ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd0b01 |
|---|---|
| Clone Library Name | barley_pub |
>SEC16_SCHPO (O14029) Multidomain vesicle coat protein| Length = 1995 Score = 42.7 bits (99), Expect = 6e-04 Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 13/120 (10%) Frame = +1 Query: 43 FVNSQSVMTMSSLTASPSVHSITEMAEN-------SGGAGRKIAHNRS--VSEPDFGKXQ 195 +V S M ++ ++PS ++ +E+ S A + A N + V + + + Q Sbjct: 1754 YVPSNIAPAMGAMQSAPSAEAVAAPSESLNLNKDRSQQAKQAAAQNVADLVRQEEEKEKQ 1813 Query: 196 KQGSRSDNTQSSASGSRFGWIGSTLQKTMGFVSKSR----QAKLGQQNKFYYDEKLKRWV 363 KQ ++ N +S G GW L++ SK + +AKLG+++ +YD++LKRWV Sbjct: 1814 KQKAKK-NAESGKKGGAKGWFSKLLRRDE---SKDQPTVYKAKLGEKSHLHYDKELKRWV 1869
>SEC16_YEAST (P48415) Multidomain vesicle coat protein| Length = 2195 Score = 42.4 bits (98), Expect = 8e-04 Identities = 25/57 (43%), Positives = 31/57 (54%) Frame = +1 Query: 193 QKQGSRSDNTQSSASGSRFGWIGSTLQKTMGFVSKSRQAKLGQQNKFYYDEKLKRWV 363 +K+ S+ S FGW L+K G K +AKLG +N YYDEKLKRWV Sbjct: 2009 KKETKPSNKDIDDKSNGWFGW----LKKDTGD-KKVYKAKLGHKNTLYYDEKLKRWV 2060
>ANC1_MOUSE (P53995) Anaphase-promoting complex subunit 1 (APC1) (Cyclosome| subunit 1) (Protein Tsg24) (Mitotic checkpoint regulator) Length = 1944 Score = 34.3 bits (77), Expect = 0.22 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 7/80 (8%) Frame = +1 Query: 25 APAAAKFVNSQSVMTMSSLTASPSVHSITEMAENSGGAGRKIAHNRSVSEPDFGKXQK-- 198 +P A+ F N S+ + S T+SPS+HS + N G R AH+ ++ F Q+ Sbjct: 313 SPVASPFQNYSSIHSQSRSTSSPSLHSRSPSISNMGVLSR--AHSPALGVHSFSGAQRFN 370 Query: 199 -----QGSRSDNTQSSASGS 243 Q + + S SGS Sbjct: 371 LSSHSQSPKRHSISHSPSGS 390
>RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-associated cellular| protein of testis) (Proliferation potential-related protein) (Protein P2P-R) (Retinoblastoma-binding Q protein 1) (Protein RBQ-1) Length = 1792 Score = 33.9 bits (76), Expect = 0.29 Identities = 21/63 (33%), Positives = 36/63 (57%) Frame = +1 Query: 169 SEPDFGKXQKQGSRSDNTQSSASGSRFGWIGSTLQKTMGFVSKSRQAKLGQQNKFYYDEK 348 SEP K +++ ++DNT+SS+S + I T +K + S+ AK Q+ K +EK Sbjct: 1055 SEPPIKKAKEETPKTDNTKSSSSSQKDEKITGTPRK-----AHSKSAKEHQETKPVKEEK 1109 Query: 349 LKR 357 +K+ Sbjct: 1110 VKK 1112
>NU214_HUMAN (P35658) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)| (214 kDa nucleoporin) (CAN protein) Length = 2090 Score = 33.5 bits (75), Expect = 0.37 Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Frame = +1 Query: 10 GGNLXAPAAAKFVNSQSVMTMSSLTASPSVHSITEMAENS--GGAGRKIAHNRSVSEPDF 183 G AA V+S + + T +P V T + S G + A S S+P F Sbjct: 1691 GSTASTAAATPQVSSSGFSSPAFGTTAPGVFGQTTFGQASVFGQSASSAASVFSFSQPGF 1750 Query: 184 GKXQKQGSRSDNTQSSASGSRFGWIGST 267 G + +T +S SGS FG ST Sbjct: 1751 SSVPAFGQPASSTPTSTSGSVFGAASST 1778
