ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | basd0c03 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ495777.1|HVU495777 Hordeum vulgare partial mRNA for EPSP-synthase, 3' UTR Length = 217 Score = 238 bits (120), Expect = 1e-59 Identities = 120/120 (100%) Strand = Plus / Plus Query: 258 gtcttctcgcgagatggtgtatgagtctttaatattagttttgtagtgcgttggccttga 317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78 gtcttctcgcgagatggtgtatgagtctttaatattagttttgtagtgcgttggccttga 137 Query: 318 tgtaaaatgaaatgtattgcgcactgtattcgttttttgaataagaaataaattgccgtt 377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138 tgtaaaatgaaatgtattgcgcactgtattcgttttttgaataagaaataaattgccgtt 197 Score = 115 bits (58), Expect = 1e-22 Identities = 61/62 (98%) Strand = Plus / Plus Query: 181 gatcggagaatctacggcgaattgcgcttgtacttctgtagcccctgtccatggtatgag 240 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1 gatcggagaatctacggcgaattgcgcttgtacttctgtagcctctgtccatggtatgag 60 Query: 241 ga 242 || Sbjct: 61 ga 62
>dbj|AB124892.1| Oryza punctata EPSPs, rps20 genes for 5-enolpyruvylshikimate-3-phosphate synthase, ribosomal protein small subunit 20, partial sequences, cultivar:W1514 Length = 3220 Score = 145 bits (73), Expect = 1e-31 Identities = 109/121 (90%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || |||||||| || ||||| ||||| |||||||||||| Sbjct: 497 atggccatggccttctccctcgccgcctgcgccgacgtgcccgtgacgatcagggacccc 556 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaac 178 || |||||||| |||||||||||||||||||||||||| |||||||| || ||||||||| Sbjct: 557 ggttgcacccgcaagaccttccccaactacttcgacgtgctaagcactttcgtcaagaac 616 Query: 179 t 179 | Sbjct: 617 t 617
>dbj|AB124893.1| Oryza officinalis EPSPs, rps20 genes for 5-enolpyruvylshikimate-3-phosphate synthase, ribosomal protein small subunit 20, partial sequences, cultivar:W1272 Length = 3069 Score = 137 bits (69), Expect = 3e-29 Identities = 108/121 (89%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || |||||||| || ||||| ||||| |||| ||||||| Sbjct: 494 atggccatggccttctccctcgctgcctgcgccgacgtgcccgtgacgatcaaggacccc 553 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaac 178 || |||||||| |||||||||||||||||||||||||| |||||||| || ||||||||| Sbjct: 554 ggatgcacccgcaagaccttccccaactacttcgacgtgctaagcactttcgtcaagaac 613 Query: 179 t 179 | Sbjct: 614 t 614
>ref|XM_550613.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1548 Score = 129 bits (65), Expect = 7e-27 Identities = 107/121 (88%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || |||||||| || ||||| ||||| ||||||||||| Sbjct: 1426 atggccatggccttctccctcgctgcctgcgccgacgtgcccgtgacgatcagggaccct 1485 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaac 178 || |||||||| |||||||||||||||||||||||||| |||||||| || |||| |||| Sbjct: 1486 ggttgcacccgcaagaccttccccaactacttcgacgttctaagcactttcgtcaggaac 1545 Query: 179 t 179 | Sbjct: 1546 t 1546
>gb|AF413082.1|AF413082 Oryza sativa EPSP synthase mRNA, complete cds Length = 1585 Score = 129 bits (65), Expect = 7e-27 Identities = 107/121 (88%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || |||||||| || ||||| ||||| ||||||||||| Sbjct: 1426 atggccatggccttctccctcgctgcctgcgccgacgtgcccgtgacgatcagggaccct 1485 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaac 178 || |||||||| |||||||||||||||||||||||||| |||||||| || |||| |||| Sbjct: 1486 ggttgcacccgcaagaccttccccaactacttcgacgttctaagcactttcgtcaggaac 1545 Query: 179 t 179 | Sbjct: 1546 t 1546
>gb|AF413081.1|AF413081 Oryza sativa 5-enolpyruvylshikimate 3-phosphate synthase gene, complete cds Length = 3661 Score = 129 bits (65), Expect = 7e-27 Identities = 107/121 (88%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || |||||||| || ||||| ||||| ||||||||||| Sbjct: 3502 atggccatggccttctccctcgctgcctgcgccgacgtgcccgtgacgatcagggaccct 3561 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaac 178 || |||||||| |||||||||||||||||||||||||| |||||||| || |||| |||| Sbjct: 3562 ggttgcacccgcaagaccttccccaactacttcgacgttctaagcactttcgtcaggaac 3621 Query: 179 t 179 | Sbjct: 3622 t 3622
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 129 bits (65), Expect = 7e-27 Identities = 107/121 (88%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || |||||||| || ||||| ||||| ||||||||||| Sbjct: 1818402 atggccatggccttctccctcgctgcctgcgccgacgtgcccgtgacgatcagggaccct 1818461 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaac 178 || |||||||| |||||||||||||||||||||||||| |||||||| || |||| |||| Sbjct: 1818462 ggttgcacccgcaagaccttccccaactacttcgacgttctaagcactttcgtcaggaac 1818521 Query: 179 t 179 | Sbjct: 1818522 t 1818522
>dbj|AB124890.1| Oryza longistaminata EPSPs, rps20 genes for 5-enolpyruvylshikimate-3-phosphate synthase, ribosomal protein small subunit 20, partial sequences, cultivar:W1034 Length = 2888 Score = 129 bits (65), Expect = 7e-27 Identities = 107/121 (88%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || |||||||| || ||||| ||||| ||||||||||| Sbjct: 475 atggccatggccttctccctcgctgcctgcgccgacgtgcccgtgacgatcagggaccct 534 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaac 178 || |||||||| |||||||||||||||||||||||||| |||||||| || |||| |||| Sbjct: 535 ggttgcacccgcaagaccttccccaactacttcgacgtgctaagcactttcgtcaggaac 594 Query: 179 t 179 | Sbjct: 595 t 595
