIPSELLSVPM---QAFPCCLSGFNISEGLCSQEGND 382
>DUR1_YEAST (P32528) Urea amidolyase [Includes: Urea carboxylase (EC 6.3.4.6);| Allophanate hydrolase (EC 3.5.1.54)] Length = 1835 Score = 31.2 bits (69), Expect = 1.9 Identities = 29/108 (26%), Positives = 45/108 (41%) Frame = +1 Query: 190 APDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYK 369 A DRY +V G +++F +I ++ +++ TIG + Q R + F GYK Sbjct: 1441 AGDRY--VLVEYGDNEMNFNISYRI--ECLISLVKKNKTIGIVEMSQGVRSVLIEFDGYK 1496 Query: 370 LPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKT 513 + K++V T Q T + L AFED KT Sbjct: 1497 VTQKELLKVLVAYETEIQFDENWKIT-------SNIIRLPMAFEDSKT 1537
>DDEF1_MOUSE (Q9QWY8) 130-kDa phosphatidylinositol 4,5-biphosphate-dependent| ARF1 GTPase-activating protein (PIP2-dependent ARF1 GAP) (ADP-ribosylation factor-directed GTPase-activating protein 1) (ARF GTPase-activating protein 1) (Development and differe Length = 1147 Score = 31.2 bits (69), Expect = 1.9 Identities = 19/47 (40%), Positives = 24/47 (51%) Frame = +2 Query: 29 PASPPSLEQALSPSNAAEQSIGRASTLPIGGAWSCSGIHSRANKKEP 169 P SP S L P NA + G STLP+G S SG + + K+ P Sbjct: 798 PTSPTSEAPPLPPRNAGKGPTGPPSTLPLGTQTS-SGSSTLSKKRPP 843
>RPOL_THEVO (Q978F5) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 111 Score = 30.8 bits (68), Expect = 2.5 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 2/98 (2%) Frame = +1 Query: 238 VSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPL--QYKIIVRIH 411 VS EKD+ I+ ++ D+T+ L ++ +D V A Y + HP+ +I V++ Sbjct: 14 VSKEKDSIIVEMINY-----DNTLLRTLVEEILKDDQVIEARYYIKHPIIDNPQIYVKV- 67 Query: 412 TASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFES 525 P A ++I L K E+L E E ++ S Sbjct: 68 --KSGKPQAAIKRSIRKLSKLYEDLGAQVEKEIEKYRS 103
>CND1_MOUSE (Q8K2Z4) Condensin complex subunit 1 (Chromosome| condensation-related SMC-associated protein 1) (Chromosome-associated protein D2) (mCAP-D2) (XCAP-D2 homolog) Length = 1392 Score = 30.8 bits (68), Expect = 2.5 Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 12/119 (10%) Frame = -1 Query: 326 MRRMLPMVWSSRSIVKDAAFMIFVSFSKDTFFVPSGTTKRS*RSGAFISNQHL------- 168 +RRMLP++WS V++A + + + P G + R+ ++ I N L Sbjct: 665 VRRMLPLIWSKEPGVREAVLNAY----RQLYLNPKGDSARA-KAQTLIHNLSLLLVDASV 719 Query: 167 -APSCLLYCGCRSSSKPLQLAMLMPCLWTARRRCWARAPAQGRE----AMLVGTAARGR 6 CL C K ++ LW R + P+ E ML+G ARG+ Sbjct: 720 GTIQCLEEILCEFVQKDEVKPAVIQLLW---ERATEKVPSSPLERCSSVMLLGMMARGK 775
>CI010_HUMAN (Q9NZB2) Protein C9orf10| Length = 1069 Score = 30.4 bits (67), Expect = 3.3 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 3/80 (3%) Frame = -3 Query: 237 LLCALRHDEALIAVRGIHLQSTPGSFLFAL---LWMPEQLQAPPIGNVDALPMDCSAALL 67 L C LR+ R + Q AL L+ P+QLQ I N+D + SA + Sbjct: 715 LCCVLRYMVQWPGARILRRQELDAFLAQALSPKLYEPDQLQELKIENLDPRGIQLSALFM 774 Query: 66 GESACSREGGDAGGNGCPWE 7 + DA G PWE Sbjct: 775 SGVDMALFANDACGQPIPWE 794