>RECQ_PASMU (Q9CL21) ATP-dependent DNA helicase recQ (EC 3.6.1.-)| Length = 632 Score = 33.1 bits (74), Expect = 0.49 Identities = 18/51 (35%), Positives = 30/51 (58%) Frame = -3 Query: 460 LSYSPAFHSGMRRILLEVAREEAPQQESQHLPLPIASAFHRSKTCSVALIL 308 L Y PA ++ + +ILLE + E+PQ++ + L L F S+TC ++L Sbjct: 351 LFYEPADYAWLHKILLE--KPESPQRQIEALKLQAIGEFAESQTCRRLVLL 399
>RTOA_DICDI (P54681) Protein rtoA (Ratio-A)| Length = 400 Score = 31.6 bits (70), Expect = 1.4 Identities = 23/82 (28%), Positives = 37/82 (45%) Frame = +1 Query: 82 TASPSVHSITEMAENSGGAGRKIAHNRSVSEPDFGKXQKQGSRSDNTQSSASGSRFGWIG 261 + S S +S ++ NSG +++ S S + G + GS + +QSS S G G Sbjct: 87 SVSSSSNSGSQSTSNSGSEASGSSNSGSQSTSNSGS-EASGSSNSGSQSSTDSSNSGSQG 145 Query: 262 STLQKTMGFVSKSRQAKLGQQN 327 ST G S + + G Q+ Sbjct: 146 STGSSNSGSQSSTDSSNSGSQS 167 Score = 28.9 bits (63), Expect = 9.2 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 7/116 (6%) Frame = +1 Query: 1 SARGGNLXAPAAAKFVNSQSVMTMSSLT----ASPSVHSITEMAENSGGAGRKIAHNRSV 168 S+ G N A + +S + + S+ AS S +S ++ NSG +++ S Sbjct: 74 SSSGSNSTASSEGSVSSSSNSGSQSTSNSGSEASGSSNSGSQSTSNSGSEASGSSNSGSQ 133 Query: 169 SEPDFGKXQKQ---GSRSDNTQSSASGSRFGWIGSTLQKTMGFVSKSRQAKLGQQN 327 S D Q GS + +QSS S G ST G + + G ++ Sbjct: 134 SSTDSSNSGSQGSTGSSNSGSQSSTDSSNSGSQSSTDSSNSGSQGSTGSSNSGSES 189
>ANC1_HUMAN (Q9H1A4) Anaphase-promoting complex subunit 1 (APC1) (Cyclosome| subunit 1) (Protein Tsg24) (Mitotic checkpoint regulator) Length = 1944 Score = 31.6 bits (70), Expect = 1.4 Identities = 19/65 (29%), Positives = 30/65 (46%) Frame = +1 Query: 25 APAAAKFVNSQSVMTMSSLTASPSVHSITEMAENSGGAGRKIAHNRSVSEPDFGKXQKQG 204 +P + F N S+ + S T+SPS+HS + N R AH+ ++ F Q+ Sbjct: 313 SPVTSPFQNYSSIHSQSRSTSSPSLHSRSPSISNMAALSR--AHSPALGVHSFSGVQRFN 370 Query: 205 SRSDN 219 S N Sbjct: 371 ISSHN 375
>RECQ_HAEIN (P71359) ATP-dependent DNA helicase recQ (EC 3.6.1.-)| Length = 619 Score = 31.2 bits (69), Expect = 1.9 Identities = 17/51 (33%), Positives = 29/51 (56%) Frame = -3 Query: 460 LSYSPAFHSGMRRILLEVAREEAPQQESQHLPLPIASAFHRSKTCSVALIL 308 L Y PA ++ +++ILLE + E PQ++ + L F S+TC ++L Sbjct: 341 LFYEPADYAWLQKILLE--KPETPQRQIEQHKLEAIGEFAESQTCRRLVLL 389
>CDSN_MOUSE (Q7TPC1) Corneodesmosin precursor| Length = 561 Score = 31.2 bits (69), Expect = 1.9 Identities = 40/167 (23%), Positives = 64/167 (38%), Gaps = 2/167 (1%) Frame = +1 Query: 1 SARGGNLXAPAAAKFVNSQSVMTMSSLTASPSVHSITEMAENSGGAGRKIAHNRSVSEPD 180 S+ GG+ + ++ S S++ S S +S GG+G + + S + Sbjct: 84 SSHGGSSSSQGSS----SGSLIYKPGTGYSQSSYSYGSGGSRPGGSGSQTGSSSSQTGSS 139 Query: 181 FGKXQKQGSRSDNT--QSSASGSRFGWIGSTLQKTMGFVSKSRQAKLGQQNKFYYDEKLK 354 + GS+S ++ QS +SGS+ G GS S S+ G Q+ Sbjct: 140 SSQSGSSGSQSGSSGSQSGSSGSQSGSSGSQSGS-----SGSQSGSSGSQSG-------- 186 Query: 355 RWVXXXXXXXXXXXXXXXXXTKSSSYQNGMPDYNLNGPASGMHIPNG 495 RWV SSS Q+G + + P SG +P G Sbjct: 187 RWVSSSSQWV------------SSSSQSGSSGSSRDRPGSGSALPTG 221