>dbj|AB124889.1| Oryza meridionalis EPSPs, rps20 genes for 5-enolpyruvylshikimate-3-phosphate synthase, ribosomal protein small subunit 20, partial sequences Length = 2902 Score = 129 bits (65), Expect = 7e-27 Identities = 107/121 (88%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || |||||||| || ||||| ||||| ||||||||||| Sbjct: 504 atggccatggccttctccctcgctgcctgcgccgacgtgcccgtgacgatcagggaccct 563 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaac 178 || |||||||| |||||||||||||||||||||||||| |||||||| || |||| |||| Sbjct: 564 ggttgcacccgcaagaccttccccaactacttcgacgttctaagcactttcgtcaggaac 623 Query: 179 t 179 | Sbjct: 624 t 624
>dbj|AB124888.1| Oryza glumipatula EPSPs, rps20 genes for 5-enolpyruvylshikimate-3-phosphate synthase, ribosomal protein small subunit 20, partial sequences, cultivar:W1185 Length = 3003 Score = 129 bits (65), Expect = 7e-27 Identities = 107/121 (88%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || |||||||| || ||||| ||||| ||||||||||| Sbjct: 515 atggccatggccttctccctcgctgcctgcgccgacgtgcccgtgacgatcagggaccct 574 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaac 178 || |||||||| |||||||||||||||||||||||||| |||||||| || |||| |||| Sbjct: 575 ggttgcacccgcaagaccttccccaactacttcgacgtgctaagcactttcgtcaggaac 634 Query: 179 t 179 | Sbjct: 635 t 635
>dbj|AB124885.1| Oryza rufipogon EPSPs, rps20 genes for 5-enolpyruvylshikimate-3-phosphate synthase, ribosomal protein small subunit 20, partial sequences, cultivar:W1945 Length = 2906 Score = 129 bits (65), Expect = 7e-27 Identities = 107/121 (88%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || |||||||| || ||||| ||||| ||||||||||| Sbjct: 507 atggccatggccttctccctcgctgcctgcgccgacgtgcccgtgacgatcagggaccct 566 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaac 178 || |||||||| |||||||||||||||||||||||||| |||||||| || |||| |||| Sbjct: 567 ggttgcacccgcaagaccttccccaactacttcgacgttctaagcactttcgtcaggaac 626 Query: 179 t 179 | Sbjct: 627 t 627
>dbj|AB124884.1| Oryza rufipogon EPSPs, rps20 genes for 5-enolpyruvylshikimate-3-phosphate synthase, ribosomal protein small subunit 20, partial sequences, cultivar:W107 Length = 2901 Score = 129 bits (65), Expect = 7e-27 Identities = 107/121 (88%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || |||||||| || ||||| ||||| ||||||||||| Sbjct: 507 atggccatggccttctccctcgctgcctgcgccgacgtgcccgtgacgatcagggaccct 566 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaac 178 || |||||||| |||||||||||||||||||||||||| |||||||| || |||| |||| Sbjct: 567 ggttgcacccgcaagaccttccccaactacttcgacgttctaagcactttcgtcaggaac 626 Query: 179 t 179 | Sbjct: 627 t 627
>dbj|AB124883.1| Oryza sativa (indica cultivar-group) EPSPs, rps20 genes for 5-enolpyruvylshikimate-3-phosphate synthase, ribosomal protein small subunit 20, partial sequences, cultivar:PTB10 Length = 2903 Score = 129 bits (65), Expect = 7e-27 Identities = 107/121 (88%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || |||||||| || ||||| ||||| ||||||||||| Sbjct: 507 atggccatggccttctccctcgctgcctgcgccgacgtgcccgtgacgatcagggaccct 566 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaac 178 || |||||||| |||||||||||||||||||||||||| |||||||| || |||| |||| Sbjct: 567 ggttgcacccgcaagaccttccccaactacttcgacgttctaagcactttcgtcaggaac 626 Query: 179 t 179 | Sbjct: 627 t 627
>dbj|AB124882.1| Oryza sativa (japonica cultivar-group) EPSPs, rps20 genes for 5-enolpyruvylshikimate-3-phosphate synthase, ribosomal protein small subunit 20, partial sequences, cultivar:T65wx Length = 2899 Score = 129 bits (65), Expect = 7e-27 Identities = 107/121 (88%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || |||||||| || ||||| ||||| ||||||||||| Sbjct: 507 atggccatggccttctccctcgctgcctgcgccgacgtgcccgtgacgatcagggaccct 566 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaac 178 || |||||||| |||||||||||||||||||||||||| |||||||| || |||| |||| Sbjct: 567 ggttgcacccgcaagaccttccccaactacttcgacgttctaagcactttcgtcaggaac 626 Query: 179 t 179 | Sbjct: 627 t 627
>dbj|AB124881.1| Oryza sativa (japonica cultivar-group) EPSPs, rps20 genes for 5-enolpyruvylshikimate-3-phosphate synthase, ribosomal protein small subunit 20, partial sequences, cultivar:Shimokita Length = 2899 Score = 129 bits (65), Expect = 7e-27 Identities = 107/121 (88%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || |||||||| || ||||| ||||| ||||||||||| Sbjct: 507 atggccatggccttctccctcgctgcctgcgccgacgtgcccgtgacgatcagggaccct 566 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaac 178 || |||||||| |||||||||||||||||||||||||| |||||||| || |||| |||| Sbjct: 567 ggttgcacccgcaagaccttccccaactacttcgacgttctaagcactttcgtcaggaac 626 Query: 179 t 179 | Sbjct: 627 t 627
