ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27p12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470454.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2474 Score = 103 bits (52), Expect = 6e-19 Identities = 135/163 (82%) Strand = Plus / Minus Query: 380 ctcactactgtagaaaccagcagcttgtcaccgacaatctgtcttagccgtctcacaaaa 439 ||||||||||||||||||| ||||||||||| ||||||||||| ||| | |||| | Sbjct: 2099 ctcactactgtagaaaccaaaagcttgtcaccaacaatctgtctcagctgcttcactagg 2040 Query: 440 tcggncctgcttatctttctcctcttgaattcttcatagtgtccatggattatgtccatg 499 || | ||||||||||||||||||||||||||||||||| | | ||| | | |||||| Sbjct: 2039 tcaggcctgcttatctttctcctcttgaattcttcataatatttatgcaccagatccatg 1980 Query: 500 tcagaacgaggaacttttgtggagatggcagcaaaaagcattg 542 || ||||| || ||||| | ||| || |||||||||||||||| Sbjct: 1979 tccgaacggggtactttagcggaaatagcagcaaaaagcattg 1937
>dbj|AK072499.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023125E22, full insert sequence Length = 3913 Score = 103 bits (52), Expect = 6e-19 Identities = 135/163 (82%) Strand = Plus / Minus Query: 380 ctcactactgtagaaaccagcagcttgtcaccgacaatctgtcttagccgtctcacaaaa 439 ||||||||||||||||||| ||||||||||| ||||||||||| ||| | |||| | Sbjct: 3557 ctcactactgtagaaaccaaaagcttgtcaccaacaatctgtctcagctgcttcactagg 3498 Query: 440 tcggncctgcttatctttctcctcttgaattcttcatagtgtccatggattatgtccatg 499 || | ||||||||||||||||||||||||||||||||| | | ||| | | |||||| Sbjct: 3497 tcaggcctgcttatctttctcctcttgaattcttcataatatttatgcaccagatccatg 3438 Query: 500 tcagaacgaggaacttttgtggagatggcagcaaaaagcattg 542 || ||||| || ||||| | ||| || |||||||||||||||| Sbjct: 3437 tccgaacggggtactttagcggaaatagcagcaaaaagcattg 3395
>dbj|AK060748.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F11, full insert sequence Length = 2479 Score = 103 bits (52), Expect = 6e-19 Identities = 135/163 (82%) Strand = Plus / Minus Query: 380 ctcactactgtagaaaccagcagcttgtcaccgacaatctgtcttagccgtctcacaaaa 439 ||||||||||||||||||| ||||||||||| ||||||||||| ||| | |||| | Sbjct: 2123 ctcactactgtagaaaccaaaagcttgtcaccaacaatctgtctcagctgcttcactagg 2064 Query: 440 tcggncctgcttatctttctcctcttgaattcttcatagtgtccatggattatgtccatg 499 || | ||||||||||||||||||||||||||||||||| | | ||| | | |||||| Sbjct: 2063 tcaggcctgcttatctttctcctcttgaattcttcataatatttatgcaccagatccatg 2004 Query: 500 tcagaacgaggaacttttgtggagatggcagcaaaaagcattg 542 || ||||| || ||||| | ||| || |||||||||||||||| Sbjct: 2003 tccgaacggggtactttagcggaaatagcagcaaaaagcattg 1961
>gb|AC120506.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006O08 map S15179S, complete sequence Length = 166005 Score = 75.8 bits (38), Expect = 1e-10 Identities = 73/85 (85%) Strand = Plus / Plus Query: 380 ctcactactgtagaaaccagcagcttgtcaccgacaatctgtcttagccgtctcacaaaa 439 ||||||||||||||||||| ||||||||||| ||||||||||| ||| | |||| | Sbjct: 96494 ctcactactgtagaaaccaaaagcttgtcaccaacaatctgtctcagctgcttcactagg 96553 Query: 440 tcggncctgcttatctttctcctct 464 || | |||||||||||||||||||| Sbjct: 96554 tcaggcctgcttatctttctcctct 96578 Score = 42.1 bits (21), Expect = 1.9 Identities = 42/49 (85%) Strand = Plus / Plus Query: 494 tccatgtcagaacgaggaacttttgtggagatggcagcaaaaagcattg 542 |||||||| ||||| || ||||| | ||| || |||||||||||||||| Sbjct: 96699 tccatgtccgaacggggtactttagcggaaatagcagcaaaaagcattg 96747
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 75.8 bits (38), Expect = 1e-10 Identities = 73/85 (85%) Strand = Plus / Plus Query: 380 ctcactactgtagaaaccagcagcttgtcaccgacaatctgtcttagccgtctcacaaaa 439 ||||||||||||||||||| ||||||||||| ||||||||||| ||| | |||| | Sbjct: 35698716 ctcactactgtagaaaccaaaagcttgtcaccaacaatctgtctcagctgcttcactagg 35698775 Query: 440 tcggncctgcttatctttctcctct 464 || | |||||||||||||||||||| Sbjct: 35698776 tcaggcctgcttatctttctcctct 35698800 Score = 42.1 bits (21), Expect = 1.9 Identities = 42/49 (85%) Strand = Plus / Plus Query: 494 tccatgtcagaacgaggaacttttgtggagatggcagcaaaaagcattg 542 |||||||| ||||| || ||||| | ||| || |||||||||||||||| Sbjct: 35698921 tccatgtccgaacggggtactttagcggaaatagcagcaaaaagcattg 35698969