>INT1_HUMAN (Q8N201) Integrator complex subunit 1 (Int1)| Length = 2190 Score = 30.0 bits (66), Expect = 4.3 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 6/78 (7%) Frame = -3 Query: 243 GHLLCALRHDEALIAV--RGIHLQSTPGSFLFALLWMPEQLQAPPIGNVDALPMDCSAAL 70 GHLLC R+ + L+ + R QS P W+ + +Q+ G++D LP+ C Sbjct: 863 GHLLCRSRNPDFLLHIIQRQASSQSMP--------WLADLVQSSE-GSLDVLPVQCLCEF 913 Query: 69 L----GESACSREGGDAG 28 L + A S E D G Sbjct: 914 LLHDAVDDAASGEEDDEG 931
>CD2L7_HUMAN (Q9NYV4) Cell division cycle 2-related protein kinase 7 (EC| 2.7.11.22) (CDC2-related protein kinase 7) (Cdc2-related kinase, arginine/serine-rich) (CrkRS) Length = 1490 Score = 30.0 bits (66), Expect = 4.3 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 5/61 (8%) Frame = +2 Query: 2 PPSHGQPFPPASP-PSLEQA--LSPSNAAEQSI--GRASTLPIGGAWSCSGIHSRANKKE 166 PP P PP P P+L Q L PS A + STLP S + S+AN + Sbjct: 544 PPPQTPPLPPLPPIPALPQQPPLPPSQPAFSQVPASSTSTLPPSTHSKTSAVSSQANSQP 603 Query: 167 P 169 P Sbjct: 604 P 604
>THYX_PYRHO (O58498) Thymidylate synthase thyX (EC 2.1.1.148) (TS) (TSase)| Length = 243 Score = 30.0 bits (66), Expect = 4.3 Identities = 22/95 (23%), Positives = 48/95 (50%) Frame = +1 Query: 127 ELLRHPQ*SKQEGARC*LEMNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHT 306 +L+RH S + ++ +++N D E FV+PE S +KD++++ ++R Sbjct: 77 QLVRHRIASYTQQSQRYIKINPEDVEETFVIPE-----SIKKDSELLKEWKELLKRSLEL 131 Query: 307 IGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIH 411 + +H++ A + LP ++ KI+V ++ Sbjct: 132 YEKSIERGIHQED----ARFILPQSVKTKIVVTMN 162
>ENV_VILV2 (P23423) Env polyprotein (Coat polyprotein) [Contains: Leader| peptide; Exterior membrane glycoprotein; Transmembrane glycoprotein] Length = 991 Score = 29.6 bits (65), Expect = 5.6 Identities = 28/106 (26%), Positives = 40/106 (37%) Frame = -3 Query: 357 KVNIWVPVQLHAEDVADGVVFTFNCERCSIHDLCILLEGHLLCALRHDEALIAVRGIHLQ 178 KVNIW P + V GV++ L I+L G L+ +R A I L Sbjct: 68 KVNIWEPCEKWFAQVVWGVLWV----------LQIVLWGCLMWEMRKGNQCQAEEVIALV 117 Query: 177 STPGSFLFALLWMPEQLQAPPIGNVDALPMDCSAALLGESACSREG 40 S PG F + +V+ +P+ C + C EG Sbjct: 118 SDPGGF-------------QRVQHVETVPVTCVTKNFTQWGCQPEG 150
>TSGA_SALTY (Q8ZLK7) Protein tsgA| Length = 393 Score = 29.6 bits (65), Expect = 5.6 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = -1 Query: 449 WVYACVGEDWLAVWILT 399 WVYAC+G +LA++ILT Sbjct: 164 WVYACIGLVYLAIFILT 180
>TSGA_SALTI (Q8Z1Z8) Protein tsgA| Length = 393 Score = 29.6 bits (65), Expect = 5.6 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = -1 Query: 449 WVYACVGEDWLAVWILT 399 WVYAC+G +LA++ILT Sbjct: 164 WVYACIGLVYLAIFILT 180
>TSGA_SALPA (Q5PLW2) Protein tsgA| Length = 393 Score = 29.6 bits (65), Expect = 5.6 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = -1 Query: 449 WVYACVGEDWLAVWILT 399 WVYAC+G +LA++ILT Sbjct: 164 WVYACIGLVYLAIFILT 180
>TSGA_SALCH (Q57J00) Protein tsgA| Length = 393 Score = 29.6 bits (65), Expect = 5.6 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = -1 Query: 449 WVYACVGEDWLAVWILT 399 WVYAC+G +LA++ILT Sbjct: 164 WVYACIGLVYLAIFILT 180