>dbj|AP004234.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0001H02 Length = 147160 Score = 129 bits (65), Expect = 7e-27 Identities = 107/121 (88%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || |||||||| || ||||| ||||| ||||||||||| Sbjct: 18880 atggccatggccttctccctcgctgcctgcgccgacgtgcccgtgacgatcagggaccct 18939 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaac 178 || |||||||| |||||||||||||||||||||||||| |||||||| || |||| |||| Sbjct: 18940 ggttgcacccgcaagaccttccccaactacttcgacgttctaagcactttcgtcaggaac 18999 Query: 179 t 179 | Sbjct: 19000 t 19000
>dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0679C08 Length = 156266 Score = 129 bits (65), Expect = 7e-27 Identities = 107/121 (88%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || |||||||| || ||||| ||||| ||||||||||| Sbjct: 143551 atggccatggccttctccctcgctgcctgcgccgacgtgcccgtgacgatcagggaccct 143610 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaac 178 || |||||||| |||||||||||||||||||||||||| |||||||| || |||| |||| Sbjct: 143611 ggttgcacccgcaagaccttccccaactacttcgacgttctaagcactttcgtcaggaac 143670 Query: 179 t 179 | Sbjct: 143671 t 143671
>dbj|AK106717.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-G01, full insert sequence Length = 2114 Score = 129 bits (65), Expect = 7e-27 Identities = 107/121 (88%) Strand = Plus / Minus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || |||||||| || ||||| ||||| ||||||||||| Sbjct: 1178 atggccatggccttctccctcgctgcctgcgccgacgtgcccgtgacgatcagggaccct 1119 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaac 178 || |||||||| |||||||||||||||||||||||||| |||||||| || |||| |||| Sbjct: 1118 ggttgcacccgcaagaccttccccaactacttcgacgttctaagcactttcgtcaggaac 1059 Query: 179 t 179 | Sbjct: 1058 t 1058
>dbj|AB052962.1| Oryza sativa EPSPs, rps20 genes for 3-phosphoshikimate 1-carboxyvinyltransferase, 40S ribosomal protein S20, complete cds Length = 10601 Score = 129 bits (65), Expect = 7e-27 Identities = 107/121 (88%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || |||||||| || ||||| ||||| ||||||||||| Sbjct: 6501 atggccatggccttctccctcgctgcctgcgccgacgtgcccgtgacgatcagggaccct 6560 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaac 178 || |||||||| |||||||||||||||||||||||||| |||||||| || |||| |||| Sbjct: 6561 ggttgcacccgcaagaccttccccaactacttcgacgttctaagcactttcgtcaggaac 6620 Query: 179 t 179 | Sbjct: 6621 t 6621
>dbj|AB016765.1| Oryza sativa (japonica cultivar-group) mRNA for 3-phosphoshikimate 1-carboxyvinyltransferase, complete cds Length = 1551 Score = 129 bits (65), Expect = 7e-27 Identities = 107/121 (88%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || |||||||| || ||||| ||||| ||||||||||| Sbjct: 1183 atggccatggccttctccctcgctgcctgcgccgacgtgcccgtgacgatcagggaccct 1242 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaac 178 || |||||||| |||||||||||||||||||||||||| |||||||| || |||| |||| Sbjct: 1243 ggttgcacccgcaagaccttccccaactacttcgacgttctaagcactttcgtcaggaac 1302 Query: 179 t 179 | Sbjct: 1303 t 1303
>emb|AJ417034.1|EIN417034 Eleusine indica plastid partial mRNA for 5-enolpyruvylshikimate-3-phosphate synthase (epsps-S gene) Length = 1338 Score = 123 bits (62), Expect = 4e-25 Identities = 107/122 (87%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || |||||||| || ||||| ||||||||| |||||||| Sbjct: 1216 atggccatggccttctccctcgccgcctgcgccgacgtgcctgtgaccatccgggacccc 1275 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaac 178 || |||||||| ||||||||||| ||||||||||||| || ||||| || ||||||||| Sbjct: 1276 ggctgcacccgcaagaccttcccagactacttcgacgtgctgagcactttcgtcaagaac 1335 Query: 179 ta 180 || Sbjct: 1336 ta 1337
>emb|AJ417033.1|EIN417033 Eleusine indica plastid partial mRNA for 5-enolpyruvylshikimate-3-phosphate synthase (epsps-R gene) Length = 1338 Score = 123 bits (62), Expect = 4e-25 Identities = 107/122 (87%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || |||||||| || ||||| ||||||||| |||||||| Sbjct: 1216 atggccatggccttctccctcgccgcctgcgccgacgtgcctgtgaccatccgggacccc 1275 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaac 178 || |||||||| ||||||||||| ||||||||||||| || ||||| || ||||||||| Sbjct: 1276 ggctgcacccgcaagaccttcccagactacttcgacgtgctgagcactttcgtcaagaac 1335 Query: 179 ta 180 || Sbjct: 1336 ta 1337
>gb|AY157643.1| Eleusine indica 5-enolpyruvylshikimate-3-phosphate synthase (epsps-R) gene, partial cds; nuclear gene for plastid product Length = 3079 Score = 123 bits (62), Expect = 4e-25 Identities = 107/122 (87%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || |||||||| || ||||| ||||||||| |||||||| Sbjct: 2957 atggccatggccttctccctcgccgcctgcgccgacgtgcctgtgaccatccgggacccc 3016 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaac 178 || |||||||| ||||||||||| ||||||||||||| || ||||| || ||||||||| Sbjct: 3017 ggctgcacccgcaagaccttcccagactacttcgacgtgctgagcactttcgtcaagaac 3076 Query: 179 ta 180 || Sbjct: 3077 ta 3078
