>gb|U44802.1|ASU44802 Avena sativa host response mRNA, partial 5'UTR
          Length = 110

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                        
Query: 2   cagctctcagccaagtacaactctgccgtgcttgatggtgctaag 46
           |||||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 66  cagctctcagccaagtacaactctgctgtgatcgatggggctaag 110

>ref|XM_493928.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 690

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 59  gtcgccacctacctcccactcgtccccacggagcgc 94
           ||||||||||||||||| ||||||||||| ||||||
Sbjct: 574 gtcgccacctacctcccgctcgtccccaccgagcgc 609



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 149 gagatgcagcccatcccgacgcagtaa 175
           |||||||||||||||||| ||||||||
Sbjct: 664 gagatgcagcccatcccgtcgcagtaa 690

>gb|AC084218.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0001A07,
              complete sequence
          Length = 164898

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                  
Query: 59     gtcgccacctacctcccactcgtccccacggagcgc 94
              ||||||||||||||||| ||||||||||| ||||||
Sbjct: 105498 gtcgccacctacctcccgctcgtccccaccgagcgc 105463



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 149    gagatgcagcccatcccgacgcagtaa 175
              |||||||||||||||||| ||||||||
Sbjct: 105408 gagatgcagcccatcccgtcgcagtaa 105382

>gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBa0072C16, complete sequence
          Length = 159525

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 59   gtcgccacctacctcccactcgtccccacggagcgc 94
            ||||||||||||||||| ||||||||||| ||||||
Sbjct: 4903 gtcgccacctacctcccgctcgtccccaccgagcgc 4868



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 149  gagatgcagcccatcccgacgcagtaa 175
            |||||||||||||||||| ||||||||
Sbjct: 4813 gagatgcagcccatcccgtcgcagtaa 4787

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                   
Query: 59      gtcgccacctacctcccactcgtccccacggagcgc 94
               ||||||||||||||||| ||||||||||| ||||||
Sbjct: 2910887 gtcgccacctacctcccgctcgtccccaccgagcgc 2910852



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 149     gagatgcagcccatcccgacgcagtaa 175
               |||||||||||||||||| ||||||||
Sbjct: 2910797 gagatgcagcccatcccgtcgcagtaa 2910771

>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete
               sequence
          Length = 1347793

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 251     tgtggtggatagtggtattat 271
               |||||||||||||||||||||
Sbjct: 1159042 tgtggtggatagtggtattat 1159062

>gb|AC144705.2| Danio rerio clone CH211-160P5, complete sequence
          Length = 163897

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 360    tttgttctgcatgaaccactg 380
              |||||||||||||||||||||
Sbjct: 112051 tttgttctgcatgaaccactg 112071

>ref|XM_799945.1| Trypanosoma cruzi strain CL Brener trans-sialidase
            (Tc00.1047053504341.10) partial mRNA
          Length = 2784

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 70   cctcccactcgtccccacggagcgcatcg 98
            ||||||||| |||||||||||||| ||||
Sbjct: 1498 cctcccacttgtccccacggagcgtatcg 1470

>ref|XM_804633.1| Trypanosoma cruzi strain CL Brener trans-sialidase
            (Tc00.1047053507997.14) partial mRNA
          Length = 1695

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 70   cctcccactcgtccccacggagcgcatcg 98
            ||||||||| |||||||||||||| ||||
Sbjct: 1498 cctcccacttgtccccacggagcgtatcg 1470

>ref|XM_815093.1| Trypanosoma cruzi strain CL Brener trans-sialidase
            (Tc00.1047053510307.284) partial mRNA
          Length = 3402

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 70   cctcccactcgtccccacggagcgcatcg 98
            ||||||||| |||||||||||||| ||||
Sbjct: 1498 cctcccacttgtccccacggagcgtatcg 1470

>gb|AC015967.8| Homo sapiens chromosome 18, clone RP11-294N21, complete sequence
          Length = 186726

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 310    ggcgactctgaatgctgctgctgtg 334
              ||||||| |||||||||||||||||
Sbjct: 185043 ggcgactgtgaatgctgctgctgtg 185067

>ref|XM_572161.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7
          Length = 1558

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 251  tgtggtggatagtggtattat 271
            |||||||||||||||||||||
Sbjct: 1409 tgtggtggatagtggtattat 1429

>gb|AC009277.4|AC009277 Homo sapiens chromosome 18, clone RP11-481E24, complete sequence
          Length = 160401

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 310   ggcgactctgaatgctgctgctgtg 334
             ||||||| |||||||||||||||||
Sbjct: 13165 ggcgactgtgaatgctgctgctgtg 13189

>emb|CR556710.7| Zebrafish DNA sequence from clone CH211-132E22 in linkage group 13,
             complete sequence
          Length = 97211

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 360   tttgttctgcatgaaccactg 380
             |||||||||||||||||||||
Sbjct: 20406 tttgttctgcatgaaccactg 20386

>emb|AL844866.17| Mouse DNA sequence from clone RP23-418O17 on chromosome X, complete
              sequence
          Length = 173461

