ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd0d04 |
|---|---|
| Clone Library Name | barley_pub |
>S23A2_HUMAN (Q9UGH3) Solute carrier family 23 member 2 (Sodium-dependent| vitamin C transporter 2) (hSVCT2) (Na(+)/L-ascorbic acid transporter 2) (Yolk sac permease-like molecule 2) (Nucleobase transporter-like 1 protein) Length = 650 Score = 59.3 bits (142), Expect = 5e-09 Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 13/161 (8%) Frame = +1 Query: 13 INFCQEEKARVIQTLLFVAGINTLLQTFFGSRLPVVMGGSYTFVAPTISIILAGRYD--- 183 + + Q +++I T+ F GI TLLQT FG RLP+ ++ F+AP +I+ ++ Sbjct: 130 VGYDQWATSQLIGTIFFCVGITTLLQTTFGCRLPLFQASAFAFLAPARAILSLDKWKCNT 189 Query: 184 ---NEADPHEKFLRT-------MRGTQGALIIASTIQIILGFSGLWRNXXXXXXXXXXXX 333 + A+ + L T +R QGA+I++S I++++G GL Sbjct: 190 TDVSVANGTAELLHTEHIWYPRIREIQGAIIMSSLIEVVIGLLGLPGALLKYIGPLTITP 249 Query: 334 XXXXXGFGLYELGFPAVAKCVEIGLPELILMVAFSQYLPHV 456 G ++ K I + + L++ FSQY +V Sbjct: 250 TVALIGLSGFQAAGERAGKHWGIAMLTIFLVLLFSQYARNV 290
>S23A2_RAT (Q9WTW8) Solute carrier family 23 member 2 (Sodium-dependent| vitamin C transporter 2) (Na(+)/L-ascorbic acid transporter 2) Length = 592 Score = 54.7 bits (130), Expect = 1e-07 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 11/151 (7%) Frame = +1 Query: 37 ARVIQTLLFVAGINTLLQTFFGSRLPVVMGGSYTFVAPTISIILAGRYD------NEADP 198 +++I T+ F GI TLLQT FG RLP+ ++ F+AP +I+ ++ A+ Sbjct: 82 SQLIGTIFFCVGITTLLQTTFGCRLPLFQASAFAFLAPARAILSLDKWKCNTTEITVANG 141 Query: 199 HEKFLR-----TMRGTQGALIIASTIQIILGFSGLWRNXXXXXXXXXXXXXXXXXGFGLY 363 + L ++ QGA+I++S I++++G GL G + Sbjct: 142 TAELLEHIWHPRIQEIQGAIIMSSLIEVVIGLLGLPGALLRYIGPLTITPTVALIGLSGF 201 Query: 364 ELGFPAVAKCVEIGLPELILMVAFSQYLPHV 456 + K I + + L++ FSQY +V Sbjct: 202 QAAGERAGKHWGIAMLTIFLVLLFSQYARNV 232
>S23A2_MOUSE (Q9EPR4) Solute carrier family 23 member 2 (Sodium-dependent| vitamin C transporter 2) (mSVCT2) (Na(+)/L-ascorbic acid transporter 2) (Yolk sac permease-like molecule 2) Length = 647 Score = 54.7 bits (130), Expect = 1e-07 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 11/151 (7%) Frame = +1 Query: 37 ARVIQTLLFVAGINTLLQTFFGSRLPVVMGGSYTFVAPTISIILAGRYD------NEADP 198 +++I T+ F GI TLLQT FG RLP+ ++ F+AP +I+ ++ A+ Sbjct: 137 SQLIGTIFFCVGITTLLQTTFGCRLPLFQASAFAFLAPARAILSLDKWKCNTTEITVANG 196 Query: 199 HEKFLR-----TMRGTQGALIIASTIQIILGFSGLWRNXXXXXXXXXXXXXXXXXGFGLY 363 + L ++ QGA+I++S I++++G GL G + Sbjct: 197 TAELLEHIWHPRIQEIQGAIIMSSLIEVVIGLLGLPGALLRYIGPLTITPTVALIGLSGF 256 Query: 364 ELGFPAVAKCVEIGLPELILMVAFSQYLPHV 456 + K I + + L++ FSQY +V Sbjct: 257 QAAGERAGKHWGIAMLTIFLVLLFSQYARNV 287