>DMBT1_HUMAN (Q9UGM3) Deleted in malignant brain tumors 1 protein precursor| (Glycoprotein 340) (Gp-340) (Surfactant pulmonary-associated D-binding protein) Length = 2413 Score = 29.6 bits (65), Expect = 5.6 Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 15/84 (17%) Frame = -2 Query: 238 PSLCPQARRSAHSGQGHSSPINTWLL----------LVCSTVDAGAAPSPSNWQC*CPAY 89 P + R S H S P N WL ++CS + PSP W Sbjct: 1441 PIVLDDVRCSGHESYLWSCPHNGWLSHNCGHHEDAGVICSASQSQPTPSPDTWPT----- 1495 Query: 88 GLLGGVAGRE-----RLLKGGRRC 32 AG E RL+ GG RC Sbjct: 1496 -SRASTAGSESTLALRLVNGGDRC 1518 Score = 29.3 bits (64), Expect = 7.4 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 11/80 (13%) Frame = -2 Query: 238 PSLCPQARRSAHSGQGHSSPINTWLL----------LVCSTVDAGAAPSPSNW-QC*CPA 92 P + R S H S P N WL ++CS + + P P W PA Sbjct: 1570 PIVLDDVRCSGHESYLWSCPHNGWLSHNCGHHEDAGVICSAAQSQSTPRPDTWLTTNLPA 1629 Query: 91 YGLLGGVAGRERLLKGGRRC 32 + + RL+ GG RC Sbjct: 1630 LTVGSESSLALRLVNGGDRC 1649 Score = 29.3 bits (64), Expect = 7.4 Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 15/84 (17%) Frame = -2 Query: 238 PSLCPQARRSAHSGQGHSSPINTWLL----------LVCSTVDAGAAPSPSNWQC*CPAY 89 P + R S H S P N WL ++CS + PSP W Sbjct: 1312 PIVLDDVRCSGHESYLWSCPHNGWLSHNCGHHEDAGVICSASQSQPTPSPDTWPT----- 1366 Query: 88 GLLGGVAGRE-----RLLKGGRRC 32 AG E RL+ GG RC Sbjct: 1367 -SHASTAGSESSLALRLVNGGDRC 1389 Score = 29.3 bits (64), Expect = 7.4 Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 15/84 (17%) Frame = -2 Query: 238 PSLCPQARRSAHSGQGHSSPINTWLL----------LVCSTVDAGAAPSPSNWQC*CPAY 89 P + R S H S P N WL ++CS + PSP W Sbjct: 1183 PIVLDDVRCSGHESYLWSCPHNGWLSHNCGHHEDAGVICSASQSQPTPSPDTWPT----- 1237 Query: 88 GLLGGVAGRE-----RLLKGGRRC 32 AG E RL+ GG RC Sbjct: 1238 -SHASTAGSESSLALRLVNGGDRC 1260 Score = 29.3 bits (64), Expect = 7.4 Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 15/84 (17%) Frame = -2 Query: 238 PSLCPQARRSAHSGQGHSSPINTWLL----------LVCSTVDAGAAPSPSNWQC*CPAY 89 P + R S H S P N WL ++CS + PSP W Sbjct: 1054 PIVLDDVRCSGHESYLWSCPHNGWLSHNCGHSEDAGVICSASQSRPTPSPDTWPT----- 1108 Query: 88 GLLGGVAGRE-----RLLKGGRRC 32 AG E RL+ GG RC Sbjct: 1109 -SHASTAGSESSLALRLVNGGDRC 1131 Score = 29.3 bits (64), Expect = 7.4 Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 15/84 (17%) Frame = -2 Query: 238 PSLCPQARRSAHSGQGHSSPINTWLL----------LVCSTVDAGAAPSPSNWQC*CPAY 89 P + R S H S P N WL ++CS + PSP W Sbjct: 295 PIVLDDVRCSGHESYLWSCPHNGWLTHNCGHSEDAGVICSAPQSRPTPSPDTWPT----- 349 Query: 88 GLLGGVAGRE-----RLLKGGRRC 32 AG E RL+ GG RC Sbjct: 350 -SHASTAGPESSLALRLVNGGDRC 372 Score = 28.9 bits (63), Expect = 9.6 Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 15/84 (17%) Frame = -2 Query: 238 PSLCPQARRSAHSGQGHSSPINTWLL----------LVCSTVDAGAAPSPSNWQC*CPAY 89 P + R S H S P N WL ++CS + PSP W Sbjct: 794 PIVLDDVRCSGHESYLWSCPHNGWLSHNCGHHEDAGVICSVSQSRPTPSPDTWPT----- 848 Query: 88 GLLGGVAGRE-----RLLKGGRRC 32 AG E RL+ GG RC Sbjct: 849 -SHASTAGPESSLALRLVNGGDRC 871