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 75.8 bits (38), Expect = 1e-10 Identities = 73/85 (85%) Strand = Plus / Plus Query: 380 ctcactactgtagaaaccagcagcttgtcaccgacaatctgtcttagccgtctcacaaaa 439 ||||||||||||||||||| ||||||||||| ||||||||||| ||| | |||| | Sbjct: 35788789 ctcactactgtagaaaccaaaagcttgtcaccaacaatctgtctcagctgcttcactagg 35788848 Query: 440 tcggncctgcttatctttctcctct 464 || | |||||||||||||||||||| Sbjct: 35788849 tcaggcctgcttatctttctcctct 35788873 Score = 42.1 bits (21), Expect = 1.9 Identities = 42/49 (85%) Strand = Plus / Plus Query: 494 tccatgtcagaacgaggaacttttgtggagatggcagcaaaaagcattg 542 |||||||| ||||| || ||||| | ||| || |||||||||||||||| Sbjct: 35788994 tccatgtccgaacggggtactttagcggaaatagcagcaaaaagcattg 35789042
>dbj|AB089269.1| Triticum aestivum D31 mRNA for fructan exohydrolase, complete cds Length = 2319 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 385 tactgtagaaaccagcagcttgtcaccgacaatctgtcttagccgtctca 434 |||||||||||||||||||||||| || || |||| |||| || |||||| Sbjct: 2247 tactgtagaaaccagcagcttgtcgccaacgatctttcttggctgtctca 2296
>gb|AC068608.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-434O14, complete sequence Length = 191358 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 451 tatctttctcctcttgaattc 471 ||||||||||||||||||||| Sbjct: 23229 tatctttctcctcttgaattc 23249
>gb|AC100708.10| Mus musculus chromosome 10, clone RP23-169I18, complete sequence Length = 196776 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 gaaccaaacaaagctacacca 155 ||||||||||||||||||||| Sbjct: 8458 gaaccaaacaaagctacacca 8438
>gb|AC108724.4| Homo sapiens 3 BAC RP11-413E6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186773 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 230 gtccttgtgctctccgtctcc 250 ||||||||||||||||||||| Sbjct: 61158 gtccttgtgctctccgtctcc 61178
>gb|AC138773.5| Homo sapiens BAC clone RP11-1320L20 from UL, complete sequence Length = 191144 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 230 gtccttgtgctctccgtctcc 250 ||||||||||||||||||||| Sbjct: 142645 gtccttgtgctctccgtctcc 142665
>gb|AC132265.4| Mus musculus BAC clone RP24-373J20 from chromosome 10, complete sequence Length = 178780 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 gaaccaaacaaagctacacca 155 ||||||||||||||||||||| Sbjct: 53370 gaaccaaacaaagctacacca 53390
>emb|AL592170.21| Human DNA sequence from clone RP11-298A19 on chromosome 22, complete sequence Length = 186861 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 230 gtccttgtgctctccgtctcc 250 ||||||||||||||||||||| Sbjct: 61370 gtccttgtgctctccgtctcc 61390
>gb|AY109834.1| Zea mays CL7866_1 mRNA sequence Length = 1353 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 459 tcctcttgaattcttcatagt 479 ||||||||||||||||||||| Sbjct: 444 tcctcttgaattcttcatagt 464
>ref|XM_418865.1| PREDICTED: Gallus gallus similar to DERP13 (dermal papilla derived protein 13) (LOC420768), mRNA Length = 2102 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 458 ctcctcttgaattcttcata 477 |||||||||||||||||||| Sbjct: 957 ctcctcttgaattcttcata 938
>gb|AC126032.4| Mus musculus BAC clone RP24-94B12 from chromosome 1, complete sequence Length = 207475 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 ctgtagaaaccagcagcttg 406 |||||||||||||||||||| Sbjct: 133779 ctgtagaaaccagcagcttg 133760
>emb|AL445468.8| Human DNA sequence from clone RP11-74P14 on chromosome 1 Contains part of the SMYD3 gene for SET and MYND domain containing 3 and two CpG islands, complete sequence Length = 179503 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 tatctttctcctcttgaatt 470 |||||||||||||||||||| Sbjct: 57227 tatctttctcctcttgaatt 57246
>gb|AC011942.6|AC011942 Homo sapiens, clone RP11-16I13, complete sequence Length = 122538 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 aaaagtaacaaattctacca 24 |||||||||||||||||||| Sbjct: 60433 aaaagtaacaaattctacca 60452 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,455,695 Number of Sequences: 3902068 Number of extensions: 4455695 Number of successful extensions: 76078 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76014 Number of HSP's gapped (non-prelim): 58 length of query: 552 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 529 effective length of database: 17,143,297,704 effective search space: 9068804485416 effective search space used: 9068804485416 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