>S23A1_RAT (Q9WTW7) Solute carrier family 23 member 1 (Sodium-dependent| vitamin C transporter 1) (Na(+)/L-ascorbic acid transporter 1) Length = 604 Score = 53.1 bits (126), Expect = 4e-07 Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 14/151 (9%) Frame = +1 Query: 37 ARVIQTLLFVAGINTLLQTFFGSRLPVVMGGSYTFVAPTISIILAGRYDNEADPHEKF-- 210 +++I T+ GI TL+QT G RLP+ ++ F+ P +I+ R+ + P E+ Sbjct: 87 SQLIGTIFTCVGITTLIQTTVGIRLPLFQASAFAFLVPAKAILALERW--KCPPEEEIYG 144 Query: 211 -----LRT-------MRGTQGALIIASTIQIILGFSGLWRNXXXXXXXXXXXXXXXXXGF 354 L T +R QGA++++S +++++G GL G Sbjct: 145 NWSMPLNTSHIWHPRIREVQGAIMVSSVVEVVIGLLGLPGALLSYIGPLTVTPTVSLIGL 204 Query: 355 GLYELGFPAVAKCVEIGLPELILMVAFSQYL 447 +++ I ++L+V FSQYL Sbjct: 205 SVFQAAGDRAGSHWGISACSILLIVLFSQYL 235
>S23A1_MOUSE (Q9Z2J0) Solute carrier family 23 member 1 (Sodium-dependent| vitamin C transporter 1) (Na(+)/L-ascorbic acid transporter 1) (Yolk sac permease-like molecule 3) Length = 605 Score = 53.1 bits (126), Expect = 4e-07 Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 12/153 (7%) Frame = +1 Query: 25 QEEKARVIQTLLFVAGINTLLQTFFGSRLPVVMGGSYTFVAPTISII------------L 168 Q +++I T+ GI TL+QT G RLP+ ++ F+ P SI+ + Sbjct: 83 QHMVSQLIGTIFTCVGITTLIQTTVGIRLPLFQASAFAFLVPAKSILALERWKCPSEEEI 142 Query: 169 AGRYDNEADPHEKFLRTMRGTQGALIIASTIQIILGFSGLWRNXXXXXXXXXXXXXXXXX 348 G + + + +R QGA++++S +++++G GL Sbjct: 143 YGNWSMPLNTSHIWHPRIREVQGAIMVSSMVEVVIGLMGLPGALLSYIGPLTVTPTVSLI 202 Query: 349 GFGLYELGFPAVAKCVEIGLPELILMVAFSQYL 447 G +++ I ++L+V FSQYL Sbjct: 203 GLSVFQAAGDRAGSHWGISACSILLIVLFSQYL 235
>S23A1_HUMAN (Q9UHI7) Solute carrier family 23 member 1 (Sodium-dependent| vitamin C transporter 1) (hSVCT1) (Na(+)/L-ascorbic acid transporter 1) (Yolk sac permease-like molecule 3) Length = 598 Score = 52.8 bits (125), Expect = 5e-07 Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 14/155 (9%) Frame = +1 Query: 25 QEEKARVIQTLLFVAGINTLLQTFFGSRLPVVMGGSYTFVAPTISIILAGRYDNEADPHE 204 Q +++I T+ GI TL+QT G RLP+ ++ F+ P +I+ R+ + P E Sbjct: 76 QHMVSQLIGTIFTCVGITTLIQTTVGIRLPLFQASAFAFLVPAKAILALERW--KCPPEE 133 Query: 205 KF-------LRT-------MRGTQGALIIASTIQIILGFSGLWRNXXXXXXXXXXXXXXX 342 + L T +R QGA++++S +++++G GL Sbjct: 134 EIYGNWSLPLNTSHIWHPRIREVQGAIMVSSVVEVVIGLLGLPGALLNYIGPLTVTPTVS 193 Query: 343 XXGFGLYELGFPAVAKCVEIGLPELILMVAFSQYL 447 G +++ I ++L++ FSQYL Sbjct: 194 LIGLSVFQAAGDRAGSHWGISACSILLIILFSQYL 228