>gb|AY157642.1| Eleusine indica 5-enolpyruvylshikimate-3-phosphate synthase (epsps-S) gene, partial cds; nuclear gene for plastid product Length = 3115 Score = 123 bits (62), Expect = 4e-25 Identities = 107/122 (87%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || |||||||| || ||||| ||||||||| |||||||| Sbjct: 2993 atggccatggccttctccctcgccgcctgcgccgacgtgcctgtgaccatccgggacccc 3052 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaac 178 || |||||||| ||||||||||| ||||||||||||| || ||||| || ||||||||| Sbjct: 3053 ggctgcacccgcaagaccttcccagactacttcgacgtgctgagcactttcgtcaagaac 3112 Query: 179 ta 180 || Sbjct: 3113 ta 3114
>dbj|AB124891.1| Oryza longistaminata EPSPs, rps20 genes for 5-enolpyruvylshikimate-3-phosphate synthase, ribosomal protein small subunit 20, partial sequences, cultivar:W1422 Length = 3045 Score = 121 bits (61), Expect = 2e-24 Identities = 106/121 (87%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| ||||| |||||||| || |||||||| || ||||| ||||| ||||||||||| Sbjct: 515 atggccatggctttctccctcgctgcctgcgccgacgtgcccgtgacgatcagggaccct 574 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaac 178 || |||||||| |||||||||||||||||||||||||| |||||||| || |||| |||| Sbjct: 575 ggttgcacccgcaagaccttccccaactacttcgacgtgctaagcactttcgtcaggaac 634 Query: 179 t 179 | Sbjct: 635 t 635
>dbj|AB124887.1| Oryza barthii EPSPs, rps20 genes for 5-enolpyruvylshikimate-3-phosphate synthase, ribosomal protein small subunit 20, partial sequences, cultivar:W159b-2 Length = 2960 Score = 121 bits (61), Expect = 2e-24 Identities = 106/121 (87%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||| ||||| || |||||||| || ||||| ||||| ||||||||||| Sbjct: 507 atggccatggccttttccctcgctgcctgcgccgacgtgcccgtgacgatcagggaccct 566 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaac 178 || |||||||| |||||||||||||||||||||||||| |||||||| || |||| |||| Sbjct: 567 ggttgcacccgcaagaccttccccaactacttcgacgtgctaagcactttcgtcaggaac 626 Query: 179 t 179 | Sbjct: 627 t 627
>dbj|AB124886.1| Oryza glaberrima EPSPs, rps20 genes for 5-enolpyruvylshikimate-3-phosphate synthase, ribosomal protein small subunit 20, partial sequences, cultivar:W025 Length = 2961 Score = 121 bits (61), Expect = 2e-24 Identities = 106/121 (87%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||| ||||| || |||||||| || ||||| ||||| ||||||||||| Sbjct: 507 atggccatggccttttccctcgctgcctgcgccgacgtgcccgtgacgatcagggaccct 566 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaac 178 || |||||||| |||||||||||||||||||||||||| |||||||| || |||| |||| Sbjct: 567 ggttgcacccgcaagaccttccccaactacttcgacgtgctaagcactttcgtcaggaac 626 Query: 179 t 179 | Sbjct: 627 t 627
>gb|AF496790.1| Zea mays cultivar C_9 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 256 Score = 109 bits (55), Expect = 7e-21 Identities = 103/119 (86%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || ||||||||| ||||||| Sbjct: 54 atggccatggccttctcccttgccgcctgtgccgaggtccccgtgaccatccgggaccct 113 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 114 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 172
>gb|AF496789.1| Zea mays cultivar D_9 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 265 Score = 109 bits (55), Expect = 7e-21 Identities = 103/119 (86%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || ||||||||| ||||||| Sbjct: 63 atggccatggccttctcccttgccgcctgtgccgaggtccccgtgaccatccgggaccct 122 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 123 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 181
>gb|AF496785.1| Zea mays cultivar D_7 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 266 Score = 109 bits (55), Expect = 7e-21 Identities = 103/119 (86%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || ||||||||| ||||||| Sbjct: 64 atggccatggccttctcccttgccgcctgtgccgaggtccccgtgaccatccgggaccct 123 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 124 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 182
>gb|AF496784.1| Zea mays cultivar TX601 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 265 Score = 109 bits (55), Expect = 7e-21 Identities = 103/119 (86%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || ||||||||| ||||||| Sbjct: 63 atggccatggccttctcccttgccgcctgtgccgaggtccccgtgaccatccgggaccct 122 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 123 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 181
>gb|AF496782.1| Zea mays cultivar H60 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 265 Score = 109 bits (55), Expect = 7e-21 Identities = 103/119 (86%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || ||||||||| ||||||| Sbjct: 63 atggccatggccttctcccttgccgcctgtgccgaggtccccgtgaccatccgggaccct 122 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 123 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 181
>gb|AF496780.1| Zea mays cultivar 684 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 260 Score = 109 bits (55), Expect = 7e-21 Identities = 103/119 (86%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || ||||||||| ||||||| Sbjct: 58 atggccatggccttctcccttgccgcctgtgccgaggtccccgtgaccatccgggaccct 117 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 118 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 176