>TSH3_HUMAN (Q63HK5) Teashirt homolog 3 (Zinc finger protein 537)| Length = 1081 Score = 31.2 bits (69), Expect = 1.9 Identities = 16/49 (32%), Positives = 24/49 (48%) Frame = +1 Query: 157 NRSVSEPDFGKXQKQGSRSDNTQSSASGSRFGWIGSTLQKTMGFVSKSR 303 N ++ +P K S S ++ SS F W S + KT+ VS+SR Sbjct: 135 NLNLHQPSSEKNNGSSSSSSSSSSSCGSGSFDWHQSAMAKTLQQVSQSR 183
>SYL_PROMM (Q7TV01) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 878 Score = 30.8 bits (68), Expect = 2.4 Identities = 17/53 (32%), Positives = 24/53 (45%) Frame = +2 Query: 146 RLHTTEVFPNQTSAXHKNRVRDRIIHRAVHRVQDLVGLAPRCRRQWDLFQNPA 304 R + +FP + H VR+ +I + RVQ + G A WD F PA Sbjct: 48 RFYALSMFPYPSGKLHMGHVRNYVITDVIARVQRMRGDAVLHPMGWDAFGLPA 100
>MAP2_MOUSE (P20357) Microtubule-associated protein 2 (MAP 2)| Length = 1828 Score = 30.4 bits (67), Expect = 3.2 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 6/64 (9%) Frame = +1 Query: 67 TMSSLTASPSVHSITEMAENSGGAGRKIAHN------RSVSEPDFGKXQKQGSRSDNTQS 228 T +SLT + + H + ++ GGAG ++ N R E FG+ + QG+ SD ++ Sbjct: 15 TSASLTEA-AAHPHSPEMKDQGGAGEGLSRNANGFPYREEEEGAFGEHRSQGTYSDTKEN 73 Query: 229 SASG 240 +G Sbjct: 74 GING 77
>PIMA_MYCLE (O07147) Phosphatidylinositol alpha-mannosyltransferase (EC| 2.4.1.57) Length = 374 Score = 30.4 bits (67), Expect = 3.2 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 10/67 (14%) Frame = -3 Query: 460 LSYSPAFHSGMRRIL-------LEVAREEAPQQESQHLPL---PIASAFHRSKTCSVALI 311 L +SPA HS +RR L L + AP L + PI + FH S T S+ L Sbjct: 69 LQFSPAVHSRVRRWLVDGDFDVLHLHEPNAPSLSMWALRVAEGPIVATFHTSTTKSLTLS 128 Query: 310 LPGGILK 290 + G+L+ Sbjct: 129 VFQGVLR 135
>VRP1_YEAST (P37370) Verprolin| Length = 817 Score = 30.0 bits (66), Expect = 4.1 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 9/91 (9%) Frame = +1 Query: 58 SVMTMSSLTASPSVHSITEMAENSGGAGRKIAHNRSVSEPDF--------GKXQKQGSRS 213 S TM + T++ ++ + ++GG+ + HN ++PD G G++S Sbjct: 709 SPSTMDTGTSNSPSKNLKQRLFSTGGSTLQHKHNTHTNQPDVDVGRYTIGGSNSIVGAKS 768 Query: 214 DNTQSSASGSRFGWIG-STLQKTMGFVSKSR 303 N + SRF W S + K F +K++ Sbjct: 769 GNERIVIDDSRFKWTNVSQMPKPRPFQNKTK 799
>NRFA_PENUR (Q92269) Nitrogen regulatory protein nrfA| Length = 865 Score = 30.0 bits (66), Expect = 4.1 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +1 Query: 436 NGMPDYNLNGPASGMHIP-NGVAERRSPKH 522 +G+PDY+L+ P S +P NG R P+H Sbjct: 283 SGLPDYSLDHPPSAFALPGNGTVGPRRPQH 312
>SODM_PETMA (P28767) Superoxide dismutase [Mn], mitochondrial (EC 1.15.1.1)| (Fragment) Length = 144 Score = 29.6 bits (65), Expect = 5.4 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Frame = +1 Query: 100 HSI--TEMAENSGGAGRKIAHNRSVSEPDFGKXQKQGSRSDNTQSSASGSRFGWIG 261 HSI T ++ N GGA + E DFG K + + GS +GW+G Sbjct: 58 HSIFWTNLSPNGGGA--PTGDLQKAIETDFGSFTKLQEKMSAVSVAVQGSGWGWLG 111