>YGFU_ECOLI (Q46821) Putative purine permease ygfU| Length = 482 Score = 39.7 bits (91), Expect = 0.004 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 5/58 (8%) Frame = +1 Query: 4 GTRINFCQEEKARVIQTLLFVAGINTLLQT-----FFGSRLPVVMGGSYTFVAPTISI 162 G R+ +E A +I + LF GI TLLQ F G RLPV+M ++ V P I+I Sbjct: 53 GDRLGLSKEAIAMLISSDLFCCGIVTLLQCIGIGRFMGIRLPVIMSVTFAAVTPMIAI 110
>YWDJ_BACSU (P39618) Putative purine permease ywdJ| Length = 460 Score = 39.3 bits (90), Expect = 0.006 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 6/87 (6%) Frame = +1 Query: 31 EKARVIQTLLFVAGINTLLQTFFGSRLPV------VMGGSYTFVAPTISIILAGRYDNEA 192 + AR+IQ+ FV GI ++Q G RLP+ + G YT A + A D Sbjct: 35 DSARLIQSTFFVLGIAAVIQCLKGHRLPINESPAGLWWGVYTIYAGLTGTVFATYGD--- 91 Query: 193 DPHEKFLRTMRGTQGALIIASTIQIIL 273 T+RG QGAL++++ +L Sbjct: 92 --------TLRGLQGALLVSAVCFFLL 110
>PBUX_BACSU (P42086) Xanthine permease| Length = 438 Score = 38.5 bits (88), Expect = 0.009 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 4/57 (7%) Frame = +1 Query: 4 GTRINFCQEEKARVIQTLLFVAGINTLLQT----FFGSRLPVVMGGSYTFVAPTISI 162 G + E+ ++ +F+ G+ TLLQ FFG LPVV+G ++T V+P I+I Sbjct: 31 GKAMGLTVEQLTYLVSIDIFMCGVATLLQVWSNRFFGIGLPVVLGCTFTAVSPMIAI 87
>PUCK_BACSU (O32140) Uric acid permease pucK| Length = 430 Score = 35.4 bits (80), Expect = 0.080 Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 4/39 (10%) Frame = +1 Query: 58 LFVAGINTLLQT----FFGSRLPVVMGGSYTFVAPTISI 162 LF+ G TLLQ +FG LPVV+G ++T V P ISI Sbjct: 51 LFMCGAATLLQLWRNRYFGIGLPVVLGCTFTAVGPMISI 89
>Y397_CLOPE (P50487) Putative purine permease CPE0397| Length = 452 Score = 34.3 bits (77), Expect = 0.18 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 4/95 (4%) Frame = +1 Query: 7 TRINFCQEEKARVIQTLLFVAGINTLLQTF----FGSRLPVVMGGSYTFVAPTISIILAG 174 T + F + +I + +G+ T++Q G+R+ +MG +TFV+P IS+ Sbjct: 50 TSLGFDSKVTTALISASILGSGLATIIQAKGVGKVGARVACIMGTDFTFVSPAISV---- 105 Query: 175 RYDNEADPHEKFLRTMRGTQGALIIASTIQIILGF 279 + + G GA I+ S ++IL F Sbjct: 106 ----------GSVLGLPGIIGATILGSLFEVILSF 130
>CBPY_SCHPO (O13849) Carboxypeptidase Y precursor (EC 3.4.16.5) (CPY)| Length = 1002 Score = 32.7 bits (73), Expect = 0.52 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 3/75 (4%) Frame = +3 Query: 51 DAPVRGRHKHLAANLLRVSPPRRDGRLLHLCRADHLHHIGRTL*QRGRPSREIPTDDE-- 224 D VR + H +A+ +P R+ G+ C+ HH G+ +G+ S P DD Sbjct: 126 DEHVREKRPHDSAD--EDAPRRKHGK----CKGKGKHHKGKHAKGKGKKSHPKPEDDSVF 179 Query: 225 -GDTRRSHHRVHDPD 266 D R HH D D Sbjct: 180 FDDERPKHHEFDDED 194