>gb|AF496779.1| Zea mays cultivar D71-4HT 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 265 Score = 109 bits (55), Expect = 7e-21 Identities = 103/119 (86%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || ||||||||| ||||||| Sbjct: 63 atggccatggccttctcccttgccgcctgtgccgaggtccccgtgaccatccgggaccct 122 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 123 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 181
>gb|AF496778.1| Zea mays cultivar IVANA 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 265 Score = 109 bits (55), Expect = 7e-21 Identities = 103/119 (86%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || ||||||||| ||||||| Sbjct: 63 atggccatggccttctcccttgccgcctgtgccgaggtccccgtgaccatccgggaccct 122 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 123 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 181
>gb|AF496775.1| Zea mays cultivar B73 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 265 Score = 109 bits (55), Expect = 7e-21 Identities = 103/119 (86%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || ||||||||| ||||||| Sbjct: 63 atggccatggccttctcccttgccgcctgtgccgaggtccccgtgaccatccgggaccct 122 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 123 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 181
>gb|AF496774.1| Zea mays cultivar F_2 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 262 Score = 109 bits (55), Expect = 7e-21 Identities = 103/119 (86%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || ||||||||| ||||||| Sbjct: 60 atggccatggccttctcccttgccgcctgtgccgaggtccccgtgaccatccgggaccct 119 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 120 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 178
>gb|AF496773.1| Zea mays cultivar G_1 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 262 Score = 109 bits (55), Expect = 7e-21 Identities = 103/119 (86%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || ||||||||| ||||||| Sbjct: 60 atggccatggccttctcccttgccgcctgtgccgaggtccccgtgaccatccgggaccct 119 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 120 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 178
>gb|AF496772.1| Zea mays cultivar B_6 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 260 Score = 109 bits (55), Expect = 7e-21 Identities = 103/119 (86%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || ||||||||| ||||||| Sbjct: 58 atggccatggccttctcccttgccgcctgtgccgaggtccccgtgaccatccgggaccct 117 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 118 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 176
>gb|AF496771.1| Zea mays cultivar H_4 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 265 Score = 109 bits (55), Expect = 7e-21 Identities = 103/119 (86%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || ||||||||| ||||||| Sbjct: 63 atggccatggccttctcccttgccgcctgtgccgaggtccccgtgaccatccgggaccct 122 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 123 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 181
>gb|AF496770.1| Zea mays cultivar F_4 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 265 Score = 109 bits (55), Expect = 7e-21 Identities = 103/119 (86%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || ||||||||| ||||||| Sbjct: 63 atggccatggccttctcccttgccgcctgtgccgaggtccccgtgaccatccgggaccct 122 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 123 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 181
>gb|AF496768.1| Zea mays cultivar F_5 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 265 Score = 109 bits (55), Expect = 7e-21 Identities = 103/119 (86%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || ||||||||| ||||||| Sbjct: 63 atggccatggccttctcccttgccgcctgtgccgaggtccccgtgaccatccgggaccct 122 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 123 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 181
>gb|AF496767.1| Zea mays cultivar H_5 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 226 Score = 109 bits (55), Expect = 7e-21 Identities = 103/119 (86%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || ||||||||| ||||||| Sbjct: 24 atggccatggccttctcccttgccgcctgtgccgaggtccccgtgaccatccgggaccct 83 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 84 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 142
>gb|AF496766.1| Zea mays cultivar J40 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 265 Score = 109 bits (55), Expect = 7e-21 Identities = 103/119 (86%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || ||||||||| ||||||| Sbjct: 63 atggccatggccttctcccttgccgcctgtgccgaggtccccgtgaccatccgggaccct 122 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 123 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 181
>gb|AF496765.1| Zea mays cultivar 647 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 265 Score = 109 bits (55), Expect = 7e-21 Identities = 103/119 (86%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || ||||||||| ||||||| Sbjct: 63 atggccatggccttctcccttgccgcctgtgccgaggtccccgtgaccatccgggaccct 122 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 123 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 181