>YFEB_YERPE (Q56953) Chelated iron transport system membrane protein yfeB| Length = 296 Score = 29.3 bits (64), Expect = 7.4 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -3 Query: 339 PVQLHAEDVADGVVFTFNCERCSIHDLCILLEGHLLCAL 223 PV + E V D V T+N +I+D L G +CAL Sbjct: 4 PVFVRPELVVDNVTVTYNNGHTAIYDASFSLTGGTICAL 42
>ENV_VILVK (P35954) Env polyprotein (Coat polyprotein) [Contains: Leader| peptide; Exterior membrane glycoprotein; Transmembrane glycoprotein] Length = 983 Score = 29.3 bits (64), Expect = 7.4 Identities = 28/106 (26%), Positives = 40/106 (37%) Frame = -3 Query: 357 KVNIWVPVQLHAEDVADGVVFTFNCERCSIHDLCILLEGHLLCALRHDEALIAVRGIHLQ 178 KVNIW P + V GV++ L I+L G L+ +R A I L Sbjct: 68 KVNIWEPCEKWFAQVVWGVLWV----------LQIVLWGCLMWEVRKGNQCQAEEVIALV 117 Query: 177 STPGSFLFALLWMPEQLQAPPIGNVDALPMDCSAALLGESACSREG 40 S PG F + +V+ +P+ C + C EG Sbjct: 118 SDPGGF-------------QRVQHVETVPVTCVTKNFTQWGCQPEG 150
>CCHCR_PONPY (Q8HZ58) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 29.3 bits (64), Expect = 7.4 Identities = 13/40 (32%), Positives = 24/40 (60%) Frame = +1 Query: 397 IVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTR 516 + R+H SS TQA+ +A++ L + E L+++ +TR Sbjct: 171 VQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETR 210
>CCHCR_PANTR (Q8HZ60) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 29.3 bits (64), Expect = 7.4 Identities = 13/40 (32%), Positives = 24/40 (60%) Frame = +1 Query: 397 IVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTR 516 + R+H SS TQA+ +A++ L + E L+++ +TR Sbjct: 171 VQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETR 210
>CCHCR_PANPA (Q8HZ57) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 29.3 bits (64), Expect = 7.4 Identities = 13/40 (32%), Positives = 24/40 (60%) Frame = +1 Query: 397 IVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTR 516 + R+H SS TQA+ +A++ L + E L+++ +TR Sbjct: 171 VQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETR 210
>CCHCR_HUMAN (Q8TD31) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) (Putative gene 8 protein) (Pg8) Length = 782 Score = 29.3 bits (64), Expect = 7.4 Identities = 13/40 (32%), Positives = 24/40 (60%) Frame = +1 Query: 397 IVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTR 516 + R+H SS TQA+ +A++ L + E L+++ +TR Sbjct: 171 VQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETR 210
>CCHCR_GORGO (Q8HZ59) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 29.3 bits (64), Expect = 7.4 Identities = 13/40 (32%), Positives = 24/40 (60%) Frame = +1 Query: 397 IVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTR 516 + R+H SS TQA+ +A++ L + E L+++ +TR Sbjct: 171 VQRLHQEQLSSLTQAHKEALSSLTSKAEGLEKSLSSLETR 210