>MCR_TUPGB (Q29131) Mineralocorticoid receptor (MR)| Length = 977 Score = 29.3 bits (64), Expect = 7.1 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = -3 Query: 283 PLSSAAWSQSNQILNP-MHCSVYYPIANPVFVXCRSLV 173 PLSS S + I +P HCSV P+++P V RS V Sbjct: 260 PLSSPLSSMKSPISSPPSHCSVKSPVSSPNNVTLRSCV 297
>MCR_HUMAN (P08235) Mineralocorticoid receptor (MR)| Length = 984 Score = 29.3 bits (64), Expect = 7.1 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = -3 Query: 283 PLSSAAWSQSNQILNP-MHCSVYYPIANPVFVXCRSLV 173 PLSS S + I +P HCSV P+++P V RS V Sbjct: 260 PLSSPLSSMKSSISSPPSHCSVKSPVSSPNNVTLRSSV 297
>MCR_AOTNA (Q3YC04) Mineralocorticoid receptor (MR)| Length = 984 Score = 29.3 bits (64), Expect = 7.1 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = -3 Query: 283 PLSSAAWSQSNQILNP-MHCSVYYPIANPVFVXCRSLV 173 PLSS S + I +P HCSV P+++P V RS V Sbjct: 260 PLSSPLSSMKSSISSPPSHCSVKSPVSSPNNVTLRSSV 297
>ZCC2_RAT (Q8K3Y6) Zinc finger CCCH type antiviral protein 1 (rZAP)| Length = 776 Score = 29.3 bits (64), Expect = 7.1 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 10/122 (8%) Frame = -3 Query: 445 AFHSGM---RRILLEVAREEAPQQESQHLPL-PIASAFHRSKTCSVALILPGGILKQIPL 278 A +SG+ R +L V E +S LP P++S+ HR+ PG + Sbjct: 499 AVYSGVQSPRSQVLAVPGEATTPVQSNRLPQSPLSSSSHRAAASGS----PGKNSTHTSV 554 Query: 277 SSAAWSQSNQILNPMHCSVYYPIANPVFVXC----RSLVRKHFC--CVQSSCQRHHYSLP 116 S A S S +P + Y I NP+F + + + H C QS C R H+ LP Sbjct: 555 SPAIES-SRMTSDPDEYLLRY-ILNPLFRMDNHGPKEICQDHLYKGCQQSHCDRSHFHLP 612 Query: 115 FQ 110 ++ Sbjct: 613 YR 614
>PTGDS_CANFA (Q9XS65) Prostaglandin-H2 D-isomerase precursor (EC 5.3.99.2)| (Lipocalin-type prostaglandin-D synthase) (Glutathione-independent PGD synthetase) (Prostaglandin-D2 synthase) (PGD2 synthase) (PGDS2) (PGDS) Length = 191 Score = 29.3 bits (64), Expect = 7.1 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +1 Query: 253 WIGSTLQKTMGFVSKSRQAKLGQQNKFYYDEKLKRW 360 W+G L +G + S QA++ Q F D+ L RW Sbjct: 8 WLGLVLLGVLGALQTSAQAQVSLQPNFQQDKFLGRW 43
>Y4RF_RHISN (P55639) Putative integrase/recombinase y4rF| Length = 425 Score = 28.9 bits (63), Expect = 9.2 Identities = 22/74 (29%), Positives = 32/74 (43%) Frame = +2 Query: 86 HPLQCILLLKWQRIVVALAGRLHTTEVFPNQTSAXHKNRVRDRIIHRAVHRVQDLVGLAP 265 HP Q + L + ++ A+ RL + +T+A R R + A H QDL + P Sbjct: 165 HPGQNLEALTAEHVLAAVEHRLSLSATSGTRTAATSHIRTFLRFLCWAGHHRQDLARIVP 224 Query: 266 RCRRQWDLFQNPAR 307 R W L P R Sbjct: 225 R-TPYWRLAHLPPR 237 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.308 0.123 0.347 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,949,262 Number of Sequences: 219361 Number of extensions: 1499734 Number of successful extensions: 3159 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3061 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3156 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4085413911 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits)