>TMEPA_MOUSE (Q9D7R2) Transmembrane prostate androgen-induced protein (NEDD4 WW| domain-binding protein 4) Length = 260 Score = 30.8 bits (68), Expect = 2.0 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 4/59 (6%) Frame = +2 Query: 2 SARGLIS----VRRRKLG*SRRSCSWPA*TPCCKPSSGLASPS*WAAPTPLSRRPSPSY 166 SAR IS RRR G S C WP+ + S G+ P +A P P R P + Sbjct: 50 SARSFISRHSQARRRDDGLSSEGCLWPSESTV---SGGMPEPQVYAPPRPTDRLAVPPF 105
>ZO2_HUMAN (Q9UDY2) Tight junction protein ZO-2 (Zonula occludens 2 protein)| (Zona occludens 2 protein) (Tight junction protein 2) Length = 1190 Score = 30.4 bits (67), Expect = 2.6 Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 19/100 (19%) Frame = +3 Query: 27 GGESSGNPDAPVRGR-HKHLAANLLRVSPPRRDGRLLHL-CRADHLHHIGRTL*QRGR-- 194 GG S D+P RGR H+ + +S R GR L DH R+ RGR Sbjct: 165 GGRSRSWEDSPERGRPHERARSRERDLSRDRSRGRSLERGLDQDHARTRDRS---RGRSL 221 Query: 195 ---------PSREIPTDD------EGDTRRSHHRVHDPDH 269 PSR+ D + D R++HR +DPD+ Sbjct: 222 ERGLDHDFGPSRDRDRDRSRGRSIDQDYERAYHRAYDPDY 261
>XYLB_STAES (Q8CR47) D-xylulose kinase (EC 2.7.1.-)| Length = 496 Score = 30.4 bits (67), Expect = 2.6 Identities = 18/54 (33%), Positives = 29/54 (53%) Frame = -2 Query: 466 QNAAHEANTEKMRPLG*ALEDRFPRTWLPLESQAHKAQIRQVKQEELQIMGSVI 305 + A HE N+ + +G + RF WL L++ QI+++K EE MG+ I Sbjct: 386 RRAGHEMNS--ITSIGGGAKSRF---WLQLQADIFNVQIKRLKHEEGPSMGAAI 434
>XYLB_STAEQ (Q5HL88) D-xylulose kinase (EC 2.7.1.-)| Length = 496 Score = 30.4 bits (67), Expect = 2.6 Identities = 18/54 (33%), Positives = 29/54 (53%) Frame = -2 Query: 466 QNAAHEANTEKMRPLG*ALEDRFPRTWLPLESQAHKAQIRQVKQEELQIMGSVI 305 + A HE N+ + +G + RF WL L++ QI+++K EE MG+ I Sbjct: 386 RRAGHEMNS--ITSIGGGAKSRF---WLQLQADIFNVQIKRLKHEEGPSMGAAI 434
>RL15_ASPNG (O13418) 60S ribosomal protein L15| Length = 203 Score = 30.0 bits (66), Expect = 3.3 Identities = 19/54 (35%), Positives = 23/54 (42%) Frame = +3 Query: 114 RRDGRLLHLCRADHLHHIGRTL*QRGRPSREIPTDDEGDTRRSHHRVHDPDHPW 275 RRD R+ +C A H H R L G+ SR I + RS R H W Sbjct: 143 RRDARINWICNAVHKHREARGLTATGKKSRGINKGHRYNNTRSGRR-----HTW 191
>NKTR_MOUSE (P30415) NK-tumor recognition protein (Natural-killer cells| cyclophilin-related protein) (NK-TR protein) Length = 1453 Score = 29.6 bits (65), Expect = 4.4 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 159 HHIGRTL*QRGRPSREIPTDDEGDTRRSHHR 251 +H GR+ +R R R +D E D SHHR Sbjct: 1414 YHRGRSYNRRSRSGRSYGSDSESDRSYSHHR 1444
>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding| protein MBD6) Length = 1003 Score = 29.3 bits (64), Expect = 5.7 Identities = 25/73 (34%), Positives = 34/73 (46%) Frame = -3 Query: 297 IAPEAAEAKDDLDRGRDDESALCPPHRP*EFLVRVCLVVIASGQYDGDGRRDKGVGAAHH 118 + PE+ + + + R SAL PPH + V L SG+ GRR G G Sbjct: 813 LPPESPASALEPEPARPPLSALAPPHGSPDPPVPELLTGRGSGKR---GRRGGG-GLRGI 868 Query: 117 DGEARPEEGLQQG 79 +GEARP G + G Sbjct: 869 NGEARPARGRKPG 881