>ENV_VILV1 (P23422) Env polyprotein (Coat polyprotein) [Contains: Leader| peptide; Exterior membrane glycoprotein; Transmembrane glycoprotein] Length = 989 Score = 29.3 bits (64), Expect = 7.4 Identities = 28/106 (26%), Positives = 40/106 (37%) Frame = -3 Query: 357 KVNIWVPVQLHAEDVADGVVFTFNCERCSIHDLCILLEGHLLCALRHDEALIAVRGIHLQ 178 KVNIW P + V GV++ L I+L G L+ +R A I L Sbjct: 68 KVNIWEPCEKWFAQVIWGVLWV----------LQIVLWGCLMWEMRKGNQCQAEEVIALV 117 Query: 177 STPGSFLFALLWMPEQLQAPPIGNVDALPMDCSAALLGESACSREG 40 S PG F + +V+ +P+ C + C EG Sbjct: 118 SDPGGF-------------QRVQHVETVPVTCVTKNFTQWGCQPEG 150
>ENV_VILV (P03379) Env polyprotein (Coat polyprotein) [Contains: Leader| peptide; Exterior membrane glycoprotein; Transmembrane glycoprotein] Length = 982 Score = 29.3 bits (64), Expect = 7.4 Identities = 28/106 (26%), Positives = 40/106 (37%) Frame = -3 Query: 357 KVNIWVPVQLHAEDVADGVVFTFNCERCSIHDLCILLEGHLLCALRHDEALIAVRGIHLQ 178 KVNIW P + V GV++ L I+L G L+ +R A I L Sbjct: 68 KVNIWEPCEKWFAQVVWGVLWV----------LQIVLWGCLMWEVRKGNQCQAEEVIALV 117 Query: 177 STPGSFLFALLWMPEQLQAPPIGNVDALPMDCSAALLGESACSREG 40 S PG F + +V+ +P+ C + C EG Sbjct: 118 SDPGGF-------------QRVQHVETVPVTCVTKNFTQWGCQPEG 150
>ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain protein)| (Ataxin-2-related protein) Length = 1075 Score = 29.3 bits (64), Expect = 7.4 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%) Frame = +2 Query: 2 PPSHGQPFPPASPPSLEQALSPSNAAEQSIGRA-----STLPIGGAWSCSGIHS 148 PP+ G+ +PP SP S A ++ E IG A +++P+ + S G+ S Sbjct: 438 PPAVGRMYPPRSPKSAAPAPISASCPEPPIGSAVPTSSASIPVTSSVSDPGVGS 491
>PDZK3_HUMAN (O15018) PDZ domain-containing protein 3 (PDZ domain-containing| protein 2) (Activated in prostate cancer protein) Length = 2839 Score = 28.9 bits (63), Expect = 9.6 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = -3 Query: 279 RCSIHDLCILLEGHLLCALRHDEALIAVR 193 R S+ D +++ GHLL L H+EA+ +R Sbjct: 377 RLSLGDELLVINGHLLVGLSHEEAVAILR 405
>GAG_FSVGA (P03337) Gag polyprotein [Contains: Core protein p15; Core protein| p12; Core protein p30] Length = 425 Score = 28.9 bits (63), Expect = 9.6 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Frame = +2 Query: 2 PPSHGQPF--PPASPPSLEQALSPSNAAEQSIGRASTLP 112 PPS +PF PP P SL Q LSP +A + LP Sbjct: 170 PPSWVRPFLPPPKPPTSLPQPLSPQPSAPLTSSLYPVLP 208
>PFD4_YEAST (P53900) Prefoldin subunit 4| Length = 129 Score = 28.9 bits (63), Expect = 9.6 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 8/114 (7%) Frame = +1 Query: 214 VVPEGTK---KVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHR-----DPNVHFAGYK 369 ++P+G + +V+FE KI N S I R+D I L +Q D ++ Sbjct: 3 LLPQGQRNNTQVTFEDQQKI-NEFSKLIMRKD-AIAQELSLQREEKEYLDDVSLEIELID 60 Query: 370 LPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFESMK 531 P+QYK+ QS T + LD ++E L+ D +R +++K Sbjct: 61 EDEPVQYKVGDLFIFMKQSKVTAQLEKDAERLDNKIETLEDKQRDIDSRLDALK 114
>PDE1_SCHPO (P36599) 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17)| (PDEase) Length = 346 Score = 28.9 bits (63), Expect = 9.6 Identities = 14/53 (26%), Positives = 27/53 (50%) Frame = -3 Query: 408 DPNNDLVLKGVRQLIASKVNIWVPVQLHAEDVADGVVFTFNCERCSIHDLCIL 250 +P N + + LIA + + ++ D+ D ++F C R +++LCIL Sbjct: 231 EPLNIHIWRACSSLIAQRKLSHILIECSTPDIPDTLLFGHFCPRHLVNELCIL 283