>gb|AF496762.1| Zea mays cultivar C_5 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 262 Score = 109 bits (55), Expect = 7e-21 Identities = 103/119 (86%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || ||||||||| ||||||| Sbjct: 60 atggccatggccttctcccttgccgcctgtgccgaggtccccgtgaccatccgggaccct 119 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 120 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 178
>gb|AY106729.1| Zea mays PCO094563 mRNA sequence Length = 1443 Score = 109 bits (55), Expect = 7e-21 Identities = 103/119 (86%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || ||||||||| ||||||| Sbjct: 1088 atggccatggccttctcccttgccgcctgtgccgaggtccccgtgaccatccgggaccct 1147 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 1148 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 1206
>emb|X63374.1|ZMEPSPS Z.mays mRNA for EPSP-synthase Length = 1335 Score = 101 bits (51), Expect = 2e-18 Identities = 102/119 (85%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || || |||||| ||||||| Sbjct: 1213 atggccatggccttctcccttgccgcctgtgccgaggtccccgtcaccatccgggaccct 1272 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 1273 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 1331
>gb|AF496788.1| Zea mays cultivar D_6 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 266 Score = 101 bits (51), Expect = 2e-18 Identities = 102/119 (85%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || ||| ||||| ||||||| Sbjct: 64 atggccatggccttctcccttgccgcctgtgccgaggtccccgtggccatccgggaccct 123 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 124 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 182
>gb|AF496787.1| Zea mays cultivar F_1 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 266 Score = 101 bits (51), Expect = 2e-18 Identities = 102/119 (85%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || ||| ||||| ||||||| Sbjct: 64 atggccatggccttctcccttgccgcctgtgccgaggtccccgtggccatccgggaccct 123 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 124 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 182
>gb|AF496786.1| Zea mays cultivar Mo17 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 266 Score = 101 bits (51), Expect = 2e-18 Identities = 102/119 (85%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || || |||||| ||||||| Sbjct: 64 atggccatggccttctcccttgccgcctgtgccgaggtccccgtcaccatccgggaccct 123 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 124 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 182
>gb|AF496783.1| Zea mays cultivar B84 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 266 Score = 101 bits (51), Expect = 2e-18 Identities = 102/119 (85%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || ||| ||||| ||||||| Sbjct: 64 atggccatggccttctcccttgccgcctgtgccgaggtccccgtggccatccgggaccct 123 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 124 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 182
>gb|AF496781.1| Zea mays cultivar DE811 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 266 Score = 101 bits (51), Expect = 2e-18 Identities = 102/119 (85%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || || |||||| ||||||| Sbjct: 64 atggccatggccttctcccttgccgcctgtgccgaggtccccgtcaccatccgggaccct 123 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 124 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 182
>gb|AF496777.1| Zea mays cultivar CO109 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 266 Score = 101 bits (51), Expect = 2e-18 Identities = 102/119 (85%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || ||| ||||| ||||||| Sbjct: 64 atggccatggccttctcccttgccgcctgtgccgaggtccccgtggccatccgggaccct 123 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 124 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 182
>gb|AF496776.1| Zea mays cultivar I_1 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 260 Score = 101 bits (51), Expect = 2e-18 Identities = 102/119 (85%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || ||| ||||| ||||||| Sbjct: 58 atggccatggccttctcccttgccgcctgtgccgaggtccccgtggccatccgggaccct 117 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 118 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 176
>gb|AF496769.1| Zea mays cultivar F_3 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 265 Score = 101 bits (51), Expect = 2e-18 Identities = 102/119 (85%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || ||| ||||| ||||||| Sbjct: 63 atggccatggccttctcccttgccgcctgtgccgaggtccccgtggccatccgggaccct 122 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 123 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 181
>gb|AF496764.1| Zea mays cultivar B_1 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 262 Score = 101 bits (51), Expect = 2e-18 Identities = 102/119 (85%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || || |||||| ||||||| Sbjct: 60 atggccatggccttctcccttgccgcctgtgccgaggtccccgtcaccatccgggaccct 119 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 120 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 178