>GYRB_HAEIN (P43701) DNA gyrase subunit B (EC 5.99.1.3)| Length = 806 Score = 29.3 bits (64), Expect = 5.7 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Frame = +1 Query: 73 INTLLQTFFGSRLPVVMGGSYTFVA-PTISIILAG---RYDNEADPHEKFLRTMRGTQGA 240 I TLL TFF ++P ++ Y ++A P + + G RY +AD E++ T+ GA Sbjct: 509 IRTLLLTFFYRQMPELIERGYVYIAQPPLYKVKKGKQERYIKDADEMEQYELTL-ALDGA 567 Query: 241 LIIAST 258 + ST Sbjct: 568 ELHIST 573
>NKTR_HUMAN (P30414) NK-tumor recognition protein (Natural-killer cells| cyclophilin-related protein) (NK-TR protein) Length = 1462 Score = 29.3 bits (64), Expect = 5.7 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 159 HHIGRTL*QRGRPSREIPTDDEGDTRRSHHR 251 +H GR+ +R R R +D E D SHHR Sbjct: 1423 YHRGRSYNRRSRSCRSYGSDSESDRSYSHHR 1453
>YAKB_SCHPO (Q09922) Putative transcriptional regulatory protein C1F7.11c| Length = 782 Score = 28.9 bits (63), Expect = 7.5 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +3 Query: 204 EIPTDDEGDTRRSHHRVHDPDHPWLQ 281 E P +D D RS +HDPDHP L+ Sbjct: 106 EKPAEDTKDENRSQP-IHDPDHPTLE 130
>SEM6B_MOUSE (O54951) Semaphorin-6B precursor (Semaphorin VIB) (Sema VIB)| (Semaphorin N) (Sema N) Length = 886 Score = 28.9 bits (63), Expect = 7.5 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%) Frame = +2 Query: 92 PSSGLASPS*WAAPTPLS-RRPSPSYWPDAMTTRQTLTRNSYGR*GGHK 235 PS G P W+ P S RRP P P A R + R GGH+ Sbjct: 812 PSVGDGLPGPWSPPATSSLRRPGPHGPPTAALRRTHTFNSGEARPGGHR 860
>SYRM1_RHISN (P55619) HTH-type transcriptional regulator syrM 1 (Symbiotic| regulator homolog 1) Length = 338 Score = 28.5 bits (62), Expect = 9.7 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%) Frame = +3 Query: 243 HHRVH-DPDHPWLQRPLAQCCQITE 314 H R H DPDH WL++ +A TE Sbjct: 303 HERCHRDPDHRWLRQEIAAAATATE 327
>ABC3G_ERYPA (Q694C5) DNA dC->dU-editing enzyme APOBEC-3G (EC 3.5.4.-)| Length = 383 Score = 28.5 bits (62), Expect = 9.7 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -3 Query: 195 VCLVVIASGQYDGDGRRDKGVGAAHHDG 112 V L + A+ YD GRR +G+ H DG Sbjct: 304 VSLCIFAARIYDDQGRRQEGLRTLHRDG 331 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,537,107 Number of Sequences: 219361 Number of extensions: 1504654 Number of successful extensions: 4262 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4075 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4257 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