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 421    gtaaattcattctgtttatgc 441
              |||||||||||||||||||||
Sbjct: 117539 gtaaattcattctgtttatgc 117559

>gb|AY612686.1| Todea barbara ribulose 1,5-bisphosphate carboxylase/oxygenase large
           subunit (rbcL) gene, partial cds; chloroplast
          Length = 1320

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 384 gtaatgctttgaatccaaac 403
           ||||||||||||||||||||
Sbjct: 360 gtaatgctttgaatccaaac 341

>gb|AY612678.1| Leptopteris wilkesiana ribulose 1,5-bisphosphate
           carboxylase/oxygenase large subunit (rbcL) gene, partial
           cds; chloroplast
          Length = 1322

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 384 gtaatgctttgaatccaaac 403
           ||||||||||||||||||||
Sbjct: 361 gtaatgctttgaatccaaac 342

>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 194     gttatgttacttaatagttt 213
               ||||||||||||||||||||
Sbjct: 3513319 gttatgttacttaatagttt 3513300

>gb|AC133649.2| Mus musculus BAC clone RP23-341M13 from chromosome 19, complete
             sequence
          Length = 187971

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   gcagtaacagtaagagttac 188
             ||||||||||||||||||||
Sbjct: 86750 gcagtaacagtaagagttac 86731

>gb|AC132099.3| Mus musculus BAC clone RP24-292F6 from chromosome 16, complete sequence
          Length = 160650

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 379   tgtgtgtaatgctttgaatc 398
             ||||||||||||||||||||
Sbjct: 76857 tgtgtgtaatgctttgaatc 76876

>emb|AL359394.9| Human DNA sequence from clone RP11-264M20 on chromosome 13 Contains a
              novel pseudogene, complete sequence
          Length = 137246

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 420    tgtaaattcattctgtttat 439
              ||||||||||||||||||||
Sbjct: 135222 tgtaaattcattctgtttat 135241

>emb|AL356432.17| Human DNA sequence from clone RP11-325O24 on chromosome 6 Contains a
             novel pseudogene, a pseudogene similar to part of
             transducin (beta)-like 1X-linked TBL1X and the 3' end of
             the C6orf190 gene, complete sequence
          Length = 170136

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 273   tgtgggatggtcactgtgat 292
             ||||||||||||||||||||
Sbjct: 29544 tgtgggatggtcactgtgat 29525

>gb|AC111193.5| Homo sapiens BAC clone RP11-397D21 from 4, complete sequence
          Length = 73175

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 407   atgaaacaccatctgtaaattcat 430
             ||||||||||| ||||||||||||
Sbjct: 59623 atgaaacaccacctgtaaattcat 59646

>gb|AC110620.3| Homo sapiens BAC clone RP11-683I7 from 2, complete sequence
          Length = 142234

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   ccacagctccagagatgcag 157
             ||||||||||||||||||||
Sbjct: 34072 ccacagctccagagatgcag 34091

>emb|AL672110.10| Mouse DNA sequence from clone RP23-338D24 on chromosome X, complete
             sequence
          Length = 167407

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 371   tgaaccactgtgtgtaatgctttg 394
             |||||||| |||||||||||||||
Sbjct: 57615 tgaaccacagtgtgtaatgctttg 57592

>dbj|AB024959.1| Todea barbara chloroplast rbcL gene for large subunit of
           ribulose-1,5-bisphosphate carboxylase/oxygenase, partial
           cds
          Length = 1231

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 384 gtaatgctttgaatccaaac 403
           ||||||||||||||||||||
Sbjct: 326 gtaatgctttgaatccaaac 307

>dbj|AB024958.1| Leptopteris wilksiana chloroplast rbcL gene for large subunit of
           ribulose-1,5-bisphosphate carboxylase/oxygenase, partial
           cds
          Length = 1231

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 384 gtaatgctttgaatccaaac 403
           ||||||||||||||||||||
Sbjct: 326 gtaatgctttgaatccaaac 307

>dbj|AB024957.1| Leptopteris hymenophylloides chloroplast rbcL gene for large
           subunit of ribulose-1,5-bisphosphate
           carboxylase/oxygenase, partial cds
          Length = 1231

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 384 gtaatgctttgaatccaaac 403
           ||||||||||||||||||||
Sbjct: 326 gtaatgctttgaatccaaac 307

>gb|AC064793.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-369O21, complete
             sequence
          Length = 196933

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 314   actctgaatgctgctgctgt 333
             ||||||||||||||||||||
Sbjct: 63353 actctgaatgctgctgctgt 63372

>dbj|AB076260.1| Todea barbara rbcL gene for ribulose 1,5-bisphosphate carboxylase
           large subunit, partial cds
          Length = 1227

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 384 gtaatgctttgaatccaaac 403
           ||||||||||||||||||||
Sbjct: 322 gtaatgctttgaatccaaac 303


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,654,448
Number of Sequences: 3902068
Number of extensions: 4654448
Number of successful extensions: 82644
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82557
Number of HSP's gapped (non-prelim): 87
length of query: 493
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 471
effective length of database: 17,147,199,772
effective search space: 8076331092612
effective search space used: 8076331092612
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)