>gb|AF496763.1| Zea mays cultivar F_6 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 263 Score = 101 bits (51), Expect = 2e-18 Identities = 102/119 (85%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || || |||||| ||||||| Sbjct: 61 atggccatggccttctcccttgccgcctgtgccgaggtccccgtcaccatccgggaccct 120 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 121 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 179
>gb|AF496761.1| Zea mays cultivar H_1 3-phosphoshikimate 1-carboxyvinyltransferase gene, 3'UTR and partial cds Length = 259 Score = 101 bits (51), Expect = 2e-18 Identities = 102/119 (85%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggacccc 118 ||||| |||||||||||||| || ||||| || ||||| || ||| ||||| ||||||| Sbjct: 57 atggccatggccttctcccttgccgcctgtgccgaggtccccgtggccatccgggaccct 116 Query: 119 gggtgcacccgaaagaccttccccaactacttcgacgtcctaagcacatttgtcaagaa 177 ||||||||||| |||||||||||| |||||||||| || || ||||| || |||||||| Sbjct: 117 gggtgcacccggaagaccttccccgactacttcgatgtgctgagcactttcgtcaagaa 175
>gb|AY545667.1| Conyza canadensis 5-enol-pyruvylshikimate-phosphate synthase (EPSPS2) gene, complete cds Length = 7954 Score = 58.0 bits (29), Expect = 2e-05 Identities = 77/93 (82%) Strand = Plus / Plus Query: 58 aatggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggaccc 117 |||||| ||||| ||||| || || ||||| || ||||| || || ||||| | |||||| Sbjct: 7683 aatggccatggctttctcgcttgccgcctgtgcagaggttcctgtcaccattaaggaccc 7742 Query: 118 cgggtgcacccgaaagaccttccccaactactt 150 || |||||||| |||||||||||| ||||||| Sbjct: 7743 gggttgcacccgtaagaccttccccgactactt 7775
>gb|AY512663.1| Brassica rapa 5-enolpyruvylshikimate-3-phosphate synthase (EPSP) mRNA, complete cds Length = 1726 Score = 50.1 bits (25), Expect = 0.005 Identities = 76/93 (81%) Strand = Plus / Plus Query: 58 aatggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggaccc 117 |||||||||||| ||||| || || || || ||||| || ||||| ||||||| ||| || Sbjct: 1422 aatggcgatggcgttctcgcttgcagcatgtgctgatgttccagtcaccatcaaggatcc 1481 Query: 118 cgggtgcacccgaaagaccttccccaactactt 150 || |||||| ||||||| ||||| ||||||| Sbjct: 1482 tggctgcaccagaaagactttccctgactactt 1514
>gb|AC113387.2| Homo sapiens chromosome 5 clone RP11-351A8, complete sequence Length = 153428 Score = 48.1 bits (24), Expect = 0.021 Identities = 27/28 (96%) Strand = Plus / Plus Query: 342 tgtattcgttttttgaataagaaataaa 369 |||||||||||||| ||||||||||||| Sbjct: 44255 tgtattcgtttttttaataagaaataaa 44282
>gb|AC034235.5| Homo sapiens chromosome 5 clone CTD-2262B2, complete sequence Length = 103950 Score = 48.1 bits (24), Expect = 0.021 Identities = 27/28 (96%) Strand = Plus / Minus Query: 342 tgtattcgttttttgaataagaaataaa 369 |||||||||||||| ||||||||||||| Sbjct: 7642 tgtattcgtttttttaataagaaataaa 7615
>gb|M61904.1|TOBEPSPS1 N.tabacum 5-enolpyruvylshikimate-3-phosphate synthase mRNA, complete cds Length = 2011 Score = 46.1 bits (23), Expect = 0.084 Identities = 50/59 (84%) Strand = Plus / Plus Query: 98 ccagtgaccatcagggaccccgggtgcacccgaaagaccttccccaactacttcgacgt 156 ||||| ||||| | ||||||||| || || || || ||||||||||||||||| ||||| Sbjct: 1592 ccagtcaccattaaggaccccggttgtactcgcaaaaccttccccaactactttgacgt 1650
>emb|X51475.1|BNEPSPG Brassica napus 5-enolpyruvylshikimate-3-phosphate synthase gene Length = 3831 Score = 44.1 bits (22), Expect = 0.33 Identities = 76/94 (80%) Strand = Plus / Plus Query: 58 aatggcgatggccttctccctggcggcctgcgctgaggtgccagtgaccatcagggaccc 117 |||||||||||| ||||| || || || || ||||| || ||||| ||||||| ||| || Sbjct: 2961 aatggcgatggcgttctcgcttgcagcttgtgctgatgttccagtcaccatcaaggatcc 3020 Query: 118 cgggtgcacccgaaagaccttccccaactacttc 151 || |||||| | ||||| ||||| |||||||| Sbjct: 3021 tggctgcaccaggaagactttccctgactacttc 3054
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 53 ccggcaatggcgatggccttct 74 |||||||||||||||||||||| Sbjct: 6928749 ccggcaatggcgatggccttct 6928770
>gb|AC113033.13| Mus musculus chromosome 7, clone RP23-220I5, complete sequence Length = 177962 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 285 tttaatattagttttgtagtg 305 ||||||||||||||||||||| Sbjct: 150470 tttaatattagttttgtagtg 150450
>gb|AC163218.5| Mus musculus chromosome 7, clone RP24-102H24, complete sequence Length = 194207 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 285 tttaatattagttttgtagtg 305 ||||||||||||||||||||| Sbjct: 162702 tttaatattagttttgtagtg 162722
>ref|NM_120863.3| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ DNA binding / endonuclease/ helicase/ nucleic acid binding AT5G07810 mRNA, complete cds Length = 3702 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 accggcaatggcgatggcct 71 |||||||||||||||||||| Sbjct: 723 accggcaatggcgatggcct 704
>gb|AY618934.1| Ambystoma tigrinum tigrinum RhAG-like protein mRNA, complete cds Length = 1942 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cttctccctggcggcctgcg 89 |||||||||||||||||||| Sbjct: 761 cttctccctggcggcctgcg 780