>PRRT1_MOUSE (O35449) Proline-rich transmembrane protein 1| Length = 306 Score = 28.9 bits (63), Expect = 9.6 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = +2 Query: 2 PPSHGQPFPPASPPSLEQALSPSNAAEQSIGRASTLPIGG 121 PP+ P PPA P+ A +P G TLP+GG Sbjct: 126 PPAAAAPPPPAPAPT---AQAPGFVVPTHAGAVGTLPLGG 162
>TIG_BACSU (P80698) Trigger factor (TF) (Vegetative protein 2) (VEG2)| Length = 423 Score = 28.9 bits (63), Expect = 9.6 Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 3/114 (2%) Frame = +1 Query: 202 YERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHP 381 +E FV E + E + + + SF ED +G L +D V F Sbjct: 169 FEGFVDGEAFEGGKAENYSLEVGSGSFIPGFEDQLVG--LEAGAEKDVEVTFPEEYHAED 226 Query: 382 LQYK---IIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEDEKTRFESMKQ 534 L K V+IH + + D+D+E+E L + E K R E K+ Sbjct: 227 LAGKPAVFKVKIHEIKAKELPELDDEFAKDIDEEVETLAELTEKTKKRLEEAKE 280
>PROC_MOUSE (P33587) Vitamin K-dependent protein C precursor (EC 3.4.21.69)| (Autoprothrombin IIA) (Anticoagulant protein C) (Blood coagulation factor XIV) [Contains: Vitamin K-dependent protein C light chain; Vitamin K-dependent protein C heavy chain; Act Length = 460 Score = 28.9 bits (63), Expect = 9.6 Identities = 13/36 (36%), Positives = 16/36 (44%) Frame = -2 Query: 409 GS*Q*SCTEGGEAAYSQQSEHLGPCATACGGCCRWC 302 GS SC +G E + QQ C GGC +C Sbjct: 115 GSFSCSCDKGWEGKFCQQELRFQDCRVNNGGCLHYC 150
>CP8B1_MOUSE (O88962) Cytochrome P450 8B1 (EC 1.14.13.95) (CYPVIIIB1)| (7-alpha-hydroxycholest-4-en-3-one 12-alpha-hydroxylase) (Sterol 12-alpha-hydroxylase) (7-alpha-hydroxy-4-cholesten-3-one 12-alpha-hydroxylase) Length = 500 Score = 28.9 bits (63), Expect = 9.6 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 199 RYERFVVPEGTKKVSFEKDTK 261 +Y+RF+ P+GT+KV F K K Sbjct: 403 KYDRFLNPDGTRKVDFYKSGK 423
>PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-containing| protein 2) (Plakophilin-related armadillo repeat protein-interacting PDZ protein) Length = 2766 Score = 28.9 bits (63), Expect = 9.6 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = -3 Query: 279 RCSIHDLCILLEGHLLCALRHDEALIAVR 193 R S+ D +++ GHLL L H+EA+ +R Sbjct: 377 RLSLGDELLVINGHLLVGLSHEEAVAILR 405
>DTN1_CAEEL (Q9Y048) Dystrobrevin-1| Length = 590 Score = 28.9 bits (63), Expect = 9.6 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -3 Query: 366 IASKVNIWVPVQLHAEDVADGVVFTFNCERCSIHDLC 256 +AS N++ PV A V F + C+RC+ + LC Sbjct: 252 MASVSNVYHPVVCDACQVRSFTGFRYKCQRCANYQLC 288 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,969,002 Number of Sequences: 219361 Number of extensions: 1833788 Number of successful extensions: 7801 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 6933 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7757 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