>ref|XM_361703.1| Magnaporthe grisea 70-15 hypothetical protein (MG04177.4) partial mRNA Length = 5685 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 atggccttctccctggcggc 84 |||||||||||||||||||| Sbjct: 4670 atggccttctccctggcggc 4651
>gb|AY657980.1| Synthetic construct Peudomonas aeruginosa clone FLH046542.01F PA1287 gene, partial cds Length = 555 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 60 tggcgatggccttctccctggcggcctg 87 |||||||||||||||| |||||||||| Sbjct: 544 tggcgatggccttctcgatggcggcctg 517
>ref|XM_670905.1| Plasmodium berghei strain ANKA hypothetical protein (PB106995.00.0) partial mRNA Length = 678 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 tttgaataagaaataaattg 372 |||||||||||||||||||| Sbjct: 597 tttgaataagaaataaattg 578
>emb|AL160053.15| Human DNA sequence from clone RP11-536D16 on chromosome 9 Contains the 3' end of the variant for the C9orf93 gene for chromosome 9 open reading frame 93, complete sequence Length = 172845 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 ctttaatattagttttgtag 303 |||||||||||||||||||| Sbjct: 85813 ctttaatattagttttgtag 85794
>emb|AL133421.1|ATF13G24 Arabidopsis thaliana DNA chromosome 5, BAC clone F13G24 (ESSA project) Length = 88095 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 accggcaatggcgatggcct 71 |||||||||||||||||||| Sbjct: 4426 accggcaatggcgatggcct 4445
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 cgcccaatccctgctccatg 32 |||||||||||||||||||| Sbjct: 2495035 cgcccaatccctgctccatg 2495054
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 ttttttgaataagaaataaa 369 |||||||||||||||||||| Sbjct: 2023904 ttttttgaataagaaataaa 2023923
>emb|BX296527.6| Zebrafish DNA sequence from clone DKEYP-32C3 in linkage group 2, complete sequence Length = 185706 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 gtctttaatattagttttgt 301 |||||||||||||||||||| Sbjct: 44351 gtctttaatattagttttgt 44370
>gb|AF306531.1|AF306531 Bacillus circulans endo-beta-1,3-1,4-glucanase (bglBC1) gene, complete cds Length = 2053 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 atgcccaccaaccccgttcg 49 |||||||||||||||||||| Sbjct: 1110 atgcccaccaaccccgttcg 1091
>gb|AC016743.10| Homo sapiens BAC clone RP11-475H17 from 2, complete sequence Length = 144355 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 gatggtgtatgagtctttaa 289 |||||||||||||||||||| Sbjct: 15945 gatggtgtatgagtctttaa 15926
>gb|AE004558.1| Pseudomonas aeruginosa PAO1, section 119 of 529 of the complete genome Length = 9917 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 60 tggcgatggccttctccctggcggcctg 87 |||||||||||||||| |||||||||| Sbjct: 5063 tggcgatggccttctcgatggcggcctg 5036
>emb|BX284691.5| Zebrafish DNA sequence from clone CH211-224J19 in linkage group 2, complete sequence Length = 174775 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 gtctttaatattagttttgt 301 |||||||||||||||||||| Sbjct: 91779 gtctttaatattagttttgt 91760
>dbj|AB017064.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDN11 Length = 83373 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 gtctttaatattagttttgt 301 |||||||||||||||||||| Sbjct: 9504 gtctttaatattagttttgt 9485
>dbj|AB005249.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXM12 Length = 83599 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 accggcaatggcgatggcct 71 |||||||||||||||||||| Sbjct: 19830 accggcaatggcgatggcct 19849
>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0026E05 Length = 159860 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 ttttttgaataagaaataaa 369 |||||||||||||||||||| Sbjct: 74112 ttttttgaataagaaataaa 74131
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 59 atggcgatggccttctccctggcggcct 86 |||||||||||||| || |||||||||| Sbjct: 959632 atggcgatggccttttcgctggcggcct 959659
>emb|BX927101.19| Zebrafish DNA sequence from clone CH211-120F16 in linkage group 2, complete sequence Length = 162145 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 gtctttaatattagttttgt 301 |||||||||||||||||||| Sbjct: 61580 gtctttaatattagttttgt 61561
>gb|AC102310.11| Mus musculus chromosome 7, clone RP24-426A19, complete sequence Length = 180370 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 ttttttgaataagaaataaa 369 |||||||||||||||||||| Sbjct: 31903 ttttttgaataagaaataaa 31922 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,891,773 Number of Sequences: 3902068 Number of extensions: 2891773 Number of successful extensions: 68949 Number of sequences better than 10.0: 88 Number of HSP's better than 10.0 without gapping: 88 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68600 Number of HSP's gapped (non-prelim): 349 length of query: 387 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 365 effective length of database: 17,147,199,772 effective search space: 6258727916780 effective search space used: 6258727916780 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